Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99744 * 3 2 1 5 5 H 1.48503 * 109.47385 * 30.00073 * 3 2 1 6 6 H 1.48502 * 109.46666 * 149.99938 * 3 2 1 7 7 C 1.37872 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47542 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47706 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.47523 * 179.97438 * 11 10 9 13 13 C 1.34231 * 116.99691 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00447 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99472 * 180.02562 * 13 12 11 16 16 N 1.46902 * 109.46833 * 185.77986 * 15 13 12 17 17 C 1.47907 * 110.99848 * 75.73483 * 16 15 13 18 18 C 1.54607 * 102.62825 * 94.65807 * 17 16 15 19 19 C 1.51573 * 102.81532 * 25.61036 * 18 17 16 20 20 C 1.37913 * 131.57092 * 163.77457 * 19 18 17 21 21 C 1.38301 * 120.08203 * 180.32006 * 20 19 18 22 22 C 1.38306 * 119.88640 * 359.97438 * 21 20 19 23 23 C 1.37917 * 120.25947 * 359.87467 * 22 21 20 24 24 C 1.38967 * 107.94666 * 343.80297 * 19 18 17 25 25 H 0.97008 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47253 * 59.99428 * 9 7 2 27 27 H 1.09001 * 109.47041 * 300.00008 * 9 7 2 28 28 H 1.08998 * 109.47510 * 59.99639 * 10 9 7 29 29 H 1.09007 * 109.47262 * 299.99869 * 10 9 7 30 30 H 1.09007 * 109.47113 * 59.99240 * 11 10 9 31 31 H 1.09001 * 109.47016 * 299.99921 * 11 10 9 32 32 H 1.08993 * 109.47273 * 65.78160 * 15 13 12 33 33 H 1.08996 * 109.47153 * 305.77820 * 15 13 12 34 34 H 1.09004 * 110.77717 * 212.94483 * 17 16 15 35 35 H 1.08997 * 110.77823 * 336.18729 * 17 16 15 36 36 H 1.09000 * 110.74300 * 143.93621 * 18 17 16 37 37 H 1.08993 * 110.74498 * 267.27396 * 18 17 16 38 38 H 1.08007 * 119.96099 * 0.28002 * 20 19 18 39 39 H 1.08009 * 120.06183 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.87380 * 179.89399 * 22 21 20 41 41 H 1.07996 * 119.89935 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 8 2.4239 -6.0907 -0.0024 13 6 1.9108 -7.3310 -0.0034 14 8 0.7130 -7.4894 -0.0035 15 6 2.8289 -8.5262 -0.0033 16 7 2.0345 -9.7538 -0.1440 17 6 1.5709 -9.9283 -1.5377 18 6 2.6588 -10.8446 -2.1435 19 6 3.1982 -11.5742 -0.9294 20 6 3.9625 -12.7163 -0.8128 21 6 4.3222 -13.1851 0.4377 22 6 3.9145 -12.5062 1.5716 23 6 3.1527 -11.3619 1.4604 24 6 2.7881 -10.8818 0.2035 25 1 -0.4851 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8539 -5.0446 -0.8922 31 1 0.8533 -5.0450 0.8877 32 1 3.3837 -8.5580 0.9343 33 1 3.5273 -8.4479 -0.8364 34 1 0.5964 -10.4161 -1.5628 35 1 1.5355 -8.9702 -2.0562 36 1 2.2209 -11.5469 -2.8528 37 1 3.4417 -10.2529 -2.6178 38 1 4.2800 -13.2457 -1.6991 39 1 4.9203 -14.0798 0.5286 40 1 4.1940 -12.8734 2.5480 41 1 2.8380 -10.8362 2.3497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741333131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = -54.273259 kcal Electronic energy + Delta-G solvation = -21690.075039 eV Core-core repulsion = 18341.877092 eV Total energy + Delta-G solvation = -3348.197947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29852 -39.95787 -37.23860 -36.20342 -33.99586 -32.82007 -31.73090 -30.51070 -29.25156 -27.78699 -26.53431 -23.47693 -23.27570 -21.75453 -21.55963 -20.52411 -20.20568 -17.66319 -17.04243 -16.64575 -16.54409 -16.10778 -15.92621 -15.61472 -15.13819 -14.49495 -14.40855 -13.99783 -13.92678 -13.34700 -13.20124 -12.85646 -12.68085 -12.48711 -12.18908 -11.95493 -11.87407 -11.82767 -11.54649 -11.20511 -10.97299 -10.67273 -10.64525 -10.42842 -10.37965 -9.82322 -9.72788 -9.47767 -9.16851 -9.13844 -8.39406 -8.24218 -6.04061 -4.07203 0.94001 1.05313 2.33924 2.63160 3.30533 3.36247 3.37077 3.40299 3.45662 4.22667 4.38616 4.42756 4.60927 4.65441 4.76161 4.79416 4.91742 5.00916 5.09502 5.12796 5.26056 5.31842 5.37964 5.49531 5.57342 5.59013 5.62801 5.76574 6.00025 6.00780 6.08155 6.18274 6.37059 6.43568 6.53127 6.53851 6.84529 6.90438 6.97870 7.59578 7.70504 7.93877 7.96941 8.35281 8.99058 9.57102 11.07343 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.002302 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.237965 B =12159.473579 C =12324.771968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.361 6.361 13 C 0.454 3.546 14 O -0.491 6.491 15 C 0.065 3.935 16 N -0.478 5.478 17 C 0.055 3.945 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.104 4.104 23 C -0.108 4.108 24 C 0.090 3.910 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -27.227 -1.477 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.278 6.278 13 C 0.294 3.706 14 O -0.377 6.377 15 C -0.061 4.061 16 N -0.196 5.196 17 C -0.071 4.071 18 C -0.152 4.152 19 C -0.138 4.138 20 C -0.109 4.109 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.781 -26.964 -1.140 28.087 hybrid contribution 0.784 0.907 -0.462 1.285 sum 8.565 -26.056 -1.602 27.475 Atomic orbital electron populations 1.69968 1.06084 1.26767 1.50521 1.25036 0.94890 0.99384 0.95209 0.86541 0.79802 0.83218 0.78126 1.20618 1.21186 1.19813 1.21166 0.93114 0.90673 1.51008 0.92432 1.19054 0.93844 0.90747 0.97696 1.21764 0.99930 0.90993 1.01949 1.23502 0.91160 0.83455 1.02172 1.86478 1.42832 1.15056 1.83385 1.23281 0.88701 0.84838 0.73732 1.90674 1.16538 1.86593 1.43903 1.21656 0.93270 0.85761 1.05430 1.59610 1.35509 0.99821 1.24630 1.23196 0.98643 1.00207 0.85088 1.21759 0.98771 0.98494 0.96146 1.21020 0.99498 0.97907 0.95385 1.20406 0.97595 0.95050 0.97803 1.21084 1.01201 1.00446 0.92203 1.20955 0.97599 0.94847 0.98896 1.20577 0.99623 0.97100 0.95520 1.19469 0.94431 0.92612 0.94018 0.92884 0.96246 0.96209 0.92131 0.92180 0.91555 0.91459 0.86441 0.89740 0.88629 0.89585 0.89230 0.89817 0.86105 0.85705 0.85448 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.26 5.53 -26.74 -0.15 -2.40 16 11 C 0.07 1.30 5.47 37.16 0.20 1.50 16 12 O -0.36 -5.98 10.22 -39.26 -0.40 -6.38 16 13 C 0.45 6.87 7.41 36.01 0.27 7.13 16 14 O -0.49 -8.86 15.72 -18.75 -0.29 -9.16 16 15 C 0.07 0.73 5.34 -4.97 -0.03 0.71 16 16 N -0.48 -5.57 4.59 -170.38 -0.78 -6.36 16 17 C 0.06 0.56 6.36 -2.42 -0.02 0.54 16 18 C -0.11 -0.90 6.93 -26.61 -0.18 -1.09 16 19 C -0.14 -1.25 6.23 -104.04 -0.65 -1.90 16 20 C -0.09 -0.71 10.03 -39.68 -0.40 -1.10 16 21 C -0.13 -0.94 10.06 -39.53 -0.40 -1.34 16 22 C -0.10 -0.79 10.02 -39.67 -0.40 -1.19 16 23 C -0.11 -1.01 10.05 -39.27 -0.39 -1.40 16 24 C 0.09 0.95 5.50 -83.41 -0.46 0.49 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.12 1.15 7.96 -51.93 -0.41 0.73 16 33 H 0.08 0.80 7.95 -51.93 -0.41 0.38 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.89 7.30 -51.93 -0.38 0.51 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -32.53 347.89 -9.91 -42.44 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.24 Total: -3.12 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.15 Total: -13.08 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.70 Total: -15.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.53 -9.91 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741333131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.832 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds