Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47086 * 59.99480 * 12 10 8 14 14 H 1.48494 * 109.47288 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46879 * 299.99424 * 12 10 8 16 16 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 17 17 C 1.31824 * 122.55674 * 100.02454 * 16 2 1 18 18 S 1.75295 * 111.40505 * 180.02562 * 17 16 2 19 19 C 1.75901 * 92.19337 * 359.97438 * 18 17 16 20 20 C 1.39857 * 130.56342 * 180.02562 * 19 18 17 21 21 C 1.37473 * 120.17097 * 179.14486 * 20 19 18 22 22 C 1.38852 * 120.19376 * 0.77512 * 21 20 19 23 23 C 1.36100 * 120.58568 * 359.51425 * 22 21 20 24 24 C 1.39746 * 109.68043 * 359.73066 * 19 18 17 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 27 27 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.00891 * 110.99988 * 208.95015 * 4 2 1 29 29 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 30 30 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 31 31 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 32 32 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 33 33 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 34 34 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 35 35 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 36 36 H 1.08005 * 124.29513 * 0.02562 * 17 16 2 37 37 H 1.07995 * 119.91387 * 359.97379 * 20 19 18 38 38 H 1.08000 * 119.90101 * 180.26388 * 21 20 19 39 39 H 1.07999 * 119.70576 * 179.49426 * 22 21 20 40 40 H 1.07998 * 119.76910 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6608 0.4206 -4.7694 8 6 3.1663 -0.3236 -5.9786 9 1 3.4160 -1.3715 -5.9023 10 6 3.3100 0.3334 -7.1822 11 7 3.0055 1.6094 -7.2752 12 14 3.9358 -0.5891 -8.6811 13 1 3.0139 -1.7109 -8.9924 14 1 3.9987 0.3359 -9.8410 15 1 5.2919 -1.1259 -8.4013 16 6 2.0324 -0.7105 1.2303 17 6 2.4512 -1.9602 1.2065 18 16 2.9682 -2.4921 2.7948 19 6 2.5922 -0.9315 3.5140 20 6 2.7205 -0.4832 4.8326 21 6 2.3726 0.8056 5.1611 22 6 1.8769 1.6644 4.1891 23 6 1.7385 1.2467 2.9013 24 6 2.0982 -0.0678 2.5328 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9173 -1.1203 -1.0290 29 1 2.7588 1.0465 -2.1182 30 1 1.0870 0.6166 -2.5526 31 1 3.5916 -0.9259 -3.3684 32 1 1.9201 -1.3564 -3.8032 33 1 1.6653 0.8135 -4.9752 34 1 3.3366 1.2446 -4.5408 35 1 3.1062 2.0717 -8.1220 36 1 2.4730 -2.5780 0.3208 37 1 3.1064 -1.1470 5.5920 38 1 2.4775 1.1485 6.1798 39 1 1.5984 2.6728 4.4576 40 1 1.3511 1.9256 2.1560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754738199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = 9.085307 kcal Electronic energy + Delta-G solvation = -19464.658683 eV Core-core repulsion = 16561.961041 eV Total energy + Delta-G solvation = -2902.697643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78423 -38.68478 -36.46299 -35.09683 -33.35570 -31.96428 -30.67818 -30.17103 -27.78527 -25.35840 -24.43237 -23.56939 -22.67980 -21.99517 -20.05003 -19.10912 -18.46066 -17.28592 -16.77719 -16.53373 -16.28234 -16.02709 -15.53445 -15.40429 -15.19406 -14.51564 -14.39335 -14.31431 -13.74135 -13.64783 -13.40371 -13.25838 -12.95463 -12.80613 -12.69262 -12.48682 -12.44947 -12.21300 -12.04486 -11.83512 -11.58350 -11.49066 -11.37293 -11.09990 -10.56006 -10.55067 -9.51474 -9.46542 -8.65073 -8.20330 -6.31399 -0.23965 0.27820 0.57205 0.99315 1.25161 1.39678 1.42927 1.50834 2.40748 2.75555 3.05491 3.12710 3.66239 3.70992 3.99906 4.12011 4.21547 4.25446 4.27479 4.40229 4.45502 4.50046 4.62305 4.69890 4.78076 4.83439 4.93910 4.94906 5.02565 5.06809 5.18998 5.22674 5.30004 5.36827 5.46578 5.51611 5.55514 5.74767 5.85619 5.93531 6.03138 6.26493 6.38791 6.85376 7.37763 8.91465 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.002691 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.239387 B =10400.969310 C =10893.304263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.144 3.856 3 H 0.051 0.949 4 N -0.683 5.683 5 C 0.073 3.927 6 C -0.091 4.091 7 C 0.026 3.974 8 C -0.544 4.544 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.095 4.095 17 C -0.189 4.189 18 S 0.086 5.914 19 C -0.158 4.158 20 C -0.095 4.095 21 C -0.101 4.101 22 C -0.118 4.118 23 C -0.094 4.094 24 C -0.087 4.087 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.343 0.657 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.054 0.946 33 H -0.008 1.008 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.178 0.822 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -3.182 27.775 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.032 3.968 3 H 0.069 0.931 4 N -0.315 5.315 5 C -0.056 4.056 6 C -0.129 4.129 7 C -0.012 4.012 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.107 4.107 17 C -0.322 4.322 18 S 0.352 5.648 19 C -0.273 4.273 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.095 4.095 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.011 0.989 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.195 0.805 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.445 -4.732 27.979 28.482 hybrid contribution 0.510 1.567 -1.577 2.281 sum -1.935 -3.165 26.402 26.662 Atomic orbital electron populations 1.21704 0.92743 1.02399 1.01747 1.20117 0.96431 0.94865 0.85406 0.93096 1.60665 1.33612 1.33329 1.03896 1.21888 1.00126 0.93424 0.90166 1.21363 0.99697 0.98338 0.93544 1.18958 0.94877 0.94399 0.92935 1.21678 1.43850 0.96872 0.95824 0.92257 1.25993 0.95679 0.95787 1.02443 1.70087 1.49806 1.10703 1.26824 0.85501 0.79210 0.78370 0.77982 1.19166 1.20753 1.19165 1.19816 1.02210 0.94453 0.94234 1.25045 1.06042 0.99359 1.01792 1.83965 1.69133 1.11649 1.00091 1.22981 1.07272 0.98337 0.98740 1.20820 1.00750 0.97351 0.92811 1.21472 0.97222 0.92389 1.01059 1.21095 0.99062 1.01369 0.92271 1.20982 0.99145 0.93360 0.97870 1.19278 1.02946 0.95744 0.91556 0.91288 0.92545 0.92405 0.83782 0.95934 0.91522 0.93244 0.92718 0.98930 0.99158 0.92745 0.80480 0.83834 0.82181 0.82858 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.40 71.98 0.68 -2.32 16 2 C 0.14 3.62 2.81 44.17 0.12 3.74 16 3 H 0.05 1.32 7.79 -2.38 -0.02 1.30 16 4 N -0.68 -19.60 5.79 -495.42 -2.87 -22.47 16 5 C 0.07 2.53 5.48 86.31 0.47 3.00 16 6 C -0.09 -3.83 5.41 30.60 0.17 -3.66 16 7 C 0.03 1.39 4.97 29.85 0.15 1.54 16 8 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 11 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 12 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 C -0.09 -2.27 5.07 -18.81 -0.10 -2.37 16 17 C -0.19 -4.32 9.79 67.03 0.66 -3.66 16 18 S 0.09 1.76 23.23 -56.49 -1.31 0.45 16 19 C -0.16 -3.36 6.48 23.03 0.15 -3.21 16 20 C -0.09 -1.55 10.07 22.48 0.23 -1.32 16 21 C -0.10 -1.31 10.03 22.24 0.22 -1.09 16 22 C -0.12 -1.68 9.95 21.92 0.22 -1.47 16 23 C -0.09 -1.77 9.82 22.49 0.22 -1.55 16 24 C -0.09 -1.97 6.01 -20.35 -0.12 -2.10 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.34 9.40 7.15 -89.70 -0.64 8.76 16 29 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 30 H 0.07 2.35 7.44 -2.39 -0.02 2.33 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.18 3.88 7.13 -2.91 -0.02 3.86 16 37 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.13 2.22 8.05 -2.91 -0.02 2.20 16 Total: -1.00 -66.37 345.17 2.27 -64.10 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.38 Total: 13.87 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.76 Total: -45.46 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.58 Total: -79.81 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.31 Total: 0.45 kcal Total: -66.37 2.27 -64.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754738199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.184 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds