Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00090 * 3 2 1 5 5 H 1.48495 * 109.47090 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.47086 * 150.00227 * 3 2 1 7 7 C 1.37878 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99534 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47075 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47478 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00323 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00120 * 180.02562 * 12 11 10 15 15 O 1.42902 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.35895 * 116.99970 * 179.97438 * 15 14 12 17 17 C 1.38748 * 120.09186 * 0.02562 * 16 15 14 18 18 C 1.38006 * 119.87745 * 180.02562 * 17 16 15 19 19 C 1.38542 * 120.29202 * 359.97438 * 18 17 16 20 20 C 1.38266 * 119.93797 * 0.02562 * 19 18 17 21 21 C 1.38416 * 119.90274 * 0.02562 * 20 19 18 22 22 C 1.51383 * 109.75351 * 180.02562 * 20 19 18 23 23 C 1.54339 * 105.17324 * 342.80716 * 22 20 19 24 24 C 1.51698 * 130.24225 * 179.84274 * 19 18 17 25 25 H 0.97006 * 120.00032 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47323 * 60.00523 * 9 7 2 27 27 H 1.08999 * 109.47776 * 299.99971 * 9 7 2 28 28 H 1.08998 * 109.46801 * 59.99979 * 10 9 7 29 29 H 1.08997 * 109.47298 * 300.00204 * 10 9 7 30 30 H 0.97001 * 119.99808 * 0.02562 * 11 10 9 31 31 H 1.09006 * 109.47032 * 60.00060 * 14 12 11 32 32 H 1.08997 * 109.46963 * 300.00031 * 14 12 11 33 33 H 1.08007 * 120.06382 * 0.02562 * 17 16 15 34 34 H 1.08006 * 119.85283 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.91041 * 180.02562 * 21 20 19 36 36 H 1.09000 * 110.30267 * 223.87989 * 22 20 19 37 37 H 1.08997 * 110.38024 * 101.77648 * 22 20 19 38 38 H 1.09002 * 110.82153 * 144.59302 * 23 22 20 39 39 H 1.09002 * 110.82354 * 267.94058 * 23 22 20 40 40 H 1.09003 * 110.25235 * 78.27189 * 24 19 18 41 41 H 1.08997 * 110.49495 * 316.02724 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0980 0.0007 13 8 3.3994 -6.0980 0.0012 14 6 1.4330 -7.4031 0.0008 15 8 2.3616 -8.4893 0.0009 16 6 1.8422 -9.7450 0.0015 17 6 0.4669 -9.9290 0.0014 18 6 -0.0558 -11.2062 0.0026 19 6 0.7866 -12.3061 0.0032 20 6 2.1574 -12.1253 0.0033 21 6 2.6847 -10.8455 0.0032 22 6 2.8509 -13.4710 0.0035 23 6 1.7711 -14.4819 0.4438 24 6 0.4633 -13.7882 0.0077 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 0.5427 -4.9308 0.0000 31 1 0.8067 -7.4611 -0.8895 32 1 0.8060 -7.4605 0.8905 33 1 -0.1933 -9.0742 0.0005 34 1 -1.1264 -11.3490 0.0021 35 1 3.7553 -10.7042 0.0029 36 1 3.6791 -13.4695 0.7121 37 1 3.2103 -13.7129 -0.9967 38 1 1.8966 -15.4330 -0.0737 39 1 1.7917 -14.6250 1.5242 40 1 0.1773 -14.1150 -0.9921 41 1 -0.3342 -14.0027 0.7190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701268517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = -85.703020 kcal Electronic energy + Delta-G solvation = -21245.153004 eV Core-core repulsion = 17895.592160 eV Total energy + Delta-G solvation = -3349.560844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59882 -40.69679 -39.31620 -36.65382 -35.68389 -34.86931 -32.55380 -31.89758 -29.81673 -29.27890 -27.75383 -26.40384 -23.81885 -23.05815 -22.15335 -21.66910 -21.30399 -19.01935 -18.49674 -18.21796 -17.49078 -16.93121 -16.70023 -16.44941 -16.41691 -16.07209 -15.85361 -15.36117 -14.80331 -14.65279 -14.37112 -14.30574 -13.70321 -13.51954 -13.38236 -13.24441 -12.96327 -12.85664 -12.55278 -12.46970 -12.27830 -12.18927 -12.00773 -11.72543 -11.62286 -11.46807 -11.39098 -10.92513 -10.61474 -10.11923 -9.77988 -9.00149 -8.25197 -6.35243 0.33638 0.42323 1.41317 1.41681 1.47102 1.51446 1.55996 2.39038 2.67506 2.72811 3.09768 3.54669 3.63464 3.67516 3.88846 4.04244 4.07473 4.15516 4.21641 4.37111 4.40704 4.44847 4.46664 4.51239 4.75049 4.83029 4.87616 4.97847 5.04115 5.06741 5.20723 5.24221 5.32301 5.37069 5.42486 5.45696 5.57128 5.68604 5.76151 5.79449 6.14834 6.33381 6.54072 6.77652 7.15514 7.33956 8.86405 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.058012 B = 0.002113 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.545922 B =13250.641605 C =13683.315050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.708 5.708 12 C 0.506 3.494 13 O -0.580 6.580 14 C 0.049 3.951 15 O -0.321 6.321 16 C 0.109 3.891 17 C -0.212 4.212 18 C -0.071 4.071 19 C -0.146 4.146 20 C -0.071 4.071 21 C -0.162 4.162 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.076 4.076 25 H 0.266 0.734 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.416 0.584 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -29.559 0.076 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.361 5.361 12 C 0.293 3.707 13 O -0.459 6.459 14 C -0.029 4.029 15 O -0.234 6.234 16 C 0.064 3.936 17 C -0.230 4.230 18 C -0.089 4.089 19 C -0.146 4.146 20 C -0.071 4.071 21 C -0.181 4.181 22 C -0.122 4.122 23 C -0.154 4.154 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.253 0.747 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.575 -29.377 0.081 29.490 hybrid contribution -0.055 1.553 -0.026 1.554 sum -2.630 -27.824 0.056 27.948 Atomic orbital electron populations 1.70044 1.07423 1.28008 1.50916 1.25845 0.95821 1.03007 0.94436 0.85461 0.78611 0.78574 0.78498 1.19803 1.20457 1.19225 1.21464 0.93581 0.91996 1.51627 0.92429 1.19144 0.94186 0.91437 0.96703 1.21277 0.95169 0.81862 0.99995 1.45931 1.11369 1.04940 1.73844 1.20728 0.87867 0.86042 0.76080 1.90704 1.16129 1.88159 1.50926 1.22587 0.91197 0.82384 1.06731 1.86098 1.35741 1.12474 1.89115 1.19078 0.93041 0.83571 0.97921 1.21440 0.92998 0.99811 1.08771 1.20747 1.00824 0.90384 0.96933 1.21031 0.93542 0.96924 1.03148 1.20667 0.95625 0.93880 0.96916 1.19959 0.99772 0.90158 1.08224 1.21180 0.98706 0.89358 1.02967 1.22323 0.92826 0.98230 1.01976 1.21110 0.98937 0.88363 1.02843 0.92511 0.96921 0.96928 0.93474 0.93440 0.74699 0.85816 0.85822 0.82958 0.83328 0.86232 0.90195 0.89182 0.88560 0.90657 0.89430 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 13.29 21.45 0.28 -53.21 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C 0.14 5.97 5.61 86.38 0.48 6.45 16 11 N -0.71 -23.48 5.56 -463.07 -2.57 -26.05 16 12 C 0.51 17.12 7.91 87.66 0.69 17.81 16 13 O -0.58 -25.73 16.50 15.99 0.26 -25.47 16 14 C 0.05 1.15 5.22 71.24 0.37 1.52 16 15 O -0.32 -9.57 9.67 -73.33 -0.71 -10.28 16 16 C 0.11 2.74 6.68 22.48 0.15 2.89 16 17 C -0.21 -4.06 9.04 22.34 0.20 -3.86 16 18 C -0.07 -1.18 10.03 22.29 0.22 -0.95 16 19 C -0.15 -2.48 6.15 -19.47 -0.12 -2.60 16 20 C -0.07 -1.38 6.13 -19.60 -0.12 -1.50 16 21 C -0.16 -3.97 9.98 22.40 0.22 -3.75 16 22 C -0.09 -1.12 6.77 30.52 0.21 -0.92 16 23 C -0.12 -1.06 7.07 31.50 0.22 -0.84 16 24 C -0.08 -0.80 6.79 30.62 0.21 -0.59 16 25 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.42 10.94 8.47 -92.71 -0.79 10.15 16 31 H 0.12 2.11 7.66 -2.38 -0.02 2.09 16 32 H 0.12 2.11 7.66 -2.39 -0.02 2.09 16 33 H 0.15 2.11 6.31 -2.91 -0.02 2.09 16 34 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.03 346.61 3.13 -69.90 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.25 Total: 13.96 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 3.59 Total: -14.33 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.29 Total: -79.26 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.45 Total: -35.75 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.03 3.13 -69.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701268517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.803 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds