Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47341 * 154.40023 * 3 2 1 5 5 C 1.52996 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46932 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00254 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00230 * 4.74382 * 8 6 5 10 10 C 1.50702 * 109.47016 * 270.00036 * 9 8 6 11 11 H 1.08007 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99764 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47334 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47050 * 120.00421 * 14 12 10 17 17 H 1.48503 * 109.47312 * 240.00004 * 14 12 10 18 18 C 1.40032 * 120.00268 * 184.74048 * 8 6 5 19 19 C 1.38852 * 120.04251 * 67.63927 * 18 8 6 20 20 C 1.38112 * 119.95014 * 179.72617 * 19 18 8 21 21 C 1.38478 * 120.04551 * 0.55174 * 20 19 18 22 22 F 1.35103 * 119.94991 * 179.70308 * 21 20 19 23 23 C 1.38465 * 120.09013 * 359.72749 * 21 20 19 24 24 C 1.38116 * 120.04622 * 359.97438 * 23 21 20 25 25 H 4.44652 * 5.63344 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.47754 * 34.39858 * 3 2 1 27 27 H 1.09002 * 109.47126 * 274.39888 * 3 2 1 28 28 H 1.08997 * 109.47170 * 59.99818 * 4 3 2 29 29 H 1.09002 * 109.46901 * 300.00003 * 4 3 2 30 30 H 1.08997 * 109.47166 * 59.99763 * 5 4 3 31 31 H 1.09002 * 109.47069 * 299.99848 * 5 4 3 32 32 H 1.09004 * 109.46786 * 29.99480 * 9 8 6 33 33 H 1.08996 * 109.47292 * 149.99871 * 9 8 6 34 34 H 0.97001 * 120.00222 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.02241 * 0.02562 * 19 18 8 36 36 H 1.08001 * 119.97634 * 180.25442 * 20 19 18 37 37 H 1.08009 * 119.97786 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.02003 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3018 -0.6233 5 6 4.6854 1.3022 -0.6239 6 6 5.1871 2.5835 -1.2384 7 8 4.3986 3.4143 -1.6370 8 7 6.5121 2.8062 -1.3449 9 6 7.4639 1.7611 -0.9597 10 6 7.8114 1.9110 0.4990 11 1 7.3680 2.7056 1.0808 12 6 8.6954 1.0338 1.0907 13 7 9.2356 0.0667 0.3821 14 14 9.1267 1.2201 2.8986 15 1 8.3917 2.3789 3.4660 16 1 8.7440 -0.0152 3.6286 17 1 10.5879 1.4449 3.0383 18 6 6.9791 4.0364 -1.8237 19 6 6.7966 5.1895 -1.0721 20 6 7.2630 6.4010 -1.5436 21 6 7.9022 6.4679 -2.7702 22 9 8.3523 7.6550 -3.2323 23 6 8.0801 5.3201 -3.5239 24 6 7.6206 4.1056 -3.0532 25 1 -1.0502 -0.0004 0.0000 26 1 3.0098 -0.8471 -0.5806 27 1 3.0093 -0.0780 1.0247 28 1 2.7917 2.1496 -0.0427 29 1 2.7921 1.3804 -1.6479 30 1 5.0487 0.4544 -1.2047 31 1 5.0491 1.2233 0.4006 32 1 7.0156 0.7817 -1.1276 33 1 8.3686 1.8544 -1.5603 34 1 9.8578 -0.5502 0.7983 35 1 6.2945 5.1383 -0.1173 36 1 7.1248 7.2975 -0.9574 37 1 8.5785 5.3744 -4.4805 38 1 7.7592 3.2106 -3.6416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760306116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -26.764981 kcal Electronic energy + Delta-G solvation = -22037.743296 eV Core-core repulsion = 18567.277892 eV Total energy + Delta-G solvation = -3470.465404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88156 -41.45910 -39.40936 -36.73782 -36.43480 -34.55333 -33.22067 -32.17147 -30.90703 -29.13256 -28.34719 -25.09327 -24.35254 -23.90511 -22.56544 -20.31127 -19.02130 -18.78103 -18.63205 -18.10109 -17.51682 -17.31742 -16.67017 -16.55808 -16.25404 -15.62971 -15.35248 -15.16598 -14.55421 -14.46991 -14.36098 -14.22383 -13.97306 -13.53622 -13.39843 -13.35022 -13.17914 -12.86451 -12.68505 -12.38654 -12.16914 -12.06067 -11.89775 -11.69902 -11.13748 -10.94662 -10.85883 -10.56862 -10.11153 -10.09210 -9.22959 -8.19846 -6.33185 0.08070 0.24165 1.41603 1.46243 1.54759 1.66948 1.88394 1.96093 2.19893 2.43121 2.57462 3.11984 3.24673 3.52931 3.75378 3.80511 3.90073 4.10649 4.22891 4.24309 4.39425 4.45547 4.54378 4.66788 4.75884 4.88589 4.89855 5.00537 5.08009 5.13154 5.16671 5.22567 5.24104 5.34763 5.43948 5.64179 5.72792 6.02558 6.04742 6.46404 6.75087 6.77887 7.25708 7.39845 8.86114 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.005823 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.831550 B = 4807.245182 C = 7174.533243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.217 4.217 3 C -0.013 4.013 4 C -0.084 4.084 5 C -0.127 4.127 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.564 5.564 9 C 0.253 3.747 10 C -0.542 4.542 11 H 0.053 0.947 12 C 0.028 3.972 13 N -0.917 5.917 14 Si 0.951 3.049 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.283 1.283 18 C 0.133 3.867 19 C -0.097 4.097 20 C -0.139 4.139 21 C 0.078 3.922 22 F -0.141 7.141 23 C -0.134 4.134 24 C -0.105 4.105 25 H 0.246 0.754 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 3.130 -3.205 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.217 4.217 3 C -0.049 4.049 4 C -0.122 4.122 5 C -0.166 4.166 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.291 5.291 9 C 0.134 3.866 10 C -0.581 4.581 11 H 0.071 0.929 12 C -0.173 4.173 13 N -0.556 5.556 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.209 1.209 18 C 0.042 3.958 19 C -0.117 4.117 20 C -0.159 4.159 21 C 0.059 3.941 22 F -0.120 7.120 23 C -0.154 4.154 24 C -0.125 4.125 25 H 0.263 0.737 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.138 3.407 -3.407 8.612 hybrid contribution 0.536 0.128 0.952 1.100 sum -6.601 3.535 -2.456 7.880 Atomic orbital electron populations 1.25701 0.96874 0.99919 1.00431 1.23649 0.95471 1.01360 1.01181 1.18768 0.84479 0.98437 1.03229 1.21139 0.92616 0.97119 1.01368 1.21633 0.96583 0.94745 1.03641 1.21226 0.81031 0.89577 0.77391 1.90614 1.55618 1.49170 1.50974 1.45978 1.06776 1.13949 1.62432 1.19283 0.87251 0.85377 0.94727 1.21612 1.26762 1.14074 0.95653 0.92858 1.25528 0.95382 0.94636 1.01749 1.69988 1.30553 1.17299 1.37757 0.85608 0.77855 0.78241 0.80597 1.19627 1.19999 1.20932 1.18011 0.98049 0.86313 0.93387 1.21136 0.99286 0.91862 0.99407 1.21144 0.99984 0.99027 0.95697 1.17715 1.00428 0.81303 0.94697 1.91473 1.87312 1.44450 1.88727 1.21189 1.02106 0.90298 1.01759 1.21243 0.98369 0.98729 0.94151 0.73746 0.88043 0.88503 0.92520 0.92060 0.87517 0.87707 0.93629 0.95998 0.92273 0.86030 0.82489 0.81740 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.64 19.25 74.32 1.43 -3.21 16 2 C -0.22 -5.53 13.34 31.12 0.42 -5.12 16 3 C -0.01 -0.31 5.70 28.79 0.16 -0.14 16 4 C -0.08 -2.45 4.46 30.59 0.14 -2.31 16 5 C -0.13 -4.12 4.36 29.85 0.13 -3.99 16 6 C 0.52 20.42 7.52 87.66 0.66 21.08 16 7 O -0.58 -25.45 15.73 -3.04 -0.05 -25.50 16 8 N -0.56 -23.04 2.51 -635.23 -1.59 -24.63 16 9 C 0.25 11.35 4.88 85.63 0.42 11.77 16 10 C -0.54 -26.64 9.16 25.60 0.23 -26.40 16 11 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 12 C 0.03 1.39 5.46 84.65 0.46 1.85 16 13 N -0.92 -47.99 13.29 21.44 0.28 -47.70 16 14 Si 0.95 40.14 29.54 68.60 2.03 42.17 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 C 0.13 5.16 4.76 38.12 0.18 5.34 16 19 C -0.10 -3.53 9.53 22.39 0.21 -3.31 16 20 C -0.14 -4.26 10.02 22.30 0.22 -4.03 16 21 C 0.08 2.31 7.30 22.38 0.16 2.47 16 22 F -0.14 -3.95 17.27 44.97 0.78 -3.17 16 23 C -0.13 -3.84 10.02 22.29 0.22 -3.61 16 24 C -0.11 -3.51 9.69 22.39 0.22 -3.30 16 25 H 0.25 3.24 7.80 -4.41 -0.03 3.21 16 26 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.11 3.21 7.26 -2.39 -0.02 3.19 16 31 H 0.10 3.53 7.91 -2.39 -0.02 3.52 16 32 H 0.05 2.03 6.47 -2.38 -0.02 2.02 16 33 H 0.02 1.06 7.86 -2.39 -0.02 1.04 16 34 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 35 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -59.69 343.25 7.77 -51.92 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.05 Total: 19.84 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.27 Total: -12.92 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.31 Total: -72.33 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -59.69 7.77 -51.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760306116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.159 kcal (2) G-P(sol) polarization free energy of solvation -59.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds