Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46917 * 2 1 4 4 N 1.46498 * 109.46943 * 119.99742 * 2 1 3 5 5 N 1.28445 * 125.19259 * 294.66184 * 4 2 1 6 6 C 1.30861 * 110.92771 * 179.85565 * 5 4 2 7 7 C 1.39670 * 107.86906 * 0.40262 * 6 5 4 8 8 C 1.36603 * 125.18907 * 114.96591 * 4 2 1 9 9 C 1.47142 * 126.88322 * 359.97438 * 8 4 2 10 10 O 1.21662 * 120.00025 * 5.06415 * 9 8 4 11 11 N 1.34769 * 120.00037 * 185.06320 * 9 8 4 12 12 C 1.40516 * 120.00136 * 185.17293 * 11 9 8 13 13 C 1.40673 * 126.08716 * 0.02690 * 12 11 9 14 14 N 1.30906 * 108.38836 * 179.97438 * 13 12 11 15 15 N 1.40069 * 108.41447 * 0.02562 * 14 13 12 16 16 C 1.37312 * 126.06983 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00289 * 174.95385 * 16 15 14 18 18 C 1.38988 * 119.99507 * 354.94639 * 16 15 14 19 19 N 1.31289 * 120.00287 * 5.02873 * 18 16 15 20 20 Si 1.86804 * 119.99693 * 185.02260 * 18 16 15 21 21 H 1.48505 * 109.46814 * 95.00674 * 20 18 16 22 22 H 1.48502 * 109.46808 * 215.00285 * 20 18 16 23 23 H 1.48495 * 109.47510 * 335.00446 * 20 18 16 24 24 C 1.35707 * 126.08483 * 179.71440 * 12 11 9 25 25 H 1.08998 * 109.47002 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.46993 * 300.00357 * 1 2 3 27 27 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47204 * 240.00380 * 2 1 3 29 29 H 1.08998 * 109.46873 * 60.00178 * 3 2 1 30 30 H 1.09004 * 109.46763 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47261 * 299.99812 * 3 2 1 32 32 H 1.08003 * 126.06545 * 180.13338 * 6 5 4 33 33 H 1.07996 * 127.33083 * 179.76523 * 7 6 5 34 34 H 0.96999 * 120.00360 * 5.17755 * 11 9 8 35 35 H 1.08001 * 125.80409 * 359.93751 * 13 12 11 36 36 H 0.97008 * 120.00163 * 179.97438 * 19 18 16 37 37 H 1.07993 * 126.24926 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8521 -0.2863 2.4040 6 6 2.3990 -1.1171 3.2544 7 6 2.9828 -2.1550 2.5245 8 6 2.7250 -1.8596 1.1970 9 6 3.1307 -2.6471 0.0221 10 8 2.9163 -2.2231 -1.0980 11 7 3.7398 -3.8379 0.1866 12 6 4.2246 -4.5394 -0.9302 13 6 4.1441 -4.1206 -2.2707 14 7 4.7032 -5.0344 -3.0231 15 7 5.1604 -6.0689 -2.1969 16 6 5.8036 -7.2094 -2.6103 17 1 6.1874 -7.9074 -1.8810 18 6 5.9606 -7.4655 -3.9673 19 7 5.5830 -6.5720 -4.8520 20 14 6.7092 -9.0810 -4.5324 21 1 5.6251 -10.0491 -4.8369 22 1 7.5232 -8.8493 -5.7526 23 1 7.5743 -9.6287 -3.4569 24 6 4.8591 -5.7388 -0.9071 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.4025 -1.0157 4.3296 33 1 3.5209 -3.0069 2.9131 34 1 3.8435 -4.2109 1.0760 35 1 3.6967 -3.2017 -2.6198 36 1 5.6929 -6.7506 -5.7992 37 1 5.0829 -6.3260 -0.0288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765342426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = 103.869622 kcal Electronic energy + Delta-G solvation = -22280.966419 eV Core-core repulsion = 18868.378469 eV Total energy + Delta-G solvation = -3412.587950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.53415 -41.67317 -40.02318 -36.81842 -35.90177 -35.01202 -32.43177 -31.84899 -31.27511 -29.51543 -28.29574 -26.91833 -24.77210 -23.78776 -22.88967 -22.29341 -21.20457 -20.53162 -19.39364 -18.66722 -17.43600 -17.03202 -16.98035 -16.79593 -15.93209 -15.82542 -15.72409 -15.37916 -15.01886 -14.93637 -14.71758 -14.05643 -13.97040 -13.49470 -13.32496 -13.17793 -13.10417 -12.96547 -12.81677 -12.42574 -12.28134 -12.05902 -11.92130 -11.70508 -11.04755 -10.87510 -10.76502 -10.22550 -10.09844 -9.97767 -8.55641 -8.47226 -6.24307 0.21976 1.29182 1.35589 1.42565 1.59464 1.65493 1.78885 2.05870 2.06824 2.28063 2.58893 2.88372 3.09094 3.50661 3.65642 3.87863 4.00811 4.18105 4.20748 4.44511 4.56639 4.59280 4.60405 4.63729 4.71715 4.85774 4.91046 5.00525 5.05010 5.11746 5.14590 5.28287 5.39720 5.61110 5.83041 5.95418 6.28153 6.59898 6.72488 7.13033 7.23006 7.45544 7.66503 8.52290 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.003347 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.739197 B = 8363.485602 C = 8961.334117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 C -0.148 4.148 4 N -0.258 5.258 5 N -0.291 5.291 6 C -0.006 4.006 7 C -0.178 4.178 8 C -0.056 4.056 9 C 0.573 3.427 10 O -0.570 6.570 11 N -0.594 5.594 12 C -0.048 4.048 13 C -0.054 4.054 14 N -0.310 5.310 15 N -0.167 5.167 16 C -0.354 4.354 17 H 0.143 0.857 18 C -0.005 4.005 19 N -0.824 5.824 20 Si 1.019 2.981 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.242 1.242 24 C -0.074 4.074 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.221 0.779 33 H 0.191 0.809 34 H 0.422 0.578 35 H 0.169 0.831 36 H 0.276 0.724 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 7.385 14.690 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.205 4.205 4 N -0.047 5.047 5 N -0.124 5.124 6 C -0.181 4.181 7 C -0.207 4.207 8 C -0.184 4.184 9 C 0.361 3.639 10 O -0.451 6.451 11 N -0.238 5.238 12 C -0.154 4.154 13 C -0.230 4.230 14 N -0.142 5.142 15 N 0.065 4.935 16 C -0.485 4.485 17 H 0.160 0.840 18 C -0.217 4.217 19 N -0.452 5.452 20 Si 0.838 3.162 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.165 1.165 24 C -0.224 4.224 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.238 0.762 33 H 0.208 0.792 34 H 0.260 0.740 35 H 0.186 0.814 36 H 0.086 0.914 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.825 8.474 12.292 16.026 hybrid contribution 0.517 -1.086 0.617 1.352 sum -5.307 7.388 12.909 15.792 Atomic orbital electron populations 1.22065 0.91624 1.02471 1.04550 1.22208 0.97015 0.95239 0.83993 1.22033 1.00995 0.92922 1.04592 1.46118 1.37088 1.15428 1.06025 1.73089 1.22686 1.26678 0.89912 1.24194 1.00247 0.92427 1.01270 1.22702 1.05333 1.03364 0.89323 1.21278 1.07634 0.93804 0.95677 1.17167 0.78481 0.81112 0.87174 1.90610 1.57160 1.70793 1.26510 1.41928 1.55253 1.18007 1.08622 1.17256 1.14106 0.96738 0.87271 1.24165 1.06382 1.00991 0.91423 1.78160 1.20624 0.97569 1.17864 1.44850 1.32696 1.12828 1.03151 1.20652 1.36684 0.96798 0.94368 0.84004 1.26871 0.96316 1.03107 0.95418 1.70395 1.37488 1.34701 1.02584 0.84580 0.78209 0.74832 0.78605 1.19229 1.20237 1.16481 1.22005 1.11465 0.99164 0.89783 0.88234 0.90874 0.93492 0.86852 0.90738 0.93387 0.88261 0.76213 0.79156 0.73972 0.81430 0.91390 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.45 71.98 0.68 -2.47 16 2 C 0.12 2.97 3.56 45.00 0.16 3.13 16 3 C -0.15 -3.08 9.30 71.98 0.67 -2.41 16 4 N -0.26 -7.18 3.09 -314.28 -0.97 -8.15 16 5 N -0.29 -7.31 11.52 -57.14 -0.66 -7.97 16 6 C -0.01 -0.12 12.03 85.18 1.02 0.90 16 7 C -0.18 -3.75 10.50 22.66 0.24 -3.51 16 8 C -0.06 -1.62 6.96 40.78 0.28 -1.33 16 9 C 0.57 20.59 7.76 86.58 0.67 21.26 16 10 O -0.57 -24.43 11.56 -4.23 -0.05 -24.48 16 11 N -0.59 -20.41 5.44 -307.11 -1.67 -22.08 16 12 C -0.05 -2.14 6.90 37.76 0.26 -1.88 16 13 C -0.05 -2.91 10.85 85.43 0.93 -1.98 16 14 N -0.31 -18.51 10.41 -56.45 -0.59 -19.10 16 15 N -0.17 -9.10 3.74 -190.00 -0.71 -9.81 16 16 C -0.35 -18.43 10.24 84.01 0.86 -17.57 16 17 H 0.14 6.36 7.84 -2.91 -0.02 6.33 16 18 C -0.01 -0.27 5.50 84.95 0.47 0.19 16 19 N -0.82 -47.15 11.83 21.66 0.26 -46.89 16 20 Si 1.02 38.04 29.55 68.60 2.03 40.06 16 21 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.24 -8.09 7.11 99.48 0.71 -7.39 16 24 C -0.07 -3.31 11.50 83.38 0.96 -2.35 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 3.56 5.32 -2.39 -0.01 3.54 16 29 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 30 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.22 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.19 2.59 7.62 -2.91 -0.02 2.57 16 34 H 0.42 10.51 7.90 -92.71 -0.73 9.78 16 35 H 0.17 9.04 5.93 -2.91 -0.02 9.02 16 36 H 0.28 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.19 6.61 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -75.38 320.83 5.22 -70.16 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.38 Total: 36.29 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 7.20 Total: -8.03 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.34 Total: -114.00 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Total: -75.38 5.22 -70.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765342426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.035 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds