Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.39906 * 125.87824 * 94.71701 * 14 13 12 16 16 C 1.35337 * 107.93024 * 179.82390 * 15 14 13 17 17 N 1.35207 * 107.71099 * 0.43061 * 16 15 14 18 18 C 1.40251 * 126.04494 * 179.72858 * 17 16 15 19 19 C 1.38789 * 120.08253 * 359.69837 * 18 17 16 20 20 C 1.38132 * 119.96010 * 179.71976 * 19 18 17 21 21 C 1.38286 * 120.11136 * 0.55676 * 20 19 18 22 22 C 1.38245 * 120.15492 * 359.72036 * 21 20 19 23 23 C 1.38333 * 120.03906 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.05701 * 179.97438 * 23 22 21 25 25 N 1.30882 * 125.87844 * 275.02317 * 14 13 12 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 31 31 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 32 32 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 33 33 H 1.08005 * 126.03649 * 359.96054 * 15 14 13 34 34 H 1.08005 * 126.13852 * 180.15546 * 16 15 14 35 35 H 1.08005 * 120.02125 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.94360 * 180.27320 * 20 19 18 37 37 H 1.08002 * 119.92368 * 179.73937 * 21 20 19 38 38 H 1.08003 * 119.98201 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.7961 -1.1219 -4.5402 16 6 2.6213 -1.6824 -5.4547 17 7 3.8929 -1.4529 -5.0568 18 6 5.0542 -1.8719 -5.7221 19 6 4.9570 -2.5985 -6.9007 20 6 6.1025 -3.0049 -7.5570 21 6 7.3463 -2.6991 -7.0357 22 6 7.4486 -1.9806 -5.8590 23 6 6.3056 -1.5659 -5.1993 24 9 6.4051 -0.8642 -4.0491 25 7 3.8450 -0.7225 -3.8623 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 1.4496 -1.4980 -1.4101 31 1 1.0871 0.6162 -2.5525 32 1 2.7589 1.0461 -2.1182 33 1 0.7164 -1.1337 -4.5669 34 1 2.3183 -2.2206 -6.3408 35 1 3.9863 -2.8423 -7.3066 36 1 6.0265 -3.5665 -8.4764 37 1 8.2399 -3.0220 -7.5491 38 1 8.4214 -1.7430 -5.4546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609449196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = 71.764256 kcal Electronic energy + Delta-G solvation = -21775.555508 eV Core-core repulsion = 18341.655404 eV Total energy + Delta-G solvation = -3433.900104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.77877 -41.43347 -39.09983 -36.11449 -33.89153 -32.33463 -31.07486 -30.29795 -29.53854 -28.07505 -25.23008 -24.72507 -23.66584 -22.50031 -20.84869 -20.15050 -19.60603 -18.49011 -17.26321 -16.43146 -16.13973 -15.92297 -15.32771 -14.93323 -14.89137 -14.58827 -14.27019 -13.65068 -13.60820 -13.45189 -13.14428 -12.94468 -12.56921 -12.32696 -12.11154 -11.66854 -11.57507 -11.37159 -10.90584 -10.74911 -10.61835 -10.30057 -10.24994 -10.09617 -9.82255 -9.22615 -9.04729 -8.94777 -8.31399 -8.08535 -7.19659 -5.93513 -3.95997 0.52107 0.79975 2.09959 2.31343 2.87767 3.30552 3.36217 3.43632 3.50323 3.88754 4.24246 4.44939 4.50058 4.61040 4.69524 4.86049 4.96018 5.17427 5.36022 5.38466 5.60162 5.65382 5.68621 5.76731 5.80519 5.88225 5.98175 6.12660 6.31650 6.37512 6.69694 6.75679 6.87756 7.08408 7.11917 7.38380 7.77574 7.80867 7.93949 8.30930 8.57568 8.64886 9.11662 9.69058 11.13700 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003327 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.570997 B = 8414.232608 C = 9220.297294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.036 0.964 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.135 3.865 14 C 0.101 3.899 15 C -0.246 4.246 16 C 0.041 3.959 17 N -0.336 5.336 18 C 0.138 3.862 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.134 4.134 23 C 0.099 3.901 24 F -0.110 7.110 25 N -0.255 5.255 26 H 0.006 0.994 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -6.611 -23.257 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.306 5.306 13 C 0.004 3.996 14 C -0.068 4.068 15 C -0.275 4.275 16 C -0.099 4.099 17 N -0.111 5.111 18 C 0.043 3.957 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.153 4.153 23 C 0.078 3.922 24 F -0.088 7.088 25 N -0.074 5.074 26 H 0.025 0.975 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.171 0.829 34 H 0.192 0.808 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.099 -6.198 -22.584 25.125 hybrid contribution -1.618 -0.401 0.564 1.760 sum 7.481 -6.600 -22.020 24.174 Atomic orbital electron populations 1.22446 1.00570 0.99290 1.00604 1.19212 0.89640 0.94543 0.86161 0.94615 1.21201 1.29961 1.12403 0.89519 0.91873 1.24941 0.95384 0.95237 0.99014 1.69890 1.37492 1.23283 1.23193 0.86449 0.78478 0.79697 0.82832 1.19746 1.21132 1.21247 1.60792 1.58421 1.08792 1.02592 1.20315 0.98431 0.94642 0.86229 1.22837 0.90131 0.97104 0.96736 1.21591 1.00812 1.07924 0.97163 1.22480 0.83593 1.02618 1.01234 1.45871 1.03296 1.42784 1.19157 1.17688 0.83742 1.00234 0.93999 1.20731 1.00547 0.99482 0.93537 1.20988 0.91382 0.99922 1.00131 1.21042 0.98245 0.98142 0.95267 1.21160 0.97543 1.00088 0.96497 1.17394 0.92148 0.97271 0.85420 1.91654 1.96610 1.75333 1.45226 1.77848 1.20220 1.13372 0.95934 0.97479 0.89161 0.95268 0.93162 0.85635 0.93824 0.90005 0.82884 0.80813 0.84432 0.84498 0.84573 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.45 2.57 -68.86 -0.18 5.27 16 3 H 0.04 1.00 7.80 -51.93 -0.40 0.60 16 4 C -0.49 -14.06 8.84 -34.44 -0.30 -14.37 16 5 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 6 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.49 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.68 -15.18 6.22 -109.21 -0.68 -15.86 16 13 C 0.14 2.61 6.04 -4.97 -0.03 2.58 16 14 C 0.10 1.81 6.73 -82.37 -0.55 1.26 16 15 C -0.25 -3.51 10.74 -39.99 -0.43 -3.94 16 16 C 0.04 0.52 10.80 -17.10 -0.18 0.33 16 17 N -0.34 -5.18 3.80 -10.65 -0.04 -5.22 16 18 C 0.14 1.81 6.69 -83.51 -0.56 1.25 16 19 C -0.12 -1.08 9.45 -39.42 -0.37 -1.45 16 20 C -0.11 -0.71 10.04 -39.60 -0.40 -1.11 16 21 C -0.11 -0.76 10.04 -39.56 -0.40 -1.16 16 22 C -0.13 -1.28 10.02 -39.54 -0.40 -1.68 16 23 C 0.10 1.35 7.29 -39.25 -0.29 1.06 16 24 F -0.11 -1.89 15.54 2.25 0.03 -1.86 16 25 N -0.26 -4.88 10.80 33.69 0.36 -4.51 16 26 H 0.01 0.13 7.45 -51.93 -0.39 -0.25 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 28 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.33 6.98 8.46 -39.29 -0.33 6.65 16 31 H 0.04 0.77 7.44 -51.93 -0.39 0.39 16 32 H 0.08 1.66 8.06 -51.93 -0.42 1.24 16 33 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 34 H 0.17 1.35 7.04 -52.48 -0.37 0.98 16 35 H 0.14 0.87 6.74 -52.48 -0.35 0.52 16 36 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -33.37 327.60 -8.26 -41.63 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.63 Total: 3.57 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.85 Total: -14.27 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.27 Total: -51.08 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.37 -8.26 -41.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.392 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds