Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99744 * 3 2 1 5 5 H 1.48503 * 109.47385 * 30.00073 * 3 2 1 6 6 H 1.48502 * 109.46666 * 149.99938 * 3 2 1 7 7 C 1.37872 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47542 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47706 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.47523 * 179.97438 * 11 10 9 13 13 C 1.34231 * 116.99691 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00447 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99472 * 180.02562 * 13 12 11 16 16 N 1.46902 * 109.46833 * 185.77986 * 15 13 12 17 17 C 1.47907 * 110.99848 * 75.73483 * 16 15 13 18 18 C 1.54607 * 102.62825 * 94.65807 * 17 16 15 19 19 C 1.51573 * 102.81532 * 25.61036 * 18 17 16 20 20 C 1.37913 * 131.57092 * 163.77457 * 19 18 17 21 21 C 1.38301 * 120.08203 * 180.32006 * 20 19 18 22 22 C 1.38306 * 119.88640 * 359.97438 * 21 20 19 23 23 C 1.37917 * 120.25947 * 359.87467 * 22 21 20 24 24 C 1.38967 * 107.94666 * 343.80297 * 19 18 17 25 25 H 0.97008 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47253 * 59.99428 * 9 7 2 27 27 H 1.09001 * 109.47041 * 300.00008 * 9 7 2 28 28 H 1.08998 * 109.47510 * 59.99639 * 10 9 7 29 29 H 1.09007 * 109.47262 * 299.99869 * 10 9 7 30 30 H 1.09007 * 109.47113 * 59.99240 * 11 10 9 31 31 H 1.09001 * 109.47016 * 299.99921 * 11 10 9 32 32 H 1.08993 * 109.47273 * 65.78160 * 15 13 12 33 33 H 1.08996 * 109.47153 * 305.77820 * 15 13 12 34 34 H 1.09004 * 110.77717 * 212.94483 * 17 16 15 35 35 H 1.08997 * 110.77823 * 336.18729 * 17 16 15 36 36 H 1.09000 * 110.74300 * 143.93621 * 18 17 16 37 37 H 1.08993 * 110.74498 * 267.27396 * 18 17 16 38 38 H 1.08007 * 119.96099 * 0.28002 * 20 19 18 39 39 H 1.08009 * 120.06183 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.87380 * 179.89399 * 22 21 20 41 41 H 1.07996 * 119.89935 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 8 2.4239 -6.0907 -0.0024 13 6 1.9108 -7.3310 -0.0034 14 8 0.7130 -7.4894 -0.0035 15 6 2.8289 -8.5262 -0.0033 16 7 2.0345 -9.7538 -0.1440 17 6 1.5709 -9.9283 -1.5377 18 6 2.6588 -10.8446 -2.1435 19 6 3.1982 -11.5742 -0.9294 20 6 3.9625 -12.7163 -0.8128 21 6 4.3222 -13.1851 0.4377 22 6 3.9145 -12.5062 1.5716 23 6 3.1527 -11.3619 1.4604 24 6 2.7881 -10.8818 0.2035 25 1 -0.4851 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8539 -5.0446 -0.8922 31 1 0.8533 -5.0450 0.8877 32 1 3.3837 -8.5580 0.9343 33 1 3.5273 -8.4479 -0.8364 34 1 0.5964 -10.4161 -1.5628 35 1 1.5355 -8.9702 -2.0562 36 1 2.2209 -11.5469 -2.8528 37 1 3.4417 -10.2529 -2.6178 38 1 4.2800 -13.2457 -1.6991 39 1 4.9203 -14.0798 0.5286 40 1 4.1940 -12.8734 2.5480 41 1 2.8380 -10.8362 2.3497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741333131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = -71.853993 kcal Electronic energy + Delta-G solvation = -21690.837397 eV Core-core repulsion = 18341.877092 eV Total energy + Delta-G solvation = -3348.960305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12893 -41.12047 -38.15187 -37.37262 -35.94310 -33.78091 -33.43889 -31.27861 -29.90940 -29.23705 -27.86345 -25.18529 -24.06163 -22.72811 -22.17864 -22.17569 -21.40356 -18.90607 -18.46655 -18.03986 -17.60617 -17.22554 -17.02297 -16.49953 -16.24365 -15.99533 -15.69980 -14.96119 -14.67871 -14.54146 -14.13582 -14.06284 -13.81728 -13.74296 -13.55902 -13.33051 -13.06620 -12.81494 -12.52435 -12.47221 -12.39264 -12.23014 -12.07337 -11.83386 -11.79524 -11.45487 -11.42256 -11.24926 -10.58063 -10.52443 -9.73668 -8.94317 -8.22380 -6.34093 0.30849 0.45024 1.11666 1.40745 1.42840 1.47447 1.54610 2.40677 2.59166 2.80049 3.11446 3.51794 3.64393 3.73405 3.89364 3.97943 4.04419 4.05119 4.10956 4.18495 4.28178 4.39653 4.49702 4.52307 4.66434 4.69142 4.78440 4.83843 4.90311 4.96228 5.06693 5.14029 5.34959 5.39843 5.48792 5.50891 5.60761 5.62529 5.73949 5.79113 5.79335 6.18221 6.23659 6.69921 6.82028 7.35493 8.89826 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.002302 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.237965 B =12159.473579 C =12324.771968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.080 3.920 12 O -0.358 6.358 13 C 0.455 3.545 14 O -0.523 6.523 15 C 0.075 3.925 16 N -0.499 5.499 17 C 0.051 3.949 18 C -0.104 4.104 19 C -0.145 4.145 20 C -0.095 4.095 21 C -0.128 4.128 22 C -0.107 4.107 23 C -0.123 4.123 24 C 0.065 3.935 25 H 0.264 0.736 26 H -0.003 1.003 27 H -0.004 1.004 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -28.493 -1.705 30.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.006 3.994 12 O -0.275 6.275 13 C 0.298 3.702 14 O -0.412 6.412 15 C -0.051 4.051 16 N -0.217 5.217 17 C -0.076 4.076 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.030 4.030 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.241 -28.258 -1.370 30.088 hybrid contribution 0.005 1.182 -0.364 1.236 sum 10.245 -27.077 -1.734 29.002 Atomic orbital electron populations 1.70105 1.07903 1.27939 1.51456 1.26031 0.95810 1.03595 0.94612 0.85372 0.78628 0.78047 0.78546 1.19676 1.20854 1.18521 1.21617 0.93760 0.91823 1.50844 0.91611 1.18939 0.94283 0.92542 0.95424 1.21455 0.98710 0.90300 1.02619 1.23116 0.90920 0.83596 1.01736 1.86466 1.42060 1.15337 1.83619 1.24136 0.88954 0.84925 0.72169 1.90663 1.18232 1.86770 1.45495 1.21719 0.92394 0.83935 1.07100 1.59574 1.36363 1.00293 1.25509 1.23192 0.99185 1.00314 0.84884 1.21711 0.98209 0.98297 0.95988 1.21218 0.99863 0.98429 0.95263 1.20726 0.97021 0.94603 0.99022 1.21463 1.00561 1.00912 0.91728 1.21260 0.96819 0.94129 1.00300 1.20766 1.00318 0.97982 0.95217 1.19604 0.95698 0.92721 0.94978 0.92681 0.98499 0.98589 0.91462 0.91327 0.91920 0.92136 0.84858 0.87552 0.89438 0.90329 0.87737 0.88813 0.84055 0.83090 0.83291 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.88 5.53 30.59 0.17 -3.71 16 11 C 0.08 3.00 5.47 71.98 0.39 3.39 16 12 O -0.36 -11.69 10.22 -51.42 -0.53 -12.22 16 13 C 0.46 13.72 7.41 71.24 0.53 14.25 16 14 O -0.52 -19.30 15.72 21.96 0.35 -18.96 16 15 C 0.07 1.61 5.34 85.56 0.46 2.07 16 16 N -0.50 -11.46 4.59 -692.95 -3.18 -14.64 16 17 C 0.05 1.01 6.36 86.66 0.55 1.57 16 18 C -0.10 -1.50 6.93 30.67 0.21 -1.29 16 19 C -0.15 -2.43 6.23 -19.49 -0.12 -2.55 16 20 C -0.10 -1.25 10.03 22.21 0.22 -1.03 16 21 C -0.13 -1.47 10.06 22.30 0.22 -1.25 16 22 C -0.11 -1.39 10.02 22.21 0.22 -1.17 16 23 C -0.12 -2.16 10.05 22.47 0.23 -1.93 16 24 C 0.07 1.30 5.50 38.28 0.21 1.52 16 25 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 26 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 31 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 32 H 0.13 2.43 7.96 -2.39 -0.02 2.41 16 33 H 0.11 1.82 7.95 -2.39 -0.02 1.80 16 34 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.08 1.63 7.30 -2.39 -0.02 1.62 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -70.44 347.89 4.09 -66.35 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.00 Total: 9.07 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.14 Total: -18.88 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -2.90 Total: -71.46 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.18 Total: -31.18 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.44 4.09 -66.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741333131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.501 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds