Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46790 * 92.64087 * 3 2 1 5 5 C 1.37098 * 120.00072 * 95.54683 * 4 3 2 6 6 H 1.08000 * 120.00068 * 162.57069 * 5 4 3 7 7 C 1.38949 * 120.00087 * 342.57291 * 5 4 3 8 8 N 1.31412 * 120.00030 * 342.90802 * 7 5 4 9 9 Si 1.86798 * 120.00298 * 162.91024 * 7 5 4 10 10 H 1.48500 * 109.47001 * 89.99530 * 9 7 5 11 11 H 1.48491 * 109.47386 * 209.99801 * 9 7 5 12 12 H 1.48506 * 109.46995 * 329.99946 * 9 7 5 13 13 C 1.34780 * 119.99560 * 275.54426 * 4 3 2 14 14 O 1.21292 * 119.99200 * 185.25117 * 13 4 3 15 15 C 1.50691 * 120.00056 * 5.25277 * 13 4 3 16 16 H 1.08997 * 109.47879 * 24.83504 * 15 13 4 17 17 C 1.53010 * 109.47027 * 144.83365 * 15 13 4 18 18 C 1.53004 * 109.47166 * 264.83052 * 15 13 4 19 19 C 1.50700 * 109.47046 * 175.00285 * 18 15 13 20 20 C 1.38249 * 119.97642 * 269.72956 * 19 18 15 21 21 C 1.38190 * 120.02817 * 179.72762 * 20 19 18 22 22 C 1.38467 * 119.97087 * 0.56595 * 21 20 19 23 23 F 1.35103 * 120.02253 * 179.68034 * 22 21 20 24 24 C 1.38456 * 119.94845 * 359.70653 * 22 21 20 25 25 C 1.38192 * 119.97567 * 0.02562 * 24 22 21 26 26 H 4.40640 * 5.51418 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47063 * 332.64029 * 3 2 1 28 28 H 1.08999 * 109.46808 * 212.63739 * 3 2 1 29 29 H 0.96995 * 120.00477 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46691 * 64.29364 * 17 15 13 31 31 H 1.09000 * 109.47134 * 184.29236 * 17 15 13 32 32 H 1.08992 * 109.46759 * 304.29678 * 17 15 13 33 33 H 1.08998 * 109.46863 * 295.00191 * 18 15 13 34 34 H 1.08994 * 109.47066 * 55.00304 * 18 15 13 35 35 H 1.08001 * 119.97854 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.01632 * 180.29265 * 21 20 19 37 37 H 1.07997 * 120.01027 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.98905 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0645 -1.3798 5 6 3.4704 1.2732 -1.9328 6 1 4.0827 1.3087 -2.8217 7 6 3.0232 2.4524 -1.3496 8 7 2.0265 2.4253 -0.4936 9 14 3.8387 4.0763 -1.7825 10 1 3.1470 4.6822 -2.9485 11 1 3.7524 4.9984 -0.6218 12 1 5.2649 3.8391 -2.1214 13 6 3.2530 -1.0650 -2.1055 14 8 3.7460 -1.0251 -3.2130 15 6 2.7733 -2.3772 -1.5410 16 1 2.0012 -2.1912 -0.7945 17 6 2.1966 -3.2369 -2.6677 18 6 3.9467 -3.1114 -0.8890 19 6 3.4451 -4.3641 -0.2180 20 6 3.0419 -4.3256 1.1038 21 6 2.5764 -5.4724 1.7185 22 6 2.5251 -6.6630 1.0134 23 9 2.0763 -7.7862 1.6153 24 6 2.9345 -6.7016 -0.3087 25 6 3.3943 -5.5522 -0.9229 26 1 -1.0500 0.0002 0.0001 27 1 3.0097 -0.9119 0.4723 28 1 3.0089 0.8662 0.5542 29 1 1.7146 3.2484 -0.0861 30 1 2.9873 -3.4867 -3.3752 31 1 1.7807 -4.1533 -2.2491 32 1 1.4111 -2.6829 -3.1816 33 1 4.6787 -3.3761 -1.6519 34 1 4.4133 -2.4636 -0.1469 35 1 3.0869 -3.3979 1.6550 36 1 2.2571 -5.4411 2.7497 37 1 2.8952 -7.6297 -0.8594 38 1 3.7141 -5.5822 -1.9540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -13.135085 kcal Electronic energy + Delta-G solvation = -22563.780687 eV Core-core repulsion = 19093.906320 eV Total energy + Delta-G solvation = -3469.874367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.83458 -41.01030 -39.89010 -37.16527 -35.71817 -33.86250 -32.98446 -32.05802 -31.34849 -28.37349 -27.55826 -26.73794 -24.25827 -23.76447 -22.12147 -20.14632 -19.65422 -18.59885 -18.48616 -18.05223 -17.25535 -16.75596 -16.54552 -16.32595 -16.07372 -15.65512 -15.16743 -14.97617 -14.58591 -14.38177 -14.35329 -14.01763 -14.00736 -13.67353 -13.36902 -13.02264 -12.81985 -12.79964 -12.48440 -12.41666 -12.16483 -12.05747 -11.89766 -11.76065 -11.19999 -11.02235 -10.60065 -10.24253 -9.98174 -9.79341 -9.44475 -8.28289 -5.91382 0.19300 0.34664 1.37035 1.43312 1.54974 1.92459 2.14994 2.34162 2.40967 2.66440 3.08575 3.19407 3.35636 3.74146 3.81613 3.91028 4.03185 4.04141 4.20227 4.21372 4.41222 4.42910 4.54581 4.69368 4.81040 4.88623 4.93845 5.04328 5.06630 5.11020 5.22296 5.23942 5.32195 5.34782 5.45974 5.48565 5.67121 5.99270 6.08976 6.47937 7.16170 7.17939 7.46229 8.02493 8.69025 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004083 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.499711 B = 6856.100925 C = 7330.453792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.149 4.149 3 C 0.235 3.765 4 N -0.454 5.454 5 C -0.350 4.350 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.876 5.876 9 Si 0.982 3.018 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.271 1.271 13 C 0.448 3.552 14 O -0.628 6.628 15 C -0.088 4.088 16 H 0.087 0.913 17 C -0.123 4.123 18 C -0.062 4.062 19 C -0.086 4.086 20 C -0.091 4.091 21 C -0.152 4.152 22 C 0.073 3.927 23 F -0.150 7.150 24 C -0.152 4.152 25 C -0.087 4.087 26 H 0.230 0.770 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -13.895 6.872 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.150 4.150 3 C 0.113 3.887 4 N -0.171 5.171 5 C -0.478 4.478 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.514 5.514 9 Si 0.806 3.194 10 H -0.208 1.208 11 H -0.193 1.193 12 H -0.196 1.196 13 C 0.238 3.762 14 O -0.515 6.515 15 C -0.110 4.110 16 H 0.105 0.895 17 C -0.180 4.180 18 C -0.100 4.100 19 C -0.086 4.086 20 C -0.109 4.109 21 C -0.170 4.170 22 C 0.054 3.946 23 F -0.129 7.129 24 C -0.170 4.170 25 C -0.105 4.105 26 H 0.247 0.753 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.085 -13.743 6.496 15.201 hybrid contribution -0.162 1.071 -0.272 1.117 sum -0.247 -12.671 6.223 14.119 Atomic orbital electron populations 1.25119 0.96361 1.05029 1.00424 1.23461 0.94987 0.96677 0.99887 1.18383 0.84486 1.02001 0.83817 1.43929 1.56069 1.05800 1.11320 1.19595 1.31700 0.83390 1.13097 0.90747 1.25918 0.95393 1.01826 0.96871 1.70131 1.22446 1.29222 1.29592 0.85109 0.78694 0.77668 0.77883 1.20793 1.19297 1.19585 1.21008 0.83162 0.86675 0.85369 1.90465 1.50552 1.87494 1.22971 1.21142 0.98832 0.91741 0.99237 0.89460 1.21594 1.00319 0.99033 0.97081 1.20462 0.96123 0.93701 0.99681 1.19873 0.99649 0.94750 0.94343 1.21143 0.96908 0.98614 0.94217 1.21305 1.02597 0.91342 1.01778 1.17948 1.01258 0.82799 0.92564 1.91468 1.87169 1.50445 1.83778 1.21312 1.01648 1.00715 0.93334 1.21136 0.97818 0.90911 1.00662 0.75290 0.88797 0.88604 0.91864 0.92248 0.89735 0.94706 0.90356 0.90327 0.83764 0.83251 0.83065 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.72 19.25 74.32 1.43 -8.29 16 2 C -0.15 -6.34 10.35 31.12 0.32 -6.02 16 3 C 0.24 10.03 4.78 84.57 0.40 10.44 16 4 N -0.45 -22.67 2.60 -645.41 -1.68 -24.35 16 5 C -0.35 -19.49 9.38 84.04 0.79 -18.70 16 6 H 0.07 4.47 7.33 -2.91 -0.02 4.45 16 7 C 0.00 0.14 4.99 84.93 0.42 0.56 16 8 N -0.88 -44.83 9.21 21.66 0.20 -44.63 16 9 Si 0.98 41.72 29.59 68.60 2.03 43.75 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 C 0.45 21.31 6.56 87.65 0.57 21.89 16 14 O -0.63 -34.85 16.00 -3.07 -0.05 -34.90 16 15 C -0.09 -3.06 1.89 -11.54 -0.02 -3.08 16 16 H 0.09 2.99 5.73 -2.39 -0.01 2.98 16 17 C -0.12 -3.92 8.22 71.99 0.59 -3.32 16 18 C -0.06 -1.73 4.67 29.85 0.14 -1.59 16 19 C -0.09 -1.97 4.71 -19.86 -0.09 -2.06 16 20 C -0.09 -1.91 9.70 22.26 0.22 -1.69 16 21 C -0.15 -3.01 10.03 22.31 0.22 -2.79 16 22 C 0.07 1.55 7.30 22.38 0.16 1.72 16 23 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 24 C -0.15 -2.91 10.03 22.31 0.22 -2.69 16 25 C -0.09 -1.78 8.07 22.26 0.18 -1.60 16 26 H 0.23 6.94 7.80 -4.42 -0.03 6.91 16 27 H 0.09 3.21 6.22 -2.39 -0.01 3.19 16 28 H 0.10 4.40 6.31 -2.39 -0.02 4.38 16 29 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 30 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 31 H 0.08 2.15 6.55 -2.39 -0.02 2.13 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 34 H 0.08 2.15 7.39 -2.39 -0.02 2.13 16 35 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 2.58 8.04 -2.91 -0.02 2.55 16 Total: -1.00 -66.33 327.99 7.91 -58.42 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 1.07 Total: 21.51 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 5.57 Total: -17.23 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.48 Total: -68.98 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.05 Total: -34.90 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -66.33 7.91 -58.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.287 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds