Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47341 * 154.40023 * 3 2 1 5 5 C 1.52996 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46932 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00254 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00230 * 4.74382 * 8 6 5 10 10 C 1.50702 * 109.47016 * 270.00036 * 9 8 6 11 11 H 1.08007 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99764 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47334 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47050 * 120.00421 * 14 12 10 17 17 H 1.48503 * 109.47312 * 240.00004 * 14 12 10 18 18 C 1.40032 * 120.00268 * 184.74048 * 8 6 5 19 19 C 1.38852 * 120.04251 * 67.63927 * 18 8 6 20 20 C 1.38112 * 119.95014 * 179.72617 * 19 18 8 21 21 C 1.38478 * 120.04551 * 0.55174 * 20 19 18 22 22 F 1.35103 * 119.94991 * 179.70308 * 21 20 19 23 23 C 1.38465 * 120.09013 * 359.72749 * 21 20 19 24 24 C 1.38116 * 120.04622 * 359.97438 * 23 21 20 25 25 H 4.44652 * 5.63344 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.47754 * 34.39858 * 3 2 1 27 27 H 1.09002 * 109.47126 * 274.39888 * 3 2 1 28 28 H 1.08997 * 109.47170 * 59.99818 * 4 3 2 29 29 H 1.09002 * 109.46901 * 300.00003 * 4 3 2 30 30 H 1.08997 * 109.47166 * 59.99763 * 5 4 3 31 31 H 1.09002 * 109.47069 * 299.99848 * 5 4 3 32 32 H 1.09004 * 109.46786 * 29.99480 * 9 8 6 33 33 H 1.08996 * 109.47292 * 149.99871 * 9 8 6 34 34 H 0.97001 * 120.00222 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.02241 * 0.02562 * 19 18 8 36 36 H 1.08001 * 119.97634 * 180.25442 * 20 19 18 37 37 H 1.08009 * 119.97786 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.02003 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3018 -0.6233 5 6 4.6854 1.3022 -0.6239 6 6 5.1871 2.5835 -1.2384 7 8 4.3986 3.4143 -1.6370 8 7 6.5121 2.8062 -1.3449 9 6 7.4639 1.7611 -0.9597 10 6 7.8114 1.9110 0.4990 11 1 7.3680 2.7056 1.0808 12 6 8.6954 1.0338 1.0907 13 7 9.2356 0.0667 0.3821 14 14 9.1267 1.2201 2.8986 15 1 8.3917 2.3789 3.4660 16 1 8.7440 -0.0152 3.6286 17 1 10.5879 1.4449 3.0383 18 6 6.9791 4.0364 -1.8237 19 6 6.7966 5.1895 -1.0721 20 6 7.2630 6.4010 -1.5436 21 6 7.9022 6.4679 -2.7702 22 9 8.3523 7.6550 -3.2323 23 6 8.0801 5.3201 -3.5239 24 6 7.6206 4.1056 -3.0532 25 1 -1.0502 -0.0004 0.0000 26 1 3.0098 -0.8471 -0.5806 27 1 3.0093 -0.0780 1.0247 28 1 2.7917 2.1496 -0.0427 29 1 2.7921 1.3804 -1.6479 30 1 5.0487 0.4544 -1.2047 31 1 5.0491 1.2233 0.4006 32 1 7.0156 0.7817 -1.1276 33 1 8.3686 1.8544 -1.5603 34 1 9.8578 -0.5502 0.7983 35 1 6.2945 5.1383 -0.1173 36 1 7.1248 7.2975 -0.9574 37 1 8.5785 5.3744 -4.4805 38 1 7.7592 3.2106 -3.6416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760306116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -14.618009 kcal Electronic energy + Delta-G solvation = -22037.216563 eV Core-core repulsion = 18567.277892 eV Total energy + Delta-G solvation = -3469.938672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63951 -39.97221 -38.02861 -35.44640 -34.99299 -32.71537 -32.09804 -30.87642 -29.51826 -27.60218 -26.91599 -23.40194 -23.03283 -22.51429 -21.29653 -18.89145 -18.01818 -17.42396 -16.89385 -16.64294 -15.96253 -15.88993 -15.39488 -15.30653 -14.55973 -14.34725 -13.99294 -13.95888 -13.29116 -13.16430 -13.01708 -12.73171 -12.51677 -12.13044 -12.01972 -11.90378 -11.66235 -11.21241 -11.08309 -10.87596 -10.81602 -10.64057 -10.29427 -10.12111 -9.98243 -9.90554 -9.28514 -8.82211 -8.66547 -8.58456 -7.72779 -6.28385 -4.36072 1.42353 1.53867 2.87182 2.91018 3.16096 3.18749 3.25844 3.29726 3.67642 3.90487 4.25887 4.45027 4.52930 5.03256 5.05529 5.08570 5.15523 5.27090 5.39460 5.54411 5.66175 5.70861 5.82045 5.82907 5.88924 6.09151 6.14067 6.16656 6.37286 6.41483 6.44796 6.53798 6.68196 6.75934 7.01522 7.08772 7.50748 7.66463 7.68427 7.91627 8.08057 8.66541 8.84756 9.32186 10.78594 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.005823 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.831550 B = 4807.245182 C = 7174.533243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C -0.018 4.018 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.522 3.478 7 O -0.560 6.560 8 N -0.564 5.564 9 C 0.238 3.762 10 C -0.539 4.539 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.169 3.831 19 C -0.080 4.080 20 C -0.144 4.144 21 C 0.078 3.922 22 F -0.147 7.147 23 C -0.144 4.144 24 C -0.097 4.097 25 H 0.214 0.786 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 2.862 -3.245 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.172 4.172 3 C -0.054 4.054 4 C -0.135 4.135 5 C -0.173 4.173 6 C 0.312 3.688 7 O -0.439 6.439 8 N -0.292 5.292 9 C 0.120 3.880 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.077 3.923 19 C -0.099 4.099 20 C -0.163 4.163 21 C 0.059 3.941 22 F -0.126 7.126 23 C -0.164 4.164 24 C -0.117 4.117 25 H 0.231 0.769 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.832 3.128 -3.446 8.266 hybrid contribution 0.463 0.122 1.026 1.132 sum -6.368 3.250 -2.420 7.548 Atomic orbital electron populations 1.24822 0.95913 1.01718 1.02084 1.23283 0.94683 0.99686 0.99577 1.18838 0.84365 0.99402 1.02840 1.21279 0.94047 0.96258 1.01874 1.21634 0.95437 0.96016 1.04238 1.20688 0.81402 0.88871 0.77819 1.90642 1.55313 1.48130 1.49831 1.46049 1.06871 1.13850 1.62386 1.19614 0.87534 0.84759 0.96121 1.21454 1.27027 1.14616 0.94660 0.91917 1.24909 0.95376 0.94824 0.98472 1.69914 1.29880 1.16583 1.36363 0.86465 0.78454 0.78230 0.84519 1.19612 1.20715 1.20798 1.17620 0.96297 0.86377 0.91965 1.21106 0.98284 0.91151 0.99398 1.20928 1.01023 0.98987 0.95397 1.17621 1.00789 0.80933 0.94748 1.91453 1.87466 1.44813 1.88854 1.20886 1.03296 0.91325 1.00850 1.21082 0.98461 0.97501 0.94649 0.76901 0.89328 0.89158 0.91144 0.91300 0.88694 0.87225 0.93644 0.94293 0.92429 0.85192 0.84950 0.84875 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.70 19.25 29.55 0.57 -2.13 16 2 C -0.17 -2.28 13.34 -37.13 -0.50 -2.78 16 3 C -0.02 -0.22 5.70 -29.52 -0.17 -0.39 16 4 C -0.10 -1.39 4.46 -26.73 -0.12 -1.51 16 5 C -0.13 -2.16 4.36 -27.88 -0.12 -2.28 16 6 C 0.52 10.13 7.52 -10.98 -0.08 10.05 16 7 O -0.56 -11.99 15.73 5.55 0.09 -11.90 16 8 N -0.56 -11.31 2.51 -114.71 -0.29 -11.60 16 9 C 0.24 5.26 4.88 -5.19 -0.03 5.24 16 10 C -0.54 -13.14 9.16 -34.44 -0.32 -13.45 16 11 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -23.30 13.29 55.43 0.74 -22.56 16 14 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.17 3.24 4.76 -83.66 -0.40 2.84 16 19 C -0.08 -1.44 9.53 -39.40 -0.38 -1.81 16 20 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 21 C 0.08 1.23 7.30 -39.41 -0.29 0.95 16 22 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 23 C -0.14 -2.19 10.02 -39.54 -0.40 -2.59 16 24 C -0.10 -1.65 9.69 -39.40 -0.38 -2.03 16 25 H 0.21 1.72 7.80 -54.08 -0.42 1.30 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.09 1.43 7.26 -51.93 -0.38 1.06 16 31 H 0.11 1.83 7.91 -51.93 -0.41 1.42 16 32 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 33 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -28.31 343.25 -7.24 -35.55 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.88 Total: 3.85 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.09 Total: -10.98 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.45 Total: -34.16 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.31 -7.24 -35.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760306116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds