Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 N 1.46497 * 109.47186 * 120.00497 * 2 1 3 5 5 C 1.34271 * 125.75401 * 274.99290 * 4 2 1 6 6 C 1.38047 * 107.41724 * 179.97438 * 5 4 2 7 7 C 1.47423 * 126.41704 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99771 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.40563 * 119.99650 * 180.02562 * 9 7 6 11 11 C 1.40657 * 126.08779 * 359.69020 * 10 9 7 12 12 N 1.30907 * 108.38992 * 179.81967 * 11 10 9 13 13 N 1.40068 * 108.40800 * 0.43612 * 12 11 10 14 14 C 1.37319 * 126.06968 * 179.69430 * 13 12 11 15 15 H 1.07998 * 120.00187 * 174.15947 * 14 13 12 16 16 C 1.38984 * 119.99918 * 354.16712 * 14 13 12 17 17 N 1.31296 * 120.00395 * 5.93421 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 185.93448 * 16 14 13 19 19 H 1.48499 * 109.47421 * 94.97854 * 18 16 14 20 20 H 1.48504 * 109.47386 * 214.97620 * 18 16 14 21 21 H 1.48503 * 109.46948 * 334.97931 * 18 16 14 22 22 C 1.35689 * 126.08026 * 179.97438 * 10 9 7 23 23 C 1.41292 * 107.16969 * 0.02562 * 6 5 4 24 24 N 1.30458 * 108.02369 * 359.74046 * 23 6 5 25 25 H 1.08995 * 109.47604 * 60.00020 * 1 2 3 26 26 H 1.09001 * 109.46804 * 299.99212 * 1 2 3 27 27 H 1.09010 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46431 * 240.00340 * 2 1 3 29 29 H 1.08995 * 109.47446 * 300.00066 * 3 2 1 30 30 H 1.09001 * 109.46768 * 60.00766 * 3 2 1 31 31 H 1.09005 * 109.47030 * 180.02562 * 3 2 1 32 32 H 1.08000 * 126.29544 * 359.96749 * 5 4 2 33 33 H 0.96997 * 120.00159 * 359.97438 * 9 7 6 34 34 H 1.08005 * 125.80039 * 359.97438 * 11 10 9 35 35 H 0.96995 * 120.00830 * 180.02562 * 17 16 14 36 36 H 1.08001 * 126.24927 * 359.97438 * 22 10 9 37 37 H 1.08002 * 125.98855 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1905 -0.1364 2.4068 6 6 2.6623 -1.1227 3.2496 7 6 2.9942 -0.9686 4.6777 8 8 2.8581 0.1112 5.2206 9 7 3.4483 -2.0244 5.3817 10 6 3.7642 -1.8776 6.7435 11 6 3.6613 -0.6930 7.4948 12 7 4.0391 -0.9481 8.7219 13 7 4.4062 -2.2975 8.8002 14 6 4.8644 -2.9471 9.9199 15 1 5.0307 -4.0139 9.8952 16 6 5.1139 -2.2317 11.0851 17 7 4.8025 -0.9580 11.1529 18 14 5.8925 -3.0822 12.5547 19 1 7.3617 -2.8683 12.5295 20 1 5.3315 -2.5170 13.8082 21 1 5.6031 -4.5375 12.4949 22 6 4.2277 -2.8523 7.5658 23 6 2.7689 -2.3072 2.4868 24 7 2.3791 -2.0406 1.2707 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.9957 0.8921 2.6726 33 1 3.5565 -2.8857 4.9488 34 1 3.3252 0.2638 7.1231 35 1 4.9770 -0.4586 11.9658 36 1 4.4202 -3.8795 7.2936 37 1 3.1094 -3.2663 2.8482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786850327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 123.615453 kcal Electronic energy + Delta-G solvation = -21697.494929 eV Core-core repulsion = 18285.763223 eV Total energy + Delta-G solvation = -3411.731706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44240 -39.67431 -38.17791 -36.00849 -34.09264 -33.06697 -30.52319 -30.45076 -29.93730 -27.80148 -27.57180 -25.00136 -23.62590 -22.28143 -20.86791 -20.32294 -19.83723 -19.23070 -17.83048 -17.13436 -15.77186 -15.65037 -15.36677 -15.14303 -15.01693 -14.45355 -14.19196 -14.01983 -13.36803 -13.27639 -13.05772 -12.93390 -12.77452 -12.62880 -12.51979 -11.82795 -11.65002 -11.61851 -11.36655 -11.23396 -11.02568 -10.82994 -10.48842 -10.05716 -9.64404 -9.12282 -9.08505 -8.72846 -8.66572 -7.97646 -6.59312 -6.50333 -4.15978 1.59811 2.18208 2.23936 2.99812 3.08767 3.13934 3.51958 3.74312 3.94309 3.95997 4.14745 4.42119 4.57678 4.59995 4.66480 4.71881 4.91345 5.03063 5.07153 5.11113 5.22436 5.33758 5.36657 5.42816 5.65895 5.68808 5.82864 6.31979 6.36680 6.58745 6.77956 6.99575 7.05947 7.22807 7.33308 7.51352 7.93354 8.30374 8.39419 8.72227 9.01376 9.45571 9.74899 10.46068 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.053138 B = 0.002781 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.801181 B =10064.389029 C =10428.602824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.360 5.360 5 C 0.122 3.878 6 C -0.277 4.277 7 C 0.578 3.422 8 O -0.547 6.547 9 N -0.620 5.620 10 C -0.054 4.054 11 C -0.033 4.033 12 N -0.261 5.261 13 N -0.145 5.145 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.771 5.771 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.084 4.084 23 C 0.077 3.923 24 N -0.302 5.302 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.185 0.815 33 H 0.395 0.605 34 H 0.177 0.823 35 H 0.274 0.726 36 H 0.145 0.855 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -0.019 -19.836 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.140 5.140 5 C -0.028 4.028 6 C -0.292 4.292 7 C 0.365 3.635 8 O -0.425 6.425 9 N -0.262 5.262 10 C -0.160 4.160 11 C -0.209 4.209 12 N -0.093 5.093 13 N 0.087 4.913 14 C -0.456 4.456 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.398 5.398 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.234 4.234 23 C -0.111 4.111 24 N -0.122 5.122 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.202 0.798 33 H 0.228 0.772 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.453 1.016 -19.421 20.197 hybrid contribution 0.410 -0.972 0.360 1.115 sum -5.043 0.044 -19.060 19.716 Atomic orbital electron populations 1.22261 0.93365 1.03482 1.03347 1.21352 0.95016 0.92894 0.85596 1.22245 1.02605 0.93799 1.04012 1.48700 1.49396 1.07427 1.08469 1.22827 0.95941 0.99655 0.84404 1.20351 1.18466 0.94451 0.95972 1.17051 0.78173 0.84007 0.84231 1.90655 1.54778 1.26501 1.70612 1.42260 1.63651 1.11744 1.08506 1.17259 1.19103 0.95840 0.83788 1.24125 1.06882 0.98513 0.91387 1.78231 1.21418 0.92860 1.16752 1.44528 1.35357 1.06179 1.05227 1.19851 1.44536 0.93512 0.87675 0.86677 1.25630 0.96332 0.95613 0.99488 1.70225 1.35180 1.07101 1.27251 0.85831 0.79306 0.79511 0.79595 1.19695 1.20164 1.18820 1.21265 1.16745 0.98186 0.87252 1.24072 0.97586 0.98982 0.90422 1.77109 1.21385 0.92903 1.20761 0.90322 0.91596 0.91495 0.87740 0.89781 0.91107 0.91232 0.79835 0.77187 0.80675 0.91557 0.83706 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 9.52 37.16 0.35 -0.68 16 2 C 0.15 1.11 3.91 -67.93 -0.27 0.84 16 3 C -0.17 -0.93 8.82 37.16 0.33 -0.60 16 4 N -0.36 -3.97 3.50 -54.31 -0.19 -4.16 16 5 C 0.12 1.52 10.39 -16.55 -0.17 1.35 16 6 C -0.28 -4.05 6.13 -105.07 -0.64 -4.69 16 7 C 0.58 10.79 7.78 -12.52 -0.10 10.70 16 8 O -0.55 -12.14 14.05 5.25 0.07 -12.07 16 9 N -0.62 -11.52 5.46 -10.97 -0.06 -11.58 16 10 C -0.05 -1.29 6.90 -83.85 -0.58 -1.86 16 11 C -0.03 -0.90 10.85 -17.03 -0.18 -1.09 16 12 N -0.26 -7.75 10.42 30.80 0.32 -7.43 16 13 N -0.14 -4.05 3.74 -11.41 -0.04 -4.09 16 14 C -0.32 -8.69 10.24 -14.82 -0.15 -8.85 16 15 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 17 N -0.77 -21.86 11.84 55.49 0.66 -21.20 16 18 Si 0.93 19.20 29.56 -169.99 -5.02 14.17 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.08 -2.01 11.49 -16.39 -0.19 -2.19 16 23 C 0.08 0.96 11.50 -16.98 -0.20 0.76 16 24 N -0.30 -3.84 12.50 30.86 0.39 -3.46 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 7.13 -51.93 -0.37 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 1.98 7.23 -52.49 -0.38 1.60 16 33 H 0.40 5.68 7.78 -40.82 -0.32 5.36 16 34 H 0.18 4.68 5.91 -52.48 -0.31 4.37 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 37 H 0.19 1.73 7.50 -52.49 -0.39 1.34 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -35.68 324.02 -5.17 -40.85 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.28 Total: 9.27 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.89 Total: -5.19 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 1.07 Total: -51.92 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.68 -5.17 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786850327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.461 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds