Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47086 * 59.99480 * 12 10 8 14 14 H 1.48494 * 109.47288 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46879 * 299.99424 * 12 10 8 16 16 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 17 17 C 1.31824 * 122.55674 * 100.02454 * 16 2 1 18 18 S 1.75295 * 111.40505 * 180.02562 * 17 16 2 19 19 C 1.75901 * 92.19337 * 359.97438 * 18 17 16 20 20 C 1.39857 * 130.56342 * 180.02562 * 19 18 17 21 21 C 1.37473 * 120.17097 * 179.14486 * 20 19 18 22 22 C 1.38852 * 120.19376 * 0.77512 * 21 20 19 23 23 C 1.36100 * 120.58568 * 359.51425 * 22 21 20 24 24 C 1.39746 * 109.68043 * 359.73066 * 19 18 17 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 27 27 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.00891 * 110.99988 * 208.95015 * 4 2 1 29 29 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 30 30 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 31 31 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 32 32 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 33 33 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 34 34 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 35 35 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 36 36 H 1.08005 * 124.29513 * 0.02562 * 17 16 2 37 37 H 1.07995 * 119.91387 * 359.97379 * 20 19 18 38 38 H 1.08000 * 119.90101 * 180.26388 * 21 20 19 39 39 H 1.07999 * 119.70576 * 179.49426 * 22 21 20 40 40 H 1.07998 * 119.76910 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6608 0.4206 -4.7694 8 6 3.1663 -0.3236 -5.9786 9 1 3.4160 -1.3715 -5.9023 10 6 3.3100 0.3334 -7.1822 11 7 3.0055 1.6094 -7.2752 12 14 3.9358 -0.5891 -8.6811 13 1 3.0139 -1.7109 -8.9924 14 1 3.9987 0.3359 -9.8410 15 1 5.2919 -1.1259 -8.4013 16 6 2.0324 -0.7105 1.2303 17 6 2.4512 -1.9602 1.2065 18 16 2.9682 -2.4921 2.7948 19 6 2.5922 -0.9315 3.5140 20 6 2.7205 -0.4832 4.8326 21 6 2.3726 0.8056 5.1611 22 6 1.8769 1.6644 4.1891 23 6 1.7385 1.2467 2.9013 24 6 2.0982 -0.0678 2.5328 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9173 -1.1203 -1.0290 29 1 2.7588 1.0465 -2.1182 30 1 1.0870 0.6166 -2.5526 31 1 3.5916 -0.9259 -3.3684 32 1 1.9201 -1.3564 -3.8032 33 1 1.6653 0.8135 -4.9752 34 1 3.3366 1.2446 -4.5408 35 1 3.1062 2.0717 -8.1220 36 1 2.4730 -2.5780 0.3208 37 1 3.1064 -1.1470 5.5920 38 1 2.4775 1.1485 6.1798 39 1 1.5984 2.6728 4.4576 40 1 1.3511 1.9256 2.1560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754738199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = 25.184491 kcal Electronic energy + Delta-G solvation = -19463.960570 eV Core-core repulsion = 16561.961041 eV Total energy + Delta-G solvation = -2901.999530 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00281 -37.65742 -35.09779 -33.40669 -31.79292 -31.13532 -29.38369 -29.29317 -26.01335 -24.33349 -23.12628 -22.64157 -21.61473 -20.27540 -19.09809 -18.31436 -16.43082 -16.09795 -15.88027 -15.48682 -15.11126 -14.58702 -14.49811 -14.26095 -14.01351 -13.63958 -13.32369 -12.71827 -12.61968 -12.23089 -12.12965 -12.03852 -11.83329 -11.68854 -11.31309 -11.21644 -10.99384 -10.82215 -10.66989 -10.54401 -10.50114 -9.81334 -9.68106 -9.33080 -9.05749 -8.74594 -8.32945 -8.25728 -7.86505 -5.98139 -4.00264 0.52975 0.98227 1.36088 1.82162 2.06957 3.34803 3.38850 3.41616 3.46416 4.16439 4.41718 4.48084 4.61085 4.65712 4.86117 5.02762 5.15275 5.22497 5.36671 5.37578 5.37649 5.55900 5.70367 5.74062 5.77894 5.85492 5.91421 5.99164 6.07412 6.16844 6.25760 6.29332 6.36946 6.58372 6.71615 6.78007 7.14092 7.31229 7.57036 7.69657 7.84833 8.02193 8.45359 9.06717 9.63605 11.13320 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.002691 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.239387 B =10400.969310 C =10893.304263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.141 3.859 3 H 0.054 0.946 4 N -0.686 5.686 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.087 4.087 17 C -0.178 4.178 18 S 0.075 5.925 19 C -0.139 4.139 20 C -0.085 4.085 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.077 4.077 24 C -0.064 4.064 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.339 0.661 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.177 0.823 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 -2.739 26.297 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.028 3.972 3 H 0.071 0.929 4 N -0.318 5.318 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.099 4.099 17 C -0.311 4.311 18 S 0.340 5.660 19 C -0.254 4.254 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.097 4.097 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.195 0.805 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.736 -4.275 26.480 26.962 hybrid contribution 0.612 1.373 -1.226 1.939 sum -2.125 -2.902 25.255 25.510 Atomic orbital electron populations 1.21744 0.93330 1.02656 1.01340 1.20148 0.96046 0.95110 0.85878 0.92862 1.60739 1.33276 1.33942 1.03838 1.22195 1.00651 0.93671 0.90430 1.21620 0.99259 0.99492 0.94080 1.19056 0.97110 0.94203 0.91135 1.21221 1.43604 0.96364 0.94583 0.92736 1.25028 0.95641 0.94887 0.98953 1.69953 1.48871 1.09007 1.25808 0.86655 0.79429 0.79617 0.82287 1.20215 1.21311 1.20271 1.19840 1.01649 0.94205 0.94207 1.24955 1.05833 0.99304 1.01016 1.84115 1.69295 1.11630 1.00939 1.22717 1.06623 0.98279 0.97828 1.20467 1.00756 0.96330 0.93191 1.21044 0.98949 0.93108 0.99637 1.20713 1.00266 1.00095 0.92952 1.20767 0.98504 0.93732 0.96713 1.19134 1.01661 0.94762 0.91700 0.92808 0.91874 0.91867 0.84274 0.95632 0.91250 0.93691 0.92512 0.96568 0.96831 0.92979 0.80533 0.85670 0.85346 0.85468 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.40 37.16 0.35 -1.23 16 2 C 0.14 1.78 2.81 -68.86 -0.19 1.59 16 3 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 4 N -0.69 -9.90 5.79 -107.94 -0.62 -10.53 16 5 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 6 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 12 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.09 -1.06 5.07 -103.68 -0.53 -1.58 16 17 C -0.18 -2.05 9.79 28.84 0.28 -1.77 16 18 S 0.07 0.79 23.23 -107.50 -2.50 -1.71 16 19 C -0.14 -1.55 6.48 -38.41 -0.25 -1.80 16 20 C -0.08 -0.78 10.07 -39.25 -0.40 -1.18 16 21 C -0.11 -0.85 10.03 -39.63 -0.40 -1.25 16 22 C -0.12 -1.01 9.95 -40.12 -0.40 -1.41 16 23 C -0.08 -0.78 9.82 -39.24 -0.39 -1.17 16 24 C -0.06 -0.75 6.01 -105.38 -0.63 -1.38 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.34 4.68 7.15 -39.30 -0.28 4.40 16 29 H 0.03 0.44 8.06 -51.93 -0.42 0.03 16 30 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.18 1.94 7.13 -52.48 -0.37 1.56 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.13 8.05 -52.49 -0.42 0.71 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -30.84 345.17 -11.49 -42.32 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.02 Total: 0.13 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.26 Total: -25.79 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.11 Total: -37.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.84 -11.49 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754738199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.508 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds