Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39750 * 125.83825 * 2 1 4 4 C 1.36129 * 107.82623 * 180.14341 * 3 2 1 5 5 N 1.39417 * 126.21775 * 179.84673 * 4 3 2 6 6 C 1.34780 * 119.99921 * 359.69094 * 5 4 3 7 7 O 1.21616 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.47397 * 120.00009 * 180.02562 * 6 5 4 9 9 C 1.38068 * 126.41613 * 359.97438 * 8 6 5 10 10 N 1.34272 * 107.41340 * 180.28612 * 9 8 6 11 11 H 0.96998 * 125.75261 * 179.71486 * 10 9 8 12 12 N 1.39935 * 108.49235 * 359.57809 * 10 9 8 13 13 C 1.30456 * 108.89989 * 0.43452 * 12 10 9 14 14 C 1.50699 * 125.98413 * 179.78094 * 13 12 10 15 15 N 1.35263 * 107.56585 * 359.58542 * 4 3 2 16 16 C 1.46498 * 126.04992 * 180.24148 * 15 4 3 17 17 C 1.50693 * 109.47077 * 89.99875 * 16 15 4 18 18 H 1.07996 * 120.00422 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99927 * 180.02562 * 17 16 15 20 20 N 1.31506 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47542 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47125 * 119.99697 * 21 19 17 24 24 H 1.48505 * 109.47377 * 239.99716 * 21 19 17 25 25 N 1.30851 * 125.83890 * 179.67531 * 2 1 3 26 26 H 1.09002 * 109.46948 * 270.29806 * 1 2 3 27 27 H 1.08992 * 109.47389 * 30.29942 * 1 2 3 28 28 H 1.09004 * 109.47023 * 150.30151 * 1 2 3 29 29 H 1.08003 * 126.08967 * 0.02620 * 3 2 1 30 30 H 0.97000 * 119.99732 * 179.69452 * 5 4 3 31 31 H 1.08002 * 126.28972 * 0.02562 * 9 8 6 32 32 H 1.08996 * 109.47219 * 269.95499 * 14 13 12 33 33 H 1.09003 * 109.47294 * 29.95644 * 14 13 12 34 34 H 1.09003 * 109.46764 * 149.95297 * 14 13 12 35 35 H 1.09002 * 109.47195 * 210.00247 * 16 15 4 36 36 H 1.09009 * 109.46771 * 329.99912 * 16 15 4 37 37 H 0.97007 * 119.99912 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0032 5 7 4.7510 1.5269 -0.0074 6 6 4.6154 2.8679 -0.0147 7 8 3.5064 3.3670 -0.0182 8 6 5.8113 3.7295 -0.0196 9 6 7.1258 3.3071 -0.0170 10 7 7.9003 4.4040 -0.0169 11 1 8.8702 4.4129 -0.0114 12 7 7.0723 5.5320 -0.0293 13 6 5.8273 5.1423 -0.0274 14 6 4.6180 6.0415 -0.0335 15 7 3.6093 -0.6406 0.0041 16 6 4.7870 -1.5119 0.0088 17 6 5.1909 -1.8028 1.4311 18 1 4.6266 -1.3813 2.2498 19 6 6.2811 -2.6073 1.6874 20 7 6.9686 -3.1202 0.6906 21 14 6.7821 -2.9674 3.4505 22 1 5.8540 -2.2750 4.3803 23 1 6.7247 -4.4315 3.6923 24 1 8.1664 -2.4816 3.6809 25 7 2.2731 -1.0607 0.0060 26 1 -0.3633 0.0053 1.0277 27 1 -0.3634 0.8872 -0.5184 28 1 -0.3633 -0.8927 -0.5092 29 1 1.9902 2.1597 0.0004 30 1 5.6355 1.1288 -0.0050 31 1 7.4681 2.2828 -0.0113 32 1 4.3255 6.2641 0.9927 33 1 4.8579 6.9697 -0.5523 34 1 3.7958 5.5413 -0.5453 35 1 4.5498 -2.4462 -0.5000 36 1 5.6084 -1.0152 -0.5078 37 1 7.7353 -3.6864 0.8709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609569000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = 86.885180 kcal Electronic energy + Delta-G solvation = -22437.464406 eV Core-core repulsion = 19024.139956 eV Total energy + Delta-G solvation = -3413.324450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.63910 -42.11685 -40.06403 -36.24167 -35.57869 -34.00059 -33.77496 -31.87969 -30.62878 -29.56201 -28.86435 -27.77202 -25.00009 -24.49192 -22.54334 -21.47001 -20.84236 -20.44182 -19.26263 -18.82267 -18.05186 -17.43256 -16.72328 -16.58471 -16.07459 -15.89129 -15.43473 -15.17129 -15.10689 -14.51928 -14.38326 -14.00914 -13.90799 -13.70440 -13.55348 -13.34756 -13.10028 -12.97575 -12.86884 -12.70088 -12.30601 -12.04262 -11.87588 -11.63841 -11.37574 -10.85161 -10.74783 -10.55657 -9.99108 -9.57718 -8.97254 -8.35029 -6.51807 0.32649 0.90369 1.24808 1.35092 1.39959 1.40740 1.51677 1.79381 1.96123 2.26010 2.37975 2.45225 2.95279 3.36965 3.70709 3.88393 3.97080 4.18279 4.33601 4.42509 4.67037 4.78181 4.81266 4.87273 4.89926 4.93854 4.94143 5.02770 5.03400 5.27911 5.29989 5.46563 5.53666 5.79429 6.02064 6.17791 6.20899 6.33485 6.50511 6.61385 7.05188 7.09979 7.20469 8.71333 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.005861 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.539969 B = 4776.125654 C = 6772.481938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.307 4.307 4 C 0.303 3.697 5 N -0.636 5.636 6 C 0.602 3.398 7 O -0.537 6.537 8 C -0.315 4.315 9 C 0.137 3.863 10 N -0.442 5.442 11 H 0.462 0.538 12 N -0.318 5.318 13 C 0.130 3.870 14 C -0.078 4.078 15 N -0.368 5.368 16 C 0.272 3.728 17 C -0.553 4.553 18 H 0.045 0.955 19 C 0.031 3.969 20 N -0.912 5.912 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.333 5.333 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.170 0.830 30 H 0.418 0.582 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.051 0.949 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 14.303 -1.960 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.338 4.338 4 C 0.080 3.920 5 N -0.283 5.283 6 C 0.393 3.607 7 O -0.414 6.414 8 C -0.330 4.330 9 C -0.019 4.019 10 N -0.147 5.147 11 H 0.311 0.689 12 N -0.141 5.141 13 C -0.038 4.038 14 C -0.136 4.136 15 N -0.153 5.153 16 C 0.153 3.847 17 C -0.591 4.591 18 H 0.064 0.936 19 C -0.171 4.171 20 N -0.550 5.550 21 Si 0.790 3.210 22 H -0.204 1.204 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.158 5.158 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.187 0.813 30 H 0.256 0.744 31 H 0.236 0.764 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.804 14.257 -2.027 14.513 hybrid contribution 1.014 -0.892 0.788 1.564 sum 2.818 13.365 -1.239 13.715 Atomic orbital electron populations 1.20217 0.84000 1.04015 1.03643 1.22878 0.98704 0.90125 0.99054 1.21503 0.89032 1.00875 1.22438 1.18253 0.89498 0.82775 1.01461 1.42686 1.07408 1.05548 1.72662 1.17473 0.88808 0.79655 0.74795 1.90639 1.26974 1.73746 1.50044 1.19951 0.92233 0.93863 1.26970 1.23707 0.89903 0.95351 0.92917 1.46130 1.10486 1.02825 1.55280 0.68875 1.77136 1.01144 1.08492 1.27376 1.22737 0.94270 0.92333 0.94454 1.20384 0.91596 0.97511 1.04126 1.49145 1.06297 1.02803 1.57071 1.19236 0.78715 0.89035 0.97738 1.21430 1.13523 1.32551 0.91642 0.93620 1.25607 0.95416 0.94285 1.01754 1.69989 1.19505 1.32794 1.32752 0.85394 0.78451 0.78119 0.79014 1.20362 1.20310 1.18781 1.77295 0.86460 1.23620 1.28407 0.89771 0.88561 0.90740 0.81287 0.74395 0.76352 0.89489 0.89336 0.89689 0.95563 0.93092 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.95 16 2 C 0.06 2.30 7.21 43.07 0.31 2.61 16 3 C -0.31 -12.54 9.58 22.14 0.21 -12.33 16 4 C 0.30 12.86 7.66 131.34 1.01 13.86 16 5 N -0.64 -22.06 5.40 -311.54 -1.68 -23.74 16 6 C 0.60 19.48 7.78 86.65 0.67 20.16 16 7 O -0.54 -19.48 12.04 -4.08 -0.05 -19.53 16 8 C -0.31 -8.14 6.13 -20.15 -0.12 -8.26 16 9 C 0.14 2.52 11.52 84.28 0.97 3.49 16 10 N -0.44 -7.29 7.29 -56.29 -0.41 -7.70 16 11 H 0.46 4.00 8.96 -213.43 -1.91 2.08 16 12 N -0.32 -7.32 12.63 -46.67 -0.59 -7.91 16 13 C 0.13 3.24 7.26 43.51 0.32 3.56 16 14 C -0.08 -1.67 9.92 71.24 0.71 -0.97 16 15 N -0.37 -17.50 3.60 -348.75 -1.26 -18.75 16 16 C 0.27 13.67 6.01 85.63 0.51 14.19 16 17 C -0.55 -29.58 9.39 25.60 0.24 -29.34 16 18 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 19 C 0.03 1.61 5.46 84.66 0.46 2.07 16 20 N -0.91 -48.28 13.29 21.45 0.28 -47.99 16 21 Si 0.97 41.05 29.54 68.60 2.03 43.08 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 N -0.33 -15.77 12.56 -47.45 -0.60 -16.36 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.17 6.64 5.82 -2.91 -0.02 6.62 16 30 H 0.42 12.88 6.88 -92.71 -0.64 12.24 16 31 H 0.22 2.65 7.46 -2.91 -0.02 2.63 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.06 6.55 -2.39 -0.02 2.04 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.05 2.42 7.50 -2.38 -0.02 2.41 16 37 H 0.27 13.52 8.31 -92.70 -0.77 12.75 16 Total: -1.00 -70.98 324.18 2.35 -68.64 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -1.41 Total: 22.18 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.03 Total: 8.10 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -4.25 Total: -122.46 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -70.98 2.35 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609569000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.522 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds