Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 17 17 C 1.31823 * 122.55635 * 265.02716 * 16 2 1 18 18 S 1.75304 * 111.40484 * 180.02562 * 17 16 2 19 19 C 1.75906 * 92.19044 * 359.97438 * 18 17 16 20 20 C 1.39852 * 130.56175 * 180.02562 * 19 18 17 21 21 C 1.37475 * 120.17308 * 179.14481 * 20 19 18 22 22 C 1.38846 * 120.19051 * 0.76980 * 21 20 19 23 23 C 1.36095 * 120.58905 * 359.51939 * 22 21 20 24 24 C 1.39741 * 109.68196 * 359.73203 * 19 18 17 25 25 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 31 31 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 32 32 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 33 33 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 35 35 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 36 36 H 1.07997 * 124.29872 * 359.97438 * 17 16 2 37 37 H 1.08004 * 119.91450 * 359.97326 * 20 19 18 38 38 H 1.07998 * 119.90437 * 180.27196 * 21 20 19 39 39 H 1.07994 * 119.71092 * 179.49642 * 22 21 20 40 40 H 1.08003 * 119.77472 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6610 0.4201 4.7694 8 6 3.1653 -0.3244 5.9787 9 1 3.4143 -1.3726 5.9025 10 6 3.3099 0.3327 7.1821 11 7 3.0072 1.6092 7.2748 12 14 3.9343 -0.5903 8.6813 13 1 5.4155 -0.4991 8.7372 14 1 3.3548 0.0104 9.9095 15 1 3.5294 -2.0160 8.5890 16 6 2.0323 -0.7105 -1.2304 17 6 2.3596 -1.9874 -1.2282 18 16 2.9059 -2.5105 -2.8097 19 6 2.6721 -0.9075 -3.4952 20 6 2.8875 -0.4331 -4.7931 21 6 2.6127 0.8774 -5.1043 22 6 2.1349 1.7415 -4.1281 23 6 1.9238 1.3020 -2.8574 24 6 2.1867 -0.0413 -2.5119 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.4494 -1.4979 1.4101 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6163 2.5526 31 1 1.9183 -1.3565 3.8030 32 1 3.5903 -0.9272 3.3692 33 1 3.3380 1.2432 4.5406 34 1 1.6659 0.8145 4.9750 35 1 3.1085 2.0714 8.1216 36 1 2.2996 -2.6296 -0.3620 37 1 3.2581 -1.1015 -5.5562 38 1 2.7766 1.2380 -6.1090 39 1 1.9294 2.7715 -4.3791 40 1 1.5522 1.9856 -2.1083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754738197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = 24.158833 kcal Electronic energy + Delta-G solvation = -19457.743870 eV Core-core repulsion = 16555.699864 eV Total energy + Delta-G solvation = -2902.044005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91502 -37.65877 -35.11755 -33.46467 -31.78760 -31.11336 -29.34963 -29.07394 -25.91784 -24.42577 -23.05037 -22.59600 -21.85428 -20.30699 -19.11260 -18.25856 -16.39479 -15.90787 -15.69838 -15.35877 -15.17278 -14.61136 -14.40384 -14.34114 -13.96444 -13.62082 -13.28093 -12.99194 -12.62438 -12.30021 -12.17637 -12.01215 -11.84195 -11.53497 -11.35988 -11.17018 -11.00679 -10.83972 -10.71310 -10.57532 -10.47533 -9.74888 -9.69291 -9.33491 -9.05319 -8.65911 -8.33509 -8.23612 -7.77948 -5.98750 -4.00739 0.61794 1.04053 1.44395 1.91459 2.18518 3.33078 3.39061 3.42595 3.52382 4.18358 4.47465 4.48510 4.68283 4.71341 4.94183 5.07196 5.13731 5.16938 5.22657 5.37146 5.41241 5.57529 5.63048 5.71729 5.78398 5.84530 5.87318 6.00259 6.05632 6.14144 6.25107 6.31483 6.40669 6.64319 6.71690 6.77494 7.13698 7.30437 7.56988 7.69421 7.84337 8.01732 8.44971 9.06488 9.63245 11.12744 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002699 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.190722 B =10370.588487 C =10824.624122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 H 0.088 0.912 4 N -0.684 5.684 5 C 0.060 3.940 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.074 4.074 17 C -0.166 4.166 18 S 0.066 5.934 19 C -0.139 4.139 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.079 4.079 24 C -0.063 4.063 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.338 0.662 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.171 0.829 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -3.013 -25.667 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 H 0.106 0.894 4 N -0.314 5.314 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.085 4.085 17 C -0.300 4.300 18 S 0.331 5.669 19 C -0.254 4.254 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.099 4.099 24 C -0.071 4.071 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.189 0.811 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.984 -4.249 -26.192 26.701 hybrid contribution -1.022 0.973 1.697 2.207 sum -4.006 -3.277 -24.494 25.035 Atomic orbital electron populations 1.22459 0.96138 1.02460 1.02454 1.20103 0.92436 0.97293 0.87510 0.89432 1.60627 1.56669 1.10192 1.03951 1.22162 0.99239 0.95388 0.90017 1.21619 1.00099 0.98933 0.93823 1.19059 0.97017 0.94328 0.91128 1.21256 1.43502 0.96384 0.94542 0.92689 1.25032 0.95638 0.94892 0.98977 1.69966 1.48934 1.08993 1.25744 0.86597 0.79033 0.79992 0.82403 1.20648 1.21255 1.19893 1.19648 1.01900 0.93378 0.93603 1.24799 1.05851 0.99173 1.00135 1.84084 1.71175 1.08398 1.03216 1.22686 1.06742 0.97922 0.98068 1.20461 1.00673 0.96092 0.93490 1.21021 0.99338 0.93035 0.99545 1.20693 1.00318 0.99991 0.93082 1.20747 0.98842 0.93451 0.96810 1.19159 1.01528 0.94437 0.92011 0.91797 0.92082 0.92282 0.84372 0.91405 0.95492 0.93659 0.92553 0.96589 0.96814 0.93040 0.81138 0.85749 0.85434 0.85561 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.14 37.15 0.34 -1.55 16 2 C 0.14 1.72 2.78 -68.87 -0.19 1.53 16 3 H 0.09 1.11 7.52 -51.93 -0.39 0.72 16 4 N -0.68 -9.66 5.40 -107.96 -0.58 -10.24 16 5 C 0.06 1.01 5.48 -3.83 -0.02 0.99 16 6 C -0.11 -2.19 5.41 -26.74 -0.14 -2.34 16 7 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 8 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 9 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 12 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.07 -0.91 5.14 -103.68 -0.53 -1.44 16 17 C -0.17 -1.99 10.25 28.84 0.30 -1.69 16 18 S 0.07 0.73 23.23 -107.50 -2.50 -1.77 16 19 C -0.14 -1.61 6.48 -38.42 -0.25 -1.86 16 20 C -0.08 -0.81 10.07 -39.26 -0.40 -1.21 16 21 C -0.11 -0.90 10.03 -39.63 -0.40 -1.30 16 22 C -0.12 -1.05 9.95 -40.13 -0.40 -1.45 16 23 C -0.08 -0.81 9.77 -39.24 -0.38 -1.20 16 24 C -0.06 -0.75 6.01 -105.37 -0.63 -1.39 16 25 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.34 4.41 8.18 -39.29 -0.32 4.09 16 29 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 30 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.17 1.91 7.41 -52.49 -0.39 1.52 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.13 7.83 -52.48 -0.41 0.72 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -30.99 345.78 -11.47 -42.45 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.05 Total: 0.07 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.26 Total: -26.12 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.15 Total: -36.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -11.47 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754738197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.612 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds