Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46917 * 2 1 4 4 N 1.46498 * 109.46943 * 119.99742 * 2 1 3 5 5 N 1.28445 * 125.19259 * 294.66184 * 4 2 1 6 6 C 1.30861 * 110.92771 * 179.85565 * 5 4 2 7 7 C 1.39670 * 107.86906 * 0.40262 * 6 5 4 8 8 C 1.36603 * 125.18907 * 114.96591 * 4 2 1 9 9 C 1.47142 * 126.88322 * 359.97438 * 8 4 2 10 10 O 1.21662 * 120.00025 * 5.06415 * 9 8 4 11 11 N 1.34769 * 120.00037 * 185.06320 * 9 8 4 12 12 C 1.40516 * 120.00136 * 185.17293 * 11 9 8 13 13 C 1.40673 * 126.08716 * 0.02690 * 12 11 9 14 14 N 1.30906 * 108.38836 * 179.97438 * 13 12 11 15 15 N 1.40069 * 108.41447 * 0.02562 * 14 13 12 16 16 C 1.37312 * 126.06983 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00289 * 174.95385 * 16 15 14 18 18 C 1.38988 * 119.99507 * 354.94639 * 16 15 14 19 19 N 1.31289 * 120.00287 * 5.02873 * 18 16 15 20 20 Si 1.86804 * 119.99693 * 185.02260 * 18 16 15 21 21 H 1.48505 * 109.46814 * 95.00674 * 20 18 16 22 22 H 1.48502 * 109.46808 * 215.00285 * 20 18 16 23 23 H 1.48495 * 109.47510 * 335.00446 * 20 18 16 24 24 C 1.35707 * 126.08483 * 179.71440 * 12 11 9 25 25 H 1.08998 * 109.47002 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.46993 * 300.00357 * 1 2 3 27 27 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47204 * 240.00380 * 2 1 3 29 29 H 1.08998 * 109.46873 * 60.00178 * 3 2 1 30 30 H 1.09004 * 109.46763 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47261 * 299.99812 * 3 2 1 32 32 H 1.08003 * 126.06545 * 180.13338 * 6 5 4 33 33 H 1.07996 * 127.33083 * 179.76523 * 7 6 5 34 34 H 0.96999 * 120.00360 * 5.17755 * 11 9 8 35 35 H 1.08001 * 125.80409 * 359.93751 * 13 12 11 36 36 H 0.97008 * 120.00163 * 179.97438 * 19 18 16 37 37 H 1.07993 * 126.24926 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8521 -0.2863 2.4040 6 6 2.3990 -1.1171 3.2544 7 6 2.9828 -2.1550 2.5245 8 6 2.7250 -1.8596 1.1970 9 6 3.1307 -2.6471 0.0221 10 8 2.9163 -2.2231 -1.0980 11 7 3.7398 -3.8379 0.1866 12 6 4.2246 -4.5394 -0.9302 13 6 4.1441 -4.1206 -2.2707 14 7 4.7032 -5.0344 -3.0231 15 7 5.1604 -6.0689 -2.1969 16 6 5.8036 -7.2094 -2.6103 17 1 6.1874 -7.9074 -1.8810 18 6 5.9606 -7.4655 -3.9673 19 7 5.5830 -6.5720 -4.8520 20 14 6.7092 -9.0810 -4.5324 21 1 5.6251 -10.0491 -4.8369 22 1 7.5232 -8.8493 -5.7526 23 1 7.5743 -9.6287 -3.4569 24 6 4.8591 -5.7388 -0.9071 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.4025 -1.0157 4.3296 33 1 3.5209 -3.0069 2.9131 34 1 3.8435 -4.2109 1.0760 35 1 3.6967 -3.2017 -2.6198 36 1 5.6929 -6.7506 -5.7992 37 1 5.0829 -6.3260 -0.0288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765342426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = 126.015102 kcal Electronic energy + Delta-G solvation = -22280.006119 eV Core-core repulsion = 18868.378469 eV Total energy + Delta-G solvation = -3411.627650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49517 -39.88179 -38.42734 -35.81125 -34.27952 -33.24331 -30.95234 -30.30770 -30.18306 -27.75874 -27.42534 -25.08622 -23.49452 -22.73756 -21.24952 -20.87217 -19.45238 -19.31388 -17.79186 -17.25777 -15.90201 -15.79352 -15.48032 -15.22733 -14.82060 -14.49032 -14.32817 -13.95208 -13.79368 -13.21369 -13.04835 -13.00388 -12.90100 -12.36541 -12.25583 -11.73063 -11.52737 -11.49677 -11.32359 -11.27545 -10.96325 -10.65775 -10.55019 -10.27635 -9.35718 -9.24083 -9.12486 -8.97991 -8.86682 -8.11233 -6.76543 -6.60282 -4.27242 1.39694 2.43182 2.66388 2.92418 3.03152 3.08598 3.28391 3.52162 3.71214 3.84259 4.38648 4.45319 4.62090 4.80322 4.87576 4.97665 5.01376 5.15469 5.18853 5.40541 5.49396 5.57933 5.59245 5.75035 5.77162 5.99885 6.06141 6.19942 6.37761 6.54231 6.80997 6.83703 6.89954 7.03539 7.17724 7.80551 8.02269 8.17032 8.20166 8.53643 8.73060 9.32435 9.61046 10.35806 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.003347 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.739197 B = 8363.485602 C = 8961.334117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.156 4.156 4 N -0.249 5.249 5 N -0.282 5.282 6 C -0.009 4.009 7 C -0.200 4.200 8 C -0.021 4.021 9 C 0.572 3.428 10 O -0.538 6.538 11 N -0.601 5.601 12 C -0.063 4.063 13 C -0.029 4.029 14 N -0.261 5.261 15 N -0.140 5.140 16 C -0.323 4.323 17 H 0.118 0.882 18 C 0.047 3.953 19 N -0.768 5.768 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.080 4.080 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.141 0.859 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.401 0.599 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 8.072 11.727 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.038 5.038 5 N -0.114 5.114 6 C -0.184 4.184 7 C -0.229 4.229 8 C -0.150 4.150 9 C 0.357 3.643 10 O -0.417 6.417 11 N -0.243 5.243 12 C -0.168 4.168 13 C -0.205 4.205 14 N -0.092 5.092 15 N 0.092 4.908 16 C -0.456 4.456 17 H 0.135 0.865 18 C -0.171 4.171 19 N -0.395 5.395 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.231 4.231 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.235 0.765 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.987 9.153 9.266 14.335 hybrid contribution 0.654 -1.454 1.360 2.096 sum -5.333 7.698 10.626 14.164 Atomic orbital electron populations 1.22113 0.93101 1.03109 1.03245 1.22154 0.95810 0.94597 0.85008 1.22079 1.01993 0.94049 1.03295 1.45956 1.36840 1.15478 1.05505 1.73079 1.22335 1.26029 0.89963 1.23487 1.01723 0.93499 0.99741 1.22228 1.07022 1.02806 0.90866 1.21507 1.04983 0.92789 0.95770 1.16702 0.79689 0.81305 0.86605 1.90612 1.56265 1.70115 1.24716 1.42086 1.55152 1.18099 1.08928 1.17216 1.15641 0.96946 0.87032 1.24101 1.05560 1.01164 0.89631 1.78264 1.18988 0.96153 1.15755 1.44565 1.31511 1.12585 1.02101 1.19910 1.36072 0.96452 0.93119 0.86493 1.25650 0.96460 0.99297 0.95653 1.70217 1.35147 1.31914 1.02187 0.85803 0.79095 0.80234 0.78980 1.19609 1.20073 1.18738 1.21261 1.13090 0.99086 0.89649 0.90279 0.91504 0.91952 0.84200 0.91303 0.91968 0.90355 0.80047 0.82416 0.76520 0.80712 0.91411 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.45 37.16 0.35 -1.36 16 2 C 0.12 1.60 3.56 -67.93 -0.24 1.36 16 3 C -0.16 -1.68 9.30 37.16 0.35 -1.33 16 4 N -0.25 -3.59 3.09 -50.69 -0.16 -3.75 16 5 N -0.28 -3.85 11.52 30.59 0.35 -3.50 16 6 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 7 C -0.20 -2.44 10.50 -38.98 -0.41 -2.85 16 8 C -0.02 -0.32 6.96 -82.06 -0.57 -0.89 16 9 C 0.57 10.28 7.76 -12.65 -0.10 10.18 16 10 O -0.54 -11.08 11.56 5.22 0.06 -11.02 16 11 N -0.60 -10.68 5.44 -11.05 -0.06 -10.74 16 12 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 13 C -0.03 -0.74 10.85 -17.03 -0.18 -0.93 16 14 N -0.26 -7.45 10.41 30.81 0.32 -7.13 16 15 N -0.14 -3.79 3.74 -11.40 -0.04 -3.83 16 16 C -0.32 -8.41 10.24 -14.82 -0.15 -8.56 16 17 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 18 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 19 N -0.77 -21.16 11.83 55.49 0.66 -20.50 16 20 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.14 2.09 5.32 -51.93 -0.28 1.81 16 29 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.16 1.45 7.62 -52.49 -0.40 1.05 16 34 H 0.40 5.54 7.90 -40.82 -0.32 5.22 16 35 H 0.18 4.42 5.93 -52.49 -0.31 4.10 16 36 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -32.74 320.83 -5.33 -38.06 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.24 Total: 11.61 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.03 Total: -7.62 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 1.07 Total: -49.46 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.74 -5.33 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765342426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.079 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds