Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00090 * 3 2 1 5 5 H 1.48495 * 109.47090 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.47086 * 150.00227 * 3 2 1 7 7 C 1.37878 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99534 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47075 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47478 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00323 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00120 * 180.02562 * 12 11 10 15 15 O 1.42902 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.35895 * 116.99970 * 179.97438 * 15 14 12 17 17 C 1.38748 * 120.09186 * 0.02562 * 16 15 14 18 18 C 1.38006 * 119.87745 * 180.02562 * 17 16 15 19 19 C 1.38542 * 120.29202 * 359.97438 * 18 17 16 20 20 C 1.38266 * 119.93797 * 0.02562 * 19 18 17 21 21 C 1.38416 * 119.90274 * 0.02562 * 20 19 18 22 22 C 1.51383 * 109.75351 * 180.02562 * 20 19 18 23 23 C 1.54339 * 105.17324 * 342.80716 * 22 20 19 24 24 C 1.51698 * 130.24225 * 179.84274 * 19 18 17 25 25 H 0.97006 * 120.00032 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47323 * 60.00523 * 9 7 2 27 27 H 1.08999 * 109.47776 * 299.99971 * 9 7 2 28 28 H 1.08998 * 109.46801 * 59.99979 * 10 9 7 29 29 H 1.08997 * 109.47298 * 300.00204 * 10 9 7 30 30 H 0.97001 * 119.99808 * 0.02562 * 11 10 9 31 31 H 1.09006 * 109.47032 * 60.00060 * 14 12 11 32 32 H 1.08997 * 109.46963 * 300.00031 * 14 12 11 33 33 H 1.08007 * 120.06382 * 0.02562 * 17 16 15 34 34 H 1.08006 * 119.85283 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.91041 * 180.02562 * 21 20 19 36 36 H 1.09000 * 110.30267 * 223.87989 * 22 20 19 37 37 H 1.08997 * 110.38024 * 101.77648 * 22 20 19 38 38 H 1.09002 * 110.82153 * 144.59302 * 23 22 20 39 39 H 1.09002 * 110.82354 * 267.94058 * 23 22 20 40 40 H 1.09003 * 110.25235 * 78.27189 * 24 19 18 41 41 H 1.08997 * 110.49495 * 316.02724 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0980 0.0007 13 8 3.3994 -6.0980 0.0012 14 6 1.4330 -7.4031 0.0008 15 8 2.3616 -8.4893 0.0009 16 6 1.8422 -9.7450 0.0015 17 6 0.4669 -9.9290 0.0014 18 6 -0.0558 -11.2062 0.0026 19 6 0.7866 -12.3061 0.0032 20 6 2.1574 -12.1253 0.0033 21 6 2.6847 -10.8455 0.0032 22 6 2.8509 -13.4710 0.0035 23 6 1.7711 -14.4819 0.4438 24 6 0.4633 -13.7882 0.0077 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 0.5427 -4.9308 0.0000 31 1 0.8067 -7.4611 -0.8895 32 1 0.8060 -7.4605 0.8905 33 1 -0.1933 -9.0742 0.0005 34 1 -1.1264 -11.3490 0.0021 35 1 3.7553 -10.7042 0.0029 36 1 3.6791 -13.4695 0.7121 37 1 3.2103 -13.7129 -0.9967 38 1 1.8966 -15.4330 -0.0737 39 1 1.7917 -14.6250 1.5242 40 1 0.1773 -14.1150 -0.9921 41 1 -0.3342 -14.0027 0.7190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701268517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = -66.158664 kcal Electronic energy + Delta-G solvation = -21244.305497 eV Core-core repulsion = 17895.592160 eV Total energy + Delta-G solvation = -3348.713337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72688 -39.51788 -38.29071 -35.11387 -34.81426 -32.91792 -31.74089 -30.27065 -28.81940 -28.40446 -26.90146 -24.58629 -23.07770 -21.45073 -21.10338 -20.88080 -20.12649 -18.03506 -17.10789 -16.46215 -16.41877 -15.96070 -15.85096 -15.42546 -14.98665 -14.61287 -14.54351 -14.38044 -13.63989 -13.32624 -13.24991 -13.19560 -12.62699 -12.49833 -12.32819 -12.20325 -11.79956 -11.54080 -11.51510 -11.25518 -11.06152 -10.89792 -10.74404 -10.67125 -10.38399 -9.85552 -9.52546 -9.24944 -9.01696 -8.63137 -8.41742 -8.20504 -6.12698 -4.15662 1.09536 1.21867 2.63167 2.82003 3.27872 3.34123 3.38396 3.49564 3.79705 4.21379 4.26865 4.39452 4.59602 4.65265 4.74642 4.84393 4.96689 4.97783 5.00311 5.07785 5.22016 5.24563 5.36194 5.38516 5.46876 5.57136 5.62167 5.80418 5.92069 6.06281 6.16581 6.25012 6.28597 6.41886 6.51873 6.66979 6.78767 7.22166 7.46746 7.56173 7.84593 7.87295 8.22990 8.50580 8.90145 9.49427 10.98830 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.058012 B = 0.002113 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.545922 B =13250.641605 C =13683.315050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.718 5.718 12 C 0.507 3.493 13 O -0.527 6.527 14 C 0.041 3.959 15 O -0.287 6.287 16 C 0.135 3.865 17 C -0.210 4.210 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.059 4.059 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.076 4.076 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.399 0.601 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -28.053 0.100 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.291 3.709 13 O -0.403 6.403 14 C -0.038 4.038 15 O -0.200 6.200 16 C 0.089 3.911 17 C -0.229 4.229 18 C -0.084 4.084 19 C -0.141 4.141 20 C -0.059 4.059 21 C -0.157 4.157 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.113 4.113 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.232 -27.846 0.106 27.873 hybrid contribution -0.444 1.170 -0.030 1.252 sum -1.675 -26.676 0.077 26.728 Atomic orbital electron populations 1.69950 1.06092 1.26931 1.50297 1.24999 0.94913 0.99457 0.94933 0.86496 0.79839 0.82910 0.78221 1.20539 1.21151 1.19707 1.21040 0.93288 0.90318 1.51473 0.92185 1.19337 0.94190 0.91036 0.97938 1.21789 0.96106 0.80919 1.01078 1.46194 1.10616 1.06076 1.74083 1.19941 0.88312 0.84759 0.77914 1.90729 1.13620 1.87344 1.48649 1.22569 0.92126 0.85434 1.03694 1.86166 1.34193 1.11317 1.88280 1.18864 0.91811 0.84459 0.95987 1.21181 0.93839 0.98428 1.09441 1.20376 0.99383 0.90807 0.97860 1.20548 0.93829 0.95218 1.04553 1.20303 0.94575 0.93602 0.97467 1.19789 0.99991 0.89071 1.06875 1.21065 0.98159 0.90389 1.02323 1.22290 0.94044 0.97961 1.01534 1.21016 0.98145 0.90382 1.01780 0.92811 0.95843 0.95845 0.92313 0.92311 0.76735 0.89060 0.89055 0.85071 0.85938 0.85186 0.90454 0.89939 0.90566 0.90937 0.90535 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.05 5.56 -60.30 -0.33 -12.38 16 12 C 0.51 8.62 7.91 -10.98 -0.09 8.54 16 13 O -0.53 -11.40 16.50 -14.36 -0.24 -11.64 16 14 C 0.04 0.51 5.22 36.01 0.19 0.70 16 15 O -0.29 -4.27 9.67 -39.32 -0.38 -4.65 16 16 C 0.13 1.71 6.68 -39.26 -0.26 1.45 16 17 C -0.21 -2.21 9.04 -39.48 -0.36 -2.57 16 18 C -0.07 -0.63 10.03 -39.55 -0.40 -1.02 16 19 C -0.14 -1.34 6.15 -104.01 -0.64 -1.98 16 20 C -0.06 -0.60 6.13 -104.21 -0.64 -1.24 16 21 C -0.14 -1.65 9.98 -39.38 -0.39 -2.04 16 22 C -0.08 -0.60 6.77 -26.85 -0.18 -0.78 16 23 C -0.12 -0.70 7.07 -25.33 -0.18 -0.88 16 24 C -0.08 -0.51 6.79 -26.70 -0.18 -0.69 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.40 5.49 8.47 -40.82 -0.35 5.15 16 31 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 32 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 33 H 0.13 1.11 6.31 -52.48 -0.33 0.78 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -33.18 346.61 -9.80 -42.99 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.09 Total: 0.26 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.70 Total: -10.94 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.40 Total: -37.48 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.62 Total: -16.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.18 -9.80 -42.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701268517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.171 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds