Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 N 1.46497 * 109.47186 * 120.00497 * 2 1 3 5 5 C 1.34271 * 125.75401 * 274.99290 * 4 2 1 6 6 C 1.38047 * 107.41724 * 179.97438 * 5 4 2 7 7 C 1.47423 * 126.41704 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99771 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.40563 * 119.99650 * 180.02562 * 9 7 6 11 11 C 1.40657 * 126.08779 * 359.69020 * 10 9 7 12 12 N 1.30907 * 108.38992 * 179.81967 * 11 10 9 13 13 N 1.40068 * 108.40800 * 0.43612 * 12 11 10 14 14 C 1.37319 * 126.06968 * 179.69430 * 13 12 11 15 15 H 1.07998 * 120.00187 * 174.15947 * 14 13 12 16 16 C 1.38984 * 119.99918 * 354.16712 * 14 13 12 17 17 N 1.31296 * 120.00395 * 5.93421 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 185.93448 * 16 14 13 19 19 H 1.48499 * 109.47421 * 94.97854 * 18 16 14 20 20 H 1.48504 * 109.47386 * 214.97620 * 18 16 14 21 21 H 1.48503 * 109.46948 * 334.97931 * 18 16 14 22 22 C 1.35689 * 126.08026 * 179.97438 * 10 9 7 23 23 C 1.41292 * 107.16969 * 0.02562 * 6 5 4 24 24 N 1.30458 * 108.02369 * 359.74046 * 23 6 5 25 25 H 1.08995 * 109.47604 * 60.00020 * 1 2 3 26 26 H 1.09001 * 109.46804 * 299.99212 * 1 2 3 27 27 H 1.09010 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46431 * 240.00340 * 2 1 3 29 29 H 1.08995 * 109.47446 * 300.00066 * 3 2 1 30 30 H 1.09001 * 109.46768 * 60.00766 * 3 2 1 31 31 H 1.09005 * 109.47030 * 180.02562 * 3 2 1 32 32 H 1.08000 * 126.29544 * 359.96749 * 5 4 2 33 33 H 0.96997 * 120.00159 * 359.97438 * 9 7 6 34 34 H 1.08005 * 125.80039 * 359.97438 * 11 10 9 35 35 H 0.96995 * 120.00830 * 180.02562 * 17 16 14 36 36 H 1.08001 * 126.24927 * 359.97438 * 22 10 9 37 37 H 1.08002 * 125.98855 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1905 -0.1364 2.4068 6 6 2.6623 -1.1227 3.2496 7 6 2.9942 -0.9686 4.6777 8 8 2.8581 0.1112 5.2206 9 7 3.4483 -2.0244 5.3817 10 6 3.7642 -1.8776 6.7435 11 6 3.6613 -0.6930 7.4948 12 7 4.0391 -0.9481 8.7219 13 7 4.4062 -2.2975 8.8002 14 6 4.8644 -2.9471 9.9199 15 1 5.0307 -4.0139 9.8952 16 6 5.1139 -2.2317 11.0851 17 7 4.8025 -0.9580 11.1529 18 14 5.8925 -3.0822 12.5547 19 1 7.3617 -2.8683 12.5295 20 1 5.3315 -2.5170 13.8082 21 1 5.6031 -4.5375 12.4949 22 6 4.2277 -2.8523 7.5658 23 6 2.7689 -2.3072 2.4868 24 7 2.3791 -2.0406 1.2707 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.9957 0.8921 2.6726 33 1 3.5565 -2.8857 4.9488 34 1 3.3252 0.2638 7.1231 35 1 4.9770 -0.4586 11.9658 36 1 4.4202 -3.8795 7.2936 37 1 3.1094 -3.2663 2.8482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786850327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = 98.456430 kcal Electronic energy + Delta-G solvation = -21698.585906 eV Core-core repulsion = 18285.763223 eV Total energy + Delta-G solvation = -3412.822683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.44266 -41.53705 -39.79295 -36.70437 -35.85864 -34.89750 -32.26310 -31.44450 -31.25827 -29.39579 -28.23649 -26.85621 -24.78548 -23.33111 -22.74480 -21.63285 -21.01616 -20.81777 -19.30079 -18.66465 -17.40415 -16.93749 -16.64708 -16.51253 -16.01606 -15.74695 -15.67726 -15.09722 -14.92190 -14.83492 -14.69677 -13.87722 -13.78986 -13.46021 -13.26198 -13.19211 -13.08281 -12.93737 -12.78170 -12.37814 -12.28461 -12.04748 -11.91384 -11.79266 -10.98066 -10.79278 -10.64727 -10.55729 -10.05905 -9.73261 -8.45597 -8.43307 -6.20058 0.53267 1.13457 1.35610 1.35809 1.42045 1.60013 1.79500 2.10972 2.24293 2.42263 2.80117 2.98981 3.11889 3.45090 3.77975 3.87395 3.93706 4.08093 4.15943 4.36793 4.48586 4.62626 4.65889 4.70702 4.76087 4.80862 4.88636 5.05039 5.14717 5.19143 5.21072 5.33626 5.44569 5.54683 5.91400 6.00361 6.37127 6.54213 6.77816 6.86516 7.47662 7.52711 7.73233 8.55818 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.053138 B = 0.002781 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.801181 B =10064.389029 C =10428.602824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 C -0.165 4.165 4 N -0.351 5.351 5 C 0.132 3.868 6 C -0.305 4.305 7 C 0.580 3.420 8 O -0.588 6.588 9 N -0.612 5.612 10 C -0.040 4.040 11 C -0.060 4.060 12 N -0.311 5.311 13 N -0.170 5.170 14 C -0.354 4.354 15 H 0.141 0.859 16 C -0.008 4.008 17 N -0.826 5.826 18 Si 1.019 2.981 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.242 1.242 22 C -0.080 4.080 23 C 0.085 3.915 24 N -0.317 5.317 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.197 0.803 33 H 0.418 0.582 34 H 0.168 0.832 35 H 0.276 0.724 36 H 0.189 0.811 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -1.800 -21.636 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.130 5.130 5 C -0.021 4.021 6 C -0.320 4.320 7 C 0.369 3.631 8 O -0.470 6.470 9 N -0.256 5.256 10 C -0.146 4.146 11 C -0.236 4.236 12 N -0.143 5.143 13 N 0.061 4.939 14 C -0.485 4.485 15 H 0.158 0.842 16 C -0.219 4.219 17 N -0.454 5.454 18 Si 0.838 3.162 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.165 1.165 22 C -0.230 4.230 23 C -0.102 4.102 24 N -0.137 5.137 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.214 0.786 33 H 0.255 0.745 34 H 0.185 0.815 35 H 0.085 0.915 36 H 0.206 0.794 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.412 -0.809 -21.313 22.005 hybrid contribution 0.300 -0.360 0.666 0.815 sum -5.112 -1.169 -20.647 21.303 Atomic orbital electron populations 1.22243 0.92298 1.02933 1.04456 1.21781 0.95831 0.93671 0.84379 1.22262 1.02034 0.92692 1.05304 1.49089 1.47957 1.06993 1.08940 1.23045 0.94462 0.99927 0.84691 1.20048 1.21511 0.96465 0.93991 1.17636 0.76687 0.83121 0.85614 1.90633 1.56347 1.28145 1.71851 1.42162 1.63718 1.13179 1.06568 1.17329 1.17120 0.94373 0.85799 1.24180 1.08029 0.99572 0.91789 1.78127 1.23138 0.94804 1.18242 1.44832 1.36444 1.05866 1.06781 1.20608 1.44958 0.94863 0.88066 0.84184 1.26887 0.96144 0.96116 1.02739 1.70406 1.37220 1.09344 1.28425 0.84576 0.77893 0.79124 0.74580 1.19222 1.20202 1.16522 1.22003 1.15059 0.99941 0.86007 1.24467 0.96594 0.99362 0.89771 1.77097 1.21838 0.93856 1.20870 0.87514 0.92210 0.92819 0.86793 0.87085 0.91265 0.92096 0.78622 0.74523 0.81523 0.91458 0.79371 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.52 71.98 0.69 -0.94 16 2 C 0.14 1.75 3.91 44.99 0.18 1.92 16 3 C -0.16 -1.42 8.82 71.98 0.64 -0.79 16 4 N -0.35 -7.09 3.50 -325.74 -1.14 -8.23 16 5 C 0.13 3.13 10.39 84.27 0.88 4.00 16 6 C -0.31 -8.57 6.13 -20.15 -0.12 -8.70 16 7 C 0.58 21.56 7.78 86.66 0.67 22.24 16 8 O -0.59 -26.85 14.05 -4.11 -0.06 -26.91 16 9 N -0.61 -22.19 5.46 -306.85 -1.67 -23.86 16 10 C -0.04 -1.90 6.90 37.74 0.26 -1.63 16 11 C -0.06 -3.39 10.85 85.42 0.93 -2.46 16 12 N -0.31 -19.20 10.42 -56.46 -0.59 -19.79 16 13 N -0.17 -9.62 3.74 -190.01 -0.71 -10.33 16 14 C -0.35 -19.03 10.24 84.01 0.86 -18.17 16 15 H 0.14 6.51 7.84 -2.91 -0.02 6.49 16 16 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 17 N -0.83 -48.49 11.84 21.66 0.26 -48.24 16 18 Si 1.02 39.17 29.56 68.60 2.03 41.20 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.24 -8.36 7.11 99.48 0.71 -7.66 16 22 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 23 C 0.09 1.94 11.50 85.65 0.99 2.93 16 24 N -0.32 -7.41 12.50 -56.27 -0.70 -8.11 16 25 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.64 7.13 -2.39 -0.02 0.62 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.20 4.05 7.23 -2.91 -0.02 4.03 16 33 H 0.42 11.07 7.78 -92.71 -0.72 10.35 16 34 H 0.17 9.47 5.91 -2.91 -0.02 9.45 16 35 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 37 H 0.22 3.33 7.50 -2.91 -0.02 3.30 16 Total: -1.00 -81.27 324.02 5.18 -76.09 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.39 Total: 32.52 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.38 Total: -4.34 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -4.56 Total: -118.56 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.91 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -81.27 5.18 -76.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786850327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.546 kcal (2) G-P(sol) polarization free energy of solvation -81.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds