Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 17 17 C 1.31823 * 122.55635 * 265.02716 * 16 2 1 18 18 S 1.75304 * 111.40484 * 180.02562 * 17 16 2 19 19 C 1.75906 * 92.19044 * 359.97438 * 18 17 16 20 20 C 1.39852 * 130.56175 * 180.02562 * 19 18 17 21 21 C 1.37475 * 120.17308 * 179.14481 * 20 19 18 22 22 C 1.38846 * 120.19051 * 0.76980 * 21 20 19 23 23 C 1.36095 * 120.58905 * 359.51939 * 22 21 20 24 24 C 1.39741 * 109.68196 * 359.73203 * 19 18 17 25 25 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 31 31 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 32 32 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 33 33 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 35 35 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 36 36 H 1.07997 * 124.29872 * 359.97438 * 17 16 2 37 37 H 1.08004 * 119.91450 * 359.97326 * 20 19 18 38 38 H 1.07998 * 119.90437 * 180.27196 * 21 20 19 39 39 H 1.07994 * 119.71092 * 179.49642 * 22 21 20 40 40 H 1.08003 * 119.77472 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6610 0.4201 4.7694 8 6 3.1653 -0.3244 5.9787 9 1 3.4143 -1.3726 5.9025 10 6 3.3099 0.3327 7.1821 11 7 3.0072 1.6092 7.2748 12 14 3.9343 -0.5903 8.6813 13 1 5.4155 -0.4991 8.7372 14 1 3.3548 0.0104 9.9095 15 1 3.5294 -2.0160 8.5890 16 6 2.0323 -0.7105 -1.2304 17 6 2.3596 -1.9874 -1.2282 18 16 2.9059 -2.5105 -2.8097 19 6 2.6721 -0.9075 -3.4952 20 6 2.8875 -0.4331 -4.7931 21 6 2.6127 0.8774 -5.1043 22 6 2.1349 1.7415 -4.1281 23 6 1.9238 1.3020 -2.8574 24 6 2.1867 -0.0413 -2.5119 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.4494 -1.4979 1.4101 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6163 2.5526 31 1 1.9183 -1.3565 3.8030 32 1 3.5903 -0.9272 3.3692 33 1 3.3380 1.2432 4.5406 34 1 1.6659 0.8145 4.9750 35 1 3.1085 2.0714 8.1216 36 1 2.2996 -2.6296 -0.3620 37 1 3.2581 -1.1015 -5.5562 38 1 2.7766 1.2380 -6.1090 39 1 1.9294 2.7715 -4.3791 40 1 1.5522 1.9856 -2.1083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754738197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = 7.980184 kcal Electronic energy + Delta-G solvation = -19458.445429 eV Core-core repulsion = 16555.699864 eV Total energy + Delta-G solvation = -2902.745564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71057 -38.68838 -36.45018 -35.14459 -33.39073 -31.93245 -30.58795 -30.01081 -27.67293 -25.38572 -24.42189 -23.54758 -22.86576 -22.02025 -20.06492 -19.07565 -18.46919 -16.93567 -16.64915 -16.48679 -16.37398 -16.06696 -15.57263 -15.39547 -14.86350 -14.62704 -14.41920 -14.32646 -13.90202 -13.64788 -13.46354 -13.23238 -12.97564 -12.77086 -12.67796 -12.46905 -12.44533 -12.24056 -11.98327 -11.84371 -11.54495 -11.53992 -11.36774 -11.08488 -10.55479 -10.51003 -9.44994 -9.40383 -8.59714 -8.20502 -6.31324 -0.17361 0.30848 0.62875 1.05973 1.34313 1.39685 1.41096 1.52192 2.40640 2.78282 3.09867 3.12688 3.71221 3.80987 4.05059 4.14925 4.16267 4.21600 4.29253 4.42885 4.43497 4.49163 4.62965 4.71905 4.73357 4.86343 4.90484 4.97607 5.07460 5.09035 5.16811 5.22526 5.25858 5.39508 5.51596 5.52750 5.59993 5.75709 5.86186 5.96628 6.05526 6.27056 6.44918 6.85774 7.37889 8.91459 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002699 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.190722 B =10370.588487 C =10824.624122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 H 0.082 0.918 4 N -0.684 5.684 5 C 0.075 3.925 6 C -0.092 4.092 7 C 0.026 3.974 8 C -0.543 4.543 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.263 1.263 16 C -0.081 4.081 17 C -0.180 4.180 18 S 0.072 5.928 19 C -0.158 4.158 20 C -0.096 4.096 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.094 4.094 24 C -0.086 4.086 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.346 0.654 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.050 0.950 33 H -0.010 1.010 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.173 0.827 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 -3.431 -26.964 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.100 0.900 4 N -0.315 5.315 5 C -0.054 4.054 6 C -0.130 4.130 7 C -0.012 4.012 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.187 1.187 16 C -0.093 4.093 17 C -0.314 4.314 18 S 0.337 5.663 19 C -0.273 4.273 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.095 4.095 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.008 0.992 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.191 0.809 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.171 0.829 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.980 -4.682 -27.510 28.064 hybrid contribution -1.024 1.165 1.996 2.528 sum -4.003 -3.516 -25.514 26.065 Atomic orbital electron populations 1.22375 0.94816 1.02838 1.02725 1.20067 0.93439 0.96758 0.86656 0.90012 1.60508 1.57569 1.10011 1.03450 1.21831 0.98922 0.95016 0.89599 1.21361 1.00198 0.98079 0.93334 1.18961 0.94861 0.94468 0.92908 1.21706 1.43735 0.96849 0.95796 0.92305 1.25989 0.95687 0.95794 1.02449 1.70095 1.49871 1.10670 1.26790 0.85452 0.78583 0.78941 0.78112 1.19825 1.20627 1.18741 1.19695 1.02259 0.93601 0.93790 1.24913 1.06267 0.99328 1.00842 1.83938 1.71157 1.08578 1.02603 1.22954 1.07447 0.97932 0.99000 1.20810 1.00701 0.97154 0.93139 1.21450 0.97626 0.92350 1.00913 1.21081 0.99035 1.01381 0.92404 1.20978 0.99420 0.93024 0.97973 1.19331 1.02780 0.95425 0.91959 0.92210 0.91039 0.91847 0.83509 0.92220 0.95189 0.92948 0.93139 0.99152 0.98909 0.92762 0.80943 0.83977 0.82274 0.82907 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.14 71.98 0.66 -2.83 16 2 C 0.14 3.48 2.78 44.16 0.12 3.60 16 3 H 0.08 2.07 7.52 -2.39 -0.02 2.05 16 4 N -0.68 -19.09 5.40 -495.47 -2.68 -21.76 16 5 C 0.08 2.55 5.48 86.30 0.47 3.02 16 6 C -0.09 -3.80 5.41 30.59 0.17 -3.64 16 7 C 0.03 1.37 4.97 29.84 0.15 1.52 16 8 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 10 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 11 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 12 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.08 -1.99 5.14 -18.81 -0.10 -2.09 16 17 C -0.18 -4.28 10.25 67.04 0.69 -3.59 16 18 S 0.07 1.56 23.23 -56.49 -1.31 0.25 16 19 C -0.16 -3.52 6.48 23.02 0.15 -3.37 16 20 C -0.10 -1.65 10.07 22.48 0.23 -1.43 16 21 C -0.10 -1.42 10.03 22.24 0.22 -1.20 16 22 C -0.12 -1.78 9.95 21.92 0.22 -1.56 16 23 C -0.09 -1.83 9.77 22.49 0.22 -1.61 16 24 C -0.09 -2.03 6.01 -20.35 -0.12 -2.15 16 25 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.35 8.78 8.18 -89.69 -0.73 8.05 16 29 H 0.06 2.12 8.06 -2.39 -0.02 2.10 16 30 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.17 3.86 7.41 -2.91 -0.02 3.83 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.13 2.25 7.83 -2.91 -0.02 2.23 16 Total: -1.00 -66.77 345.78 2.38 -64.39 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.29 Total: 13.67 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 3.77 Total: -46.17 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.39 Total: -78.97 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.31 Total: 0.25 kcal Total: -66.77 2.38 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754738197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.367 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds