Wall clock time and date at job start Tue Mar 31 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46790 * 92.64087 * 3 2 1 5 5 C 1.37098 * 120.00072 * 95.54683 * 4 3 2 6 6 H 1.08000 * 120.00068 * 162.57069 * 5 4 3 7 7 C 1.38949 * 120.00087 * 342.57291 * 5 4 3 8 8 N 1.31412 * 120.00030 * 342.90802 * 7 5 4 9 9 Si 1.86798 * 120.00298 * 162.91024 * 7 5 4 10 10 H 1.48500 * 109.47001 * 89.99530 * 9 7 5 11 11 H 1.48491 * 109.47386 * 209.99801 * 9 7 5 12 12 H 1.48506 * 109.46995 * 329.99946 * 9 7 5 13 13 C 1.34780 * 119.99560 * 275.54426 * 4 3 2 14 14 O 1.21292 * 119.99200 * 185.25117 * 13 4 3 15 15 C 1.50691 * 120.00056 * 5.25277 * 13 4 3 16 16 H 1.08997 * 109.47879 * 24.83504 * 15 13 4 17 17 C 1.53010 * 109.47027 * 144.83365 * 15 13 4 18 18 C 1.53004 * 109.47166 * 264.83052 * 15 13 4 19 19 C 1.50700 * 109.47046 * 175.00285 * 18 15 13 20 20 C 1.38249 * 119.97642 * 269.72956 * 19 18 15 21 21 C 1.38190 * 120.02817 * 179.72762 * 20 19 18 22 22 C 1.38467 * 119.97087 * 0.56595 * 21 20 19 23 23 F 1.35103 * 120.02253 * 179.68034 * 22 21 20 24 24 C 1.38456 * 119.94845 * 359.70653 * 22 21 20 25 25 C 1.38192 * 119.97567 * 0.02562 * 24 22 21 26 26 H 4.40640 * 5.51418 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47063 * 332.64029 * 3 2 1 28 28 H 1.08999 * 109.46808 * 212.63739 * 3 2 1 29 29 H 0.96995 * 120.00477 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46691 * 64.29364 * 17 15 13 31 31 H 1.09000 * 109.47134 * 184.29236 * 17 15 13 32 32 H 1.08992 * 109.46759 * 304.29678 * 17 15 13 33 33 H 1.08998 * 109.46863 * 295.00191 * 18 15 13 34 34 H 1.08994 * 109.47066 * 55.00304 * 18 15 13 35 35 H 1.08001 * 119.97854 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.01632 * 180.29265 * 21 20 19 37 37 H 1.07997 * 120.01027 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.98905 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0645 -1.3798 5 6 3.4704 1.2732 -1.9328 6 1 4.0827 1.3087 -2.8217 7 6 3.0232 2.4524 -1.3496 8 7 2.0265 2.4253 -0.4936 9 14 3.8387 4.0763 -1.7825 10 1 3.1470 4.6822 -2.9485 11 1 3.7524 4.9984 -0.6218 12 1 5.2649 3.8391 -2.1214 13 6 3.2530 -1.0650 -2.1055 14 8 3.7460 -1.0251 -3.2130 15 6 2.7733 -2.3772 -1.5410 16 1 2.0012 -2.1912 -0.7945 17 6 2.1966 -3.2369 -2.6677 18 6 3.9467 -3.1114 -0.8890 19 6 3.4451 -4.3641 -0.2180 20 6 3.0419 -4.3256 1.1038 21 6 2.5764 -5.4724 1.7185 22 6 2.5251 -6.6630 1.0134 23 9 2.0763 -7.7862 1.6153 24 6 2.9345 -6.7016 -0.3087 25 6 3.3943 -5.5522 -0.9229 26 1 -1.0500 0.0002 0.0001 27 1 3.0097 -0.9119 0.4723 28 1 3.0089 0.8662 0.5542 29 1 1.7146 3.2484 -0.0861 30 1 2.9873 -3.4867 -3.3752 31 1 1.7807 -4.1533 -2.2491 32 1 1.4111 -2.6829 -3.1816 33 1 4.6787 -3.3761 -1.6519 34 1 4.4133 -2.4636 -0.1469 35 1 3.0869 -3.3979 1.6550 36 1 2.2571 -5.4411 2.7497 37 1 2.8952 -7.6297 -0.8594 38 1 3.7141 -5.5822 -1.9540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798805169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:32 Heat of formation + Delta-G solvation = 1.812922 kcal Electronic energy + Delta-G solvation = -22563.132493 eV Core-core repulsion = 19093.906320 eV Total energy + Delta-G solvation = -3469.226173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.92563 -39.63402 -38.56878 -35.36054 -34.31752 -32.05590 -31.21975 -31.17421 -30.21893 -26.67488 -26.28144 -24.99989 -23.14828 -22.57471 -21.00453 -18.51285 -17.87220 -17.67352 -16.82798 -16.46032 -16.17957 -15.62472 -15.52988 -14.65823 -14.47721 -14.13470 -13.86384 -13.82036 -13.52002 -13.28312 -12.88465 -12.64053 -12.29993 -12.26478 -11.85029 -11.66093 -11.52763 -11.17470 -11.07057 -11.02107 -10.68658 -10.54506 -10.50382 -10.31344 -9.37220 -9.30560 -9.13625 -8.88586 -8.59599 -8.30206 -7.86940 -6.33291 -3.88538 1.11138 1.19610 3.13684 3.23861 3.29140 3.51866 3.68385 3.89541 4.04482 4.16449 4.22558 4.67365 4.71996 4.83373 5.03337 5.05187 5.18263 5.26140 5.40012 5.46377 5.55334 5.64622 5.83044 5.94992 6.00440 6.04275 6.07647 6.12142 6.20698 6.27227 6.35711 6.53900 6.57652 6.70081 6.78322 6.87429 7.03185 7.54203 8.03837 8.41474 8.79560 9.12259 9.34790 9.89753 10.66750 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004083 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.499711 B = 6856.100925 C = 7330.453792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.110 4.110 3 C 0.232 3.768 4 N -0.441 5.441 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.869 5.869 9 Si 0.923 3.077 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.457 3.543 14 O -0.583 6.583 15 C -0.100 4.100 16 H 0.084 0.916 17 C -0.128 4.128 18 C -0.071 4.071 19 C -0.077 4.077 20 C -0.088 4.088 21 C -0.151 4.151 22 C 0.084 3.916 23 F -0.146 7.146 24 C -0.153 4.153 25 C -0.086 4.086 26 H 0.198 0.802 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.268 0.732 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -12.986 5.668 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.112 4.112 3 C 0.109 3.891 4 N -0.159 5.159 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.507 5.507 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.466 6.466 15 C -0.122 4.122 16 H 0.102 0.898 17 C -0.186 4.186 18 C -0.109 4.109 19 C -0.077 4.077 20 C -0.106 4.106 21 C -0.170 4.170 22 C 0.065 3.935 23 F -0.124 7.124 24 C -0.172 4.172 25 C -0.104 4.104 26 H 0.215 0.785 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.611 -12.823 5.254 13.872 hybrid contribution -0.324 0.821 0.093 0.888 sum 0.287 -12.003 5.348 13.143 Atomic orbital electron populations 1.24277 0.95394 1.06530 1.02093 1.23197 0.94370 0.95255 0.98385 1.18357 0.84195 1.01062 0.85486 1.43733 1.55987 1.06154 1.10053 1.19688 1.30211 0.81383 1.12713 0.87853 1.25286 0.95302 0.99570 0.97215 1.70034 1.22490 1.28450 1.29764 0.85988 0.79879 0.81248 0.77954 1.20458 1.20845 1.19414 1.20015 0.84445 0.85114 0.85857 1.90508 1.48699 1.86524 1.20917 1.21220 0.97717 0.94382 0.98868 0.89769 1.21612 1.01021 0.98371 0.97579 1.20607 0.97565 0.92922 0.99802 1.20048 0.98406 0.95404 0.93841 1.21002 0.97199 0.97912 0.94447 1.21116 1.03119 0.91788 1.00944 1.17716 1.01042 0.82705 0.92061 1.91476 1.87082 1.50218 1.83666 1.21107 1.02523 1.00080 0.93514 1.20994 0.98124 0.91201 1.00085 0.78469 0.92362 0.86782 0.92137 0.91953 0.92825 0.92730 0.90050 0.90462 0.84804 0.84933 0.85023 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.37 19.25 29.55 0.57 -4.80 16 2 C -0.11 -2.41 10.35 -37.12 -0.38 -2.79 16 3 C 0.23 4.96 4.78 -6.83 -0.03 4.93 16 4 N -0.44 -10.79 2.60 -117.93 -0.31 -11.10 16 5 C -0.31 -8.42 9.38 -14.93 -0.14 -8.56 16 6 H 0.10 2.94 7.33 -52.49 -0.38 2.55 16 7 C 0.03 0.76 4.99 -17.47 -0.09 0.67 16 8 N -0.87 -22.31 9.21 55.50 0.51 -21.80 16 9 Si 0.92 20.21 29.59 -169.99 -5.03 15.18 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.46 10.65 6.56 -10.99 -0.07 10.58 16 14 O -0.58 -15.57 16.00 5.55 0.09 -15.48 16 15 C -0.10 -1.77 1.89 -91.77 -0.17 -1.95 16 16 H 0.08 1.50 5.73 -51.93 -0.30 1.20 16 17 C -0.13 -2.10 8.22 37.16 0.31 -1.79 16 18 C -0.07 -1.03 4.67 -27.88 -0.13 -1.16 16 19 C -0.08 -0.96 4.71 -104.61 -0.49 -1.45 16 20 C -0.09 -1.02 9.70 -39.59 -0.38 -1.41 16 21 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 22 C 0.08 0.99 7.30 -39.42 -0.29 0.70 16 23 F -0.15 -1.79 17.27 2.25 0.04 -1.75 16 24 C -0.15 -1.69 10.03 -39.52 -0.40 -2.08 16 25 C -0.09 -0.98 8.07 -39.60 -0.32 -1.30 16 26 H 0.20 3.29 7.80 -54.09 -0.42 2.87 16 27 H 0.06 1.02 6.22 -51.93 -0.32 0.70 16 28 H 0.11 2.59 6.31 -51.93 -0.33 2.27 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 31 H 0.05 0.74 6.55 -51.93 -0.34 0.40 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.35 8.04 -52.49 -0.42 0.93 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -30.32 327.99 -6.74 -37.06 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.56 Total: 5.45 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.42 Total: -12.51 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.20 Total: -32.90 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.32 -6.74 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.874 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds