Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39564 * 125.92297 * 2 1 4 4 C 1.39476 * 107.42357 * 179.97438 * 3 2 1 5 5 C 1.38764 * 119.84967 * 180.02562 * 4 3 2 6 6 C 1.38131 * 119.95251 * 359.97438 * 5 4 3 7 7 C 1.38369 * 120.27100 * 359.97438 * 6 5 4 8 8 C 1.38341 * 120.22504 * 0.02562 * 7 6 5 9 9 F 1.35095 * 120.06749 * 180.02562 * 8 7 6 10 10 N 1.39430 * 107.43136 * 359.74300 * 4 3 2 11 11 H 0.97000 * 125.90096 * 180.27665 * 10 4 3 12 12 C 1.37152 * 125.92111 * 179.97438 * 2 1 3 13 13 N 1.30646 * 125.61038 * 0.02562 * 12 2 1 14 14 C 1.46499 * 120.00084 * 174.63081 * 13 12 2 15 15 C 1.53001 * 109.47556 * 116.82041 * 14 13 12 16 16 C 1.50693 * 115.55216 * 80.78214 * 15 14 13 17 17 H 1.08000 * 120.00467 * 219.56612 * 16 15 14 18 18 C 1.37880 * 119.99968 * 39.56131 * 16 15 14 19 19 N 1.31515 * 119.99940 * 17.43408 * 18 16 15 20 20 Si 1.86798 * 120.00229 * 197.43852 * 18 16 15 21 21 H 1.48501 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47386 * 120.00206 * 20 18 16 23 23 H 1.48507 * 109.46949 * 239.99990 * 20 18 16 24 24 C 1.53005 * 117.49715 * 295.11899 * 15 14 13 25 25 C 1.52997 * 60.03167 * 252.49590 * 24 15 14 26 26 H 1.09006 * 109.47153 * 275.29690 * 1 2 3 27 27 H 1.09004 * 109.47236 * 35.29230 * 1 2 3 28 28 H 1.08999 * 109.47390 * 155.30012 * 1 2 3 29 29 H 1.07997 * 120.02107 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.86398 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.88409 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47027 * 356.81872 * 14 13 12 33 33 H 1.08998 * 109.47108 * 236.82062 * 14 13 12 34 34 H 0.97002 * 120.00506 * 184.97088 * 19 18 16 35 35 H 1.09004 * 117.49610 * 359.97438 * 24 15 14 36 36 H 1.08993 * 117.50097 * 144.99394 * 24 15 14 37 37 H 1.08999 * 117.50146 * 107.49915 * 25 24 15 38 38 H 1.08999 * 117.50189 * 252.52080 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2838 1.1302 0.0000 4 6 3.6065 0.6876 0.0006 5 6 4.6433 1.6099 0.0013 6 6 4.3633 2.9625 0.0008 7 6 3.0516 3.4032 -0.0009 8 6 2.0108 2.4919 -0.0015 9 9 0.7314 2.9257 -0.0037 10 7 3.5805 -0.7064 0.0069 11 1 4.3555 -1.2897 0.0125 12 6 2.2696 -1.1107 0.0005 13 7 1.8557 -2.3499 0.0006 14 6 2.8218 -3.4448 -0.1176 15 6 2.7861 -4.2960 1.1533 16 6 1.6693 -5.3048 1.2288 17 1 1.1570 -5.4744 2.1644 18 6 1.3012 -6.0113 0.1035 19 7 2.1135 -6.0733 -0.9289 20 14 -0.3514 -6.8802 0.0451 21 1 -1.0726 -6.6586 1.3242 22 1 -1.1567 -6.3375 -1.0783 23 1 -0.1383 -8.3360 -0.1567 24 6 3.2296 -3.6340 2.4595 25 6 4.1263 -4.6759 1.7879 26 1 -0.3634 0.0949 1.0233 27 1 -0.3634 0.8388 -0.5937 28 1 -0.3634 -0.9336 -0.4294 29 1 5.6685 1.2703 0.0021 30 1 5.1714 3.6790 0.0009 31 1 2.8398 4.4623 -0.0008 32 1 3.8224 -3.0336 -0.2515 33 1 2.5655 -4.0643 -0.9770 34 1 1.8262 -6.5086 -1.7468 35 1 3.5472 -2.5923 2.4133 36 1 2.7136 -3.9282 3.3734 37 1 5.0335 -4.3196 1.2998 38 1 4.2000 -5.6558 2.2596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619697981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = 58.058090 kcal Electronic energy + Delta-G solvation = -22732.804690 eV Core-core repulsion = 19298.310242 eV Total energy + Delta-G solvation = -3434.494448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85439 -42.76194 -38.94019 -38.10066 -35.67684 -34.37377 -34.20041 -31.00695 -29.94884 -28.51147 -27.72383 -26.54644 -23.71179 -23.09034 -22.90504 -21.69857 -20.71244 -19.27334 -18.69220 -18.08706 -17.19740 -17.03906 -16.69016 -16.58870 -16.36638 -16.13297 -15.84895 -15.53048 -15.05775 -14.90734 -14.28363 -14.06013 -13.80320 -13.62139 -13.45144 -12.93118 -12.80934 -12.65786 -12.60687 -12.49800 -12.32719 -12.14069 -11.60049 -11.46447 -11.26182 -10.64845 -10.38656 -10.13530 -9.88394 -9.22750 -8.19499 -8.05470 -6.13374 0.11408 0.36708 1.35963 1.37821 1.41960 1.52453 1.85820 2.18730 2.44111 2.65023 2.99424 3.20882 3.51992 3.64803 3.90206 3.94873 4.05675 4.25254 4.36243 4.39093 4.43472 4.49784 4.60916 4.64730 4.75707 4.80914 4.83932 4.96562 5.07438 5.16060 5.29278 5.35376 5.45836 5.48516 5.59016 5.71386 5.85862 6.02092 6.09791 6.40750 6.51801 6.82016 7.44830 7.50365 8.91291 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023130 B = 0.004513 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.244378 B = 6203.123904 C = 6952.865589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.533 5.533 3 C 0.042 3.958 4 C 0.110 3.890 5 C -0.122 4.122 6 C -0.073 4.073 7 C -0.142 4.142 8 C 0.085 3.915 9 F -0.145 7.145 10 N -0.670 5.670 11 H 0.433 0.567 12 C 0.558 3.442 13 N -0.620 5.620 14 C 0.125 3.875 15 C 0.034 3.966 16 C -0.495 4.495 17 H 0.041 0.959 18 C 0.035 3.965 19 N -0.897 5.897 20 Si 0.942 3.058 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.279 1.279 24 C -0.186 4.186 25 C -0.195 4.195 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.008 0.992 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 21.449 -0.366 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.241 5.241 3 C -0.060 4.060 4 C 0.006 3.994 5 C -0.144 4.144 6 C -0.093 4.093 7 C -0.162 4.162 8 C 0.062 3.938 9 F -0.123 7.123 10 N -0.304 5.304 11 H 0.275 0.725 12 C 0.195 3.805 13 N -0.358 5.358 14 C -0.004 4.004 15 C 0.032 3.968 16 C -0.532 4.532 17 H 0.059 0.941 18 C -0.165 4.165 19 N -0.535 5.535 20 Si 0.768 3.232 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.224 4.224 25 C -0.233 4.233 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.199 0.801 31 H 0.188 0.812 32 H 0.026 0.974 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.139 20.636 -0.483 21.053 hybrid contribution -0.215 -1.162 0.000 1.182 sum 3.924 19.474 -0.483 19.871 Atomic orbital electron populations 1.21735 0.73986 1.04144 1.02955 1.43653 1.06338 1.01133 1.72975 1.18374 0.89861 0.88185 1.09614 1.18346 0.93594 0.83875 1.03609 1.20587 0.97810 0.91799 1.04231 1.21120 0.96513 0.94320 0.97363 1.21217 0.91067 1.00184 1.03766 1.16897 0.80025 0.87867 1.09034 1.91448 1.36494 1.89898 1.94508 1.43086 1.07390 1.05201 1.74740 0.72470 1.19675 0.78927 0.88228 0.93669 1.72529 1.33761 0.94596 1.34947 1.21168 0.89490 0.89881 0.99881 1.19098 0.92716 0.95528 0.89416 1.20648 1.17054 1.19784 0.95749 0.94063 1.25445 0.99171 0.96103 0.95750 1.70030 1.34774 1.44019 1.04717 0.85770 0.81345 0.78037 0.78021 1.19818 1.20534 1.20487 1.22637 1.05972 0.95649 0.98131 1.23013 0.95718 0.97971 1.06617 0.91604 0.88886 0.90416 0.82502 0.80088 0.81178 0.97418 0.89414 0.92944 0.90947 0.91387 0.90054 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.35 10.75 127.77 1.37 4.73 16 2 N -0.53 -18.16 3.26 -541.49 -1.77 -19.92 16 3 C 0.04 1.21 6.82 38.36 0.26 1.47 16 4 C 0.11 2.90 7.22 38.36 0.28 3.18 16 5 C -0.12 -2.08 10.07 22.37 0.23 -1.85 16 6 C -0.07 -0.89 10.03 22.28 0.22 -0.66 16 7 C -0.14 -2.14 10.01 22.33 0.22 -1.91 16 8 C 0.09 1.97 7.32 22.45 0.16 2.14 16 9 F -0.14 -3.48 16.02 44.97 0.72 -2.76 16 10 N -0.67 -21.41 5.98 -189.59 -1.13 -22.54 16 11 H 0.43 12.87 7.31 -92.71 -0.68 12.19 16 12 C 0.56 21.84 8.39 260.72 2.19 24.03 16 13 N -0.62 -29.30 10.29 -349.69 -3.60 -32.90 16 14 C 0.13 6.26 6.06 86.38 0.52 6.78 16 15 C 0.03 1.76 1.89 -52.90 -0.10 1.65 16 16 C -0.50 -28.84 8.98 25.60 0.23 -28.61 16 17 H 0.04 2.45 7.87 -2.91 -0.02 2.43 16 18 C 0.04 2.01 5.11 84.66 0.43 2.44 16 19 N -0.90 -52.05 11.12 21.45 0.24 -51.82 16 20 Si 0.94 45.44 29.58 68.60 2.03 47.46 16 21 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 C -0.19 -8.58 9.91 30.59 0.30 -8.28 16 25 C -0.19 -9.09 9.89 30.62 0.30 -8.78 16 26 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.09 2.29 7.28 -2.38 -0.02 2.27 16 28 H 0.08 2.56 7.95 -2.39 -0.02 2.54 16 29 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.01 0.34 5.92 -2.38 -0.01 0.33 16 33 H 0.09 5.01 5.49 -2.39 -0.01 5.00 16 34 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 35 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.08 3.40 8.08 -2.39 -0.02 3.38 16 38 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -69.83 324.99 3.53 -66.29 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.42 Total: 19.86 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.63 Total: -3.67 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.26 Total: -127.18 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.72 Total: -2.76 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.83 3.53 -66.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619697981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.350 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds