Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.39906 * 125.87824 * 94.71701 * 14 13 12 16 16 C 1.35337 * 107.93024 * 179.82390 * 15 14 13 17 17 N 1.35207 * 107.71099 * 0.43061 * 16 15 14 18 18 C 1.40251 * 126.04494 * 179.72858 * 17 16 15 19 19 C 1.38789 * 120.08253 * 359.69837 * 18 17 16 20 20 C 1.38132 * 119.96010 * 179.71976 * 19 18 17 21 21 C 1.38286 * 120.11136 * 0.55676 * 20 19 18 22 22 C 1.38245 * 120.15492 * 359.72036 * 21 20 19 23 23 C 1.38333 * 120.03906 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.05701 * 179.97438 * 23 22 21 25 25 N 1.30882 * 125.87844 * 275.02317 * 14 13 12 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 31 31 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 32 32 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 33 33 H 1.08005 * 126.03649 * 359.96054 * 15 14 13 34 34 H 1.08005 * 126.13852 * 180.15546 * 16 15 14 35 35 H 1.08005 * 120.02125 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.94360 * 180.27320 * 20 19 18 37 37 H 1.08002 * 119.92368 * 179.73937 * 21 20 19 38 38 H 1.08003 * 119.98201 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.7961 -1.1219 -4.5402 16 6 2.6213 -1.6824 -5.4547 17 7 3.8929 -1.4529 -5.0568 18 6 5.0542 -1.8719 -5.7221 19 6 4.9570 -2.5985 -6.9007 20 6 6.1025 -3.0049 -7.5570 21 6 7.3463 -2.6991 -7.0357 22 6 7.4486 -1.9806 -5.8590 23 6 6.3056 -1.5659 -5.1993 24 9 6.4051 -0.8642 -4.0491 25 7 3.8450 -0.7225 -3.8623 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 1.4496 -1.4980 -1.4101 31 1 1.0871 0.6162 -2.5525 32 1 2.7589 1.0461 -2.1182 33 1 0.7164 -1.1337 -4.5669 34 1 2.3183 -2.2206 -6.3408 35 1 3.9863 -2.8423 -7.3066 36 1 6.0265 -3.5665 -8.4764 37 1 8.2399 -3.0220 -7.5491 38 1 8.4214 -1.7430 -5.4546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609449196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = 49.910609 kcal Electronic energy + Delta-G solvation = -21776.503154 eV Core-core repulsion = 18341.655404 eV Total energy + Delta-G solvation = -3434.847750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85466 -42.51749 -39.85896 -37.92148 -35.22519 -34.09317 -31.83636 -31.56608 -30.79411 -29.44297 -27.26901 -26.33838 -24.48539 -23.41823 -22.19272 -21.78315 -20.84654 -19.39441 -18.42781 -18.08389 -17.15343 -16.99149 -16.79695 -16.40940 -16.00830 -15.82734 -15.36736 -15.17541 -14.96196 -14.66189 -14.34785 -14.15184 -13.86635 -13.64593 -13.37092 -13.08132 -12.92819 -12.84012 -12.70543 -12.40245 -12.21558 -12.16231 -11.95591 -11.54161 -11.26703 -11.04901 -10.49927 -10.15127 -9.92994 -9.09705 -8.96539 -8.11112 -6.22136 -0.28970 0.09787 1.13256 1.34381 1.40044 1.41512 1.54495 1.69308 2.43634 2.59357 3.08320 3.16703 3.36980 3.63170 3.77600 3.87478 3.94721 4.16153 4.26973 4.29181 4.52252 4.55600 4.66912 4.72403 4.76636 4.91347 4.92222 4.98329 5.07098 5.11134 5.20253 5.35038 5.40536 5.52713 5.68847 5.73477 5.81264 6.17600 6.25467 6.60772 6.62858 6.78387 6.91770 7.47443 8.94570 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003327 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.570997 B = 8414.232608 C = 9220.297294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.684 5.684 13 C 0.143 3.857 14 C 0.077 3.923 15 C -0.261 4.261 16 C 0.060 3.940 17 N -0.337 5.337 18 C 0.097 3.903 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.093 4.093 22 C -0.139 4.139 23 C 0.050 3.950 24 F -0.147 7.147 25 N -0.313 5.313 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.178 0.822 34 H 0.229 0.771 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 -9.086 -26.528 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.316 5.316 13 C 0.012 3.988 14 C -0.090 4.090 15 C -0.289 4.289 16 C -0.081 4.081 17 N -0.113 5.113 18 C 0.004 3.996 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.111 4.111 22 C -0.158 4.158 23 C 0.028 3.972 24 F -0.126 7.126 25 N -0.133 5.133 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.195 0.805 34 H 0.246 0.754 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.218 -8.674 -25.872 28.802 hybrid contribution -1.493 0.299 1.361 2.043 sum 7.724 -8.375 -24.511 27.029 Atomic orbital electron populations 1.22222 0.99120 0.99568 1.00528 1.18964 0.90632 0.92609 0.86882 0.97936 1.21454 1.30476 1.12434 0.91281 0.93386 1.25693 0.95436 0.95912 1.01758 1.70004 1.37907 1.24111 1.24016 0.85464 0.78177 0.78484 0.79206 1.19836 1.20640 1.20002 1.60595 1.58524 1.09477 1.02967 1.20142 0.98832 0.93736 0.86087 1.22645 0.90888 0.98368 0.97122 1.21857 1.02049 1.08343 0.96683 1.23303 0.81972 1.00921 1.01860 1.46033 1.05101 1.42011 1.18184 1.18255 0.82796 1.02684 0.95882 1.21211 1.03007 0.97553 0.91537 1.21585 0.90227 0.98279 1.00777 1.21581 1.00245 0.95699 0.93604 1.21443 0.96781 1.00217 0.97351 1.18076 0.94243 0.99313 0.85528 1.91547 1.96881 1.76656 1.47508 1.77730 1.21225 1.15643 0.98716 0.94861 0.91771 0.94663 0.92865 0.84847 0.92041 0.92466 0.80506 0.75427 0.81315 0.80006 0.80698 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 8.94 71.98 0.64 -6.93 16 2 C 0.22 11.65 2.57 44.17 0.11 11.77 16 3 H 0.00 0.16 7.80 -2.39 -0.02 0.14 16 4 C -0.52 -30.63 8.84 25.60 0.23 -30.40 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -54.57 11.32 21.45 0.24 -54.33 16 8 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 9 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.68 -32.13 6.22 -499.43 -3.11 -35.24 16 13 C 0.14 5.81 6.04 85.56 0.52 6.33 16 14 C 0.08 2.87 6.73 43.10 0.29 3.16 16 15 C -0.26 -7.17 10.74 22.00 0.24 -6.93 16 16 C 0.06 1.38 10.80 83.50 0.90 2.28 16 17 N -0.34 -10.37 3.80 -187.59 -0.71 -11.08 16 18 C 0.10 2.47 6.69 38.12 0.26 2.72 16 19 C -0.11 -1.56 9.45 22.38 0.21 -1.35 16 20 C -0.09 -0.75 10.04 22.26 0.22 -0.53 16 21 C -0.09 -0.93 10.04 22.28 0.22 -0.71 16 22 C -0.14 -2.53 10.02 22.29 0.22 -2.31 16 23 C 0.05 1.40 7.29 22.48 0.16 1.56 16 24 F -0.15 -5.57 15.54 44.97 0.70 -4.88 16 25 N -0.31 -12.63 10.80 -47.34 -0.51 -13.14 16 26 H 0.03 1.40 7.45 -2.39 -0.02 1.38 16 27 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 28 H 0.03 1.63 8.13 -2.38 -0.02 1.61 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.33 14.65 8.46 -89.70 -0.76 13.89 16 31 H 0.06 2.23 7.44 -2.39 -0.02 2.21 16 32 H 0.06 2.54 8.06 -2.39 -0.02 2.52 16 33 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.23 2.37 7.04 -2.91 -0.02 2.35 16 35 H 0.17 1.17 6.74 -2.91 -0.02 1.15 16 36 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -79.29 327.60 3.64 -75.64 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.68 Total: -20.29 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.09 Total: -113.78 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.70 Total: -4.88 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.29 3.64 -75.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.555 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds