Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39750 * 125.83825 * 2 1 4 4 C 1.36129 * 107.82623 * 180.14341 * 3 2 1 5 5 N 1.39417 * 126.21775 * 179.84673 * 4 3 2 6 6 C 1.34780 * 119.99921 * 359.69094 * 5 4 3 7 7 O 1.21616 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.47397 * 120.00009 * 180.02562 * 6 5 4 9 9 C 1.38068 * 126.41613 * 359.97438 * 8 6 5 10 10 N 1.34272 * 107.41340 * 180.28612 * 9 8 6 11 11 H 0.96998 * 125.75261 * 179.71486 * 10 9 8 12 12 N 1.39935 * 108.49235 * 359.57809 * 10 9 8 13 13 C 1.30456 * 108.89989 * 0.43452 * 12 10 9 14 14 C 1.50699 * 125.98413 * 179.78094 * 13 12 10 15 15 N 1.35263 * 107.56585 * 359.58542 * 4 3 2 16 16 C 1.46498 * 126.04992 * 180.24148 * 15 4 3 17 17 C 1.50693 * 109.47077 * 89.99875 * 16 15 4 18 18 H 1.07996 * 120.00422 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99927 * 180.02562 * 17 16 15 20 20 N 1.31506 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47542 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47125 * 119.99697 * 21 19 17 24 24 H 1.48505 * 109.47377 * 239.99716 * 21 19 17 25 25 N 1.30851 * 125.83890 * 179.67531 * 2 1 3 26 26 H 1.09002 * 109.46948 * 270.29806 * 1 2 3 27 27 H 1.08992 * 109.47389 * 30.29942 * 1 2 3 28 28 H 1.09004 * 109.47023 * 150.30151 * 1 2 3 29 29 H 1.08003 * 126.08967 * 0.02620 * 3 2 1 30 30 H 0.97000 * 119.99732 * 179.69452 * 5 4 3 31 31 H 1.08002 * 126.28972 * 0.02562 * 9 8 6 32 32 H 1.08996 * 109.47219 * 269.95499 * 14 13 12 33 33 H 1.09003 * 109.47294 * 29.95644 * 14 13 12 34 34 H 1.09003 * 109.46764 * 149.95297 * 14 13 12 35 35 H 1.09002 * 109.47195 * 210.00247 * 16 15 4 36 36 H 1.09009 * 109.46771 * 329.99912 * 16 15 4 37 37 H 0.97007 * 119.99912 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0032 5 7 4.7510 1.5269 -0.0074 6 6 4.6154 2.8679 -0.0147 7 8 3.5064 3.3670 -0.0182 8 6 5.8113 3.7295 -0.0196 9 6 7.1258 3.3071 -0.0170 10 7 7.9003 4.4040 -0.0169 11 1 8.8702 4.4129 -0.0114 12 7 7.0723 5.5320 -0.0293 13 6 5.8273 5.1423 -0.0274 14 6 4.6180 6.0415 -0.0335 15 7 3.6093 -0.6406 0.0041 16 6 4.7870 -1.5119 0.0088 17 6 5.1909 -1.8028 1.4311 18 1 4.6266 -1.3813 2.2498 19 6 6.2811 -2.6073 1.6874 20 7 6.9686 -3.1202 0.6906 21 14 6.7821 -2.9674 3.4505 22 1 5.8540 -2.2750 4.3803 23 1 6.7247 -4.4315 3.6923 24 1 8.1664 -2.4816 3.6809 25 7 2.2731 -1.0607 0.0060 26 1 -0.3633 0.0053 1.0277 27 1 -0.3634 0.8872 -0.5184 28 1 -0.3633 -0.8927 -0.5092 29 1 1.9902 2.1597 0.0004 30 1 5.6355 1.1288 -0.0050 31 1 7.4681 2.2828 -0.0113 32 1 4.3255 6.2641 0.9927 33 1 4.8579 6.9697 -0.5523 34 1 3.7958 5.5413 -0.5453 35 1 4.5498 -2.4462 -0.5000 36 1 5.6084 -1.0152 -0.5078 37 1 7.7353 -3.6864 0.8709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609569000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = 109.033622 kcal Electronic energy + Delta-G solvation = -22436.503978 eV Core-core repulsion = 19024.139956 eV Total energy + Delta-G solvation = -3412.364022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58352 -40.64586 -38.70791 -34.73554 -33.79254 -33.04230 -32.08089 -30.74835 -29.07705 -28.24073 -27.77523 -26.02887 -23.68668 -22.80626 -21.32902 -20.16149 -19.58837 -19.16623 -18.12073 -16.88267 -16.49367 -16.11423 -15.50843 -14.91769 -14.68420 -14.49831 -14.26974 -13.84669 -13.78245 -13.04085 -12.86690 -12.81770 -12.75655 -12.48585 -12.11915 -12.04465 -11.76110 -11.57896 -11.10436 -11.04499 -10.93026 -10.37839 -10.31562 -9.86353 -9.80415 -9.67024 -9.43153 -8.99364 -8.76050 -7.88547 -7.37511 -6.36832 -4.44908 1.32408 1.99291 2.50430 2.74009 2.95579 3.11434 3.21116 3.27557 3.42871 3.78727 3.85291 4.21859 4.35315 4.52213 4.96538 5.00758 5.14148 5.29661 5.39935 5.65388 5.68075 5.77213 5.91759 6.07060 6.18990 6.23251 6.32663 6.36522 6.49312 6.72127 6.83820 6.90270 7.04904 7.36066 7.55337 7.58584 7.68536 7.77743 7.97275 8.40114 8.62408 8.72788 9.22810 10.70113 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.005861 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.539969 B = 4776.125654 C = 6772.481938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.294 4.294 4 C 0.305 3.695 5 N -0.638 5.638 6 C 0.601 3.399 7 O -0.516 6.516 8 C -0.284 4.284 9 C 0.113 3.887 10 N -0.460 5.460 11 H 0.445 0.555 12 N -0.303 5.303 13 C 0.139 3.861 14 C -0.079 4.079 15 N -0.346 5.346 16 C 0.257 3.743 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.891 5.891 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.281 1.281 25 N -0.287 5.287 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.163 0.837 30 H 0.412 0.588 31 H 0.191 0.809 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 13.419 -2.569 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.326 4.326 4 C 0.082 3.918 5 N -0.285 5.285 6 C 0.389 3.611 7 O -0.391 6.391 8 C -0.300 4.300 9 C -0.041 4.041 10 N -0.164 5.164 11 H 0.290 0.710 12 N -0.126 5.126 13 C -0.029 4.029 14 C -0.138 4.138 15 N -0.132 5.132 16 C 0.139 3.861 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.207 1.207 25 N -0.112 5.112 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.180 0.820 30 H 0.248 0.752 31 H 0.208 0.792 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.788 13.340 -2.623 13.619 hybrid contribution 1.302 -0.681 1.012 1.784 sum 2.091 12.660 -1.611 12.932 Atomic orbital electron populations 1.20014 0.87632 1.02293 1.02118 1.22030 0.96489 0.91100 1.01841 1.21284 0.89003 1.00477 1.21848 1.17886 0.88005 0.83257 1.02641 1.42582 1.08006 1.05400 1.72471 1.17048 0.88064 0.80133 0.75863 1.90669 1.25793 1.73601 1.49049 1.20088 0.92156 0.93942 1.23766 1.23341 0.90946 0.94111 0.95670 1.46085 1.09651 1.03669 1.56979 0.71027 1.77165 1.01215 1.07397 1.26832 1.22477 0.93594 0.92253 0.94584 1.20379 0.92497 0.97169 1.03742 1.49314 1.06504 1.02165 1.55194 1.19598 0.77903 0.89800 0.98825 1.21408 1.13106 1.31708 0.91441 0.91609 1.24930 0.95750 0.94892 0.98121 1.69927 1.19198 1.32686 1.31053 0.86324 0.78278 0.78505 0.83761 1.19518 1.20508 1.20720 1.77345 0.86115 1.21830 1.25924 0.91350 0.91130 0.91625 0.81987 0.75216 0.79243 0.90020 0.91037 0.88355 0.92558 0.93936 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.01 7.21 -82.45 -0.59 0.42 16 3 C -0.29 -6.01 9.58 -39.77 -0.38 -6.40 16 4 C 0.30 6.40 7.66 -153.21 -1.17 5.23 16 5 N -0.64 -11.12 5.40 -12.45 -0.07 -11.19 16 6 C 0.60 9.83 7.78 -12.53 -0.10 9.73 16 7 O -0.52 -9.35 12.04 5.26 0.06 -9.28 16 8 C -0.28 -3.84 6.13 -105.07 -0.64 -4.49 16 9 C 0.11 1.17 11.52 -16.55 -0.19 0.98 16 10 N -0.46 -4.40 7.29 30.86 0.22 -4.17 16 11 H 0.44 2.61 8.96 -182.72 -1.64 0.97 16 12 N -0.30 -3.78 12.63 33.90 0.43 -3.35 16 13 C 0.14 1.82 7.26 -82.02 -0.60 1.22 16 14 C -0.08 -0.88 9.92 36.01 0.36 -0.53 16 15 N -0.35 -8.05 3.60 -61.58 -0.22 -8.27 16 16 C 0.26 6.29 6.01 -5.20 -0.03 6.26 16 17 C -0.54 -14.19 9.39 -34.44 -0.32 -14.51 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -23.74 13.29 55.43 0.74 -23.01 16 21 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 N -0.29 -6.67 12.56 33.65 0.42 -6.24 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.16 3.20 5.82 -52.48 -0.31 2.89 16 30 H 0.41 6.44 6.88 -40.82 -0.28 6.15 16 31 H 0.19 1.44 7.46 -52.49 -0.39 1.05 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.19 6.55 -51.93 -0.34 0.85 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.04 0.99 7.50 -51.92 -0.39 0.60 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -32.80 324.18 -7.37 -40.17 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.43 Total: 6.19 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.40 Total: -0.99 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 1.52 Total: -56.24 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.06 Total: -9.28 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.80 -7.37 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609569000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.204 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds