Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47584 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00181 * 2 1 3 5 5 C 1.35852 * 126.18418 * 299.99536 * 4 2 1 6 6 N 1.30164 * 109.03595 * 179.74549 * 5 4 2 7 7 C 1.35733 * 108.98878 * 0.41342 * 6 5 4 8 8 C 1.47315 * 126.22005 * 179.85984 * 7 6 5 9 9 O 1.21650 * 119.99834 * 179.68788 * 8 7 6 10 10 N 1.34773 * 119.99769 * 359.67963 * 8 7 6 11 11 C 1.40558 * 119.99826 * 180.02562 * 10 8 7 12 12 C 1.40663 * 126.08402 * 0.02562 * 11 10 8 13 13 N 1.30901 * 108.38684 * 179.73843 * 12 11 10 14 14 N 1.40071 * 108.41238 * 0.40998 * 13 12 11 15 15 C 1.37314 * 126.07199 * 179.85070 * 14 13 12 16 16 H 1.07998 * 120.00425 * 185.44900 * 15 14 13 17 17 C 1.38989 * 119.99795 * 5.17680 * 15 14 13 18 18 N 1.31295 * 120.00227 * 354.31110 * 17 15 14 19 19 Si 1.86794 * 119.99993 * 174.31087 * 17 15 14 20 20 H 1.48498 * 109.47527 * 94.97968 * 19 17 15 21 21 H 1.48507 * 109.47412 * 214.98035 * 19 17 15 22 22 H 1.48504 * 109.47189 * 334.98217 * 19 17 15 23 23 C 1.35681 * 126.08406 * 180.02562 * 11 10 8 24 24 C 1.35932 * 126.18300 * 119.99641 * 4 2 1 25 25 H 1.08995 * 109.47689 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46875 * 300.00029 * 1 2 3 27 27 H 1.09000 * 109.46894 * 59.99607 * 1 2 3 28 28 H 1.09004 * 109.46875 * 239.99971 * 2 1 3 29 29 H 1.08997 * 109.47658 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47326 * 300.00129 * 3 2 1 31 31 H 1.09004 * 109.47039 * 60.00071 * 3 2 1 32 32 H 1.08003 * 125.47939 * 0.02562 * 5 4 2 33 33 H 0.96995 * 120.00387 * 0.02562 * 10 8 7 34 34 H 1.08001 * 125.80402 * 359.97438 * 12 11 10 35 35 H 0.96997 * 120.00133 * 179.97438 * 18 17 15 36 36 H 1.08009 * 126.24737 * 0.02562 * 23 11 10 37 37 H 1.08000 * 126.61000 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7688 -0.3378 2.4841 6 7 2.3598 -1.1831 3.2781 7 6 3.0183 -2.1050 2.5305 8 6 3.8152 -3.2330 3.0429 9 8 4.3557 -3.9981 2.2667 10 7 3.9456 -3.4172 4.3716 11 6 4.7064 -4.4932 4.8606 12 6 5.3835 -5.4501 4.0830 13 7 5.9830 -6.2885 4.8899 14 7 5.7062 -5.9076 6.2091 15 6 6.1529 -6.5392 7.3436 16 1 5.8080 -6.2141 8.3140 17 6 7.0445 -7.6006 7.2428 18 7 7.3733 -8.0719 6.0623 19 14 7.7752 -8.3565 8.7868 20 1 6.9676 -9.5353 9.1908 21 1 9.1718 -8.7826 8.5162 22 1 7.7671 -7.3525 9.8810 23 6 4.9184 -4.7937 6.1666 24 6 2.8029 -1.8005 1.2180 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.1720 0.5057 2.7986 33 1 3.5144 -2.8074 4.9905 34 1 5.4079 -5.4846 3.0038 35 1 7.9959 -8.8124 5.9919 36 1 4.5336 -4.2509 7.0174 37 1 3.1824 -2.3379 0.3615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798939594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = 107.806107 kcal Electronic energy + Delta-G solvation = -21656.182125 eV Core-core repulsion = 18243.764875 eV Total energy + Delta-G solvation = -3412.417251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20975 -39.65314 -38.18990 -36.25215 -34.03714 -33.01051 -31.25293 -30.19605 -29.57440 -27.86768 -27.56891 -24.93769 -23.38972 -23.01325 -20.79078 -20.59644 -19.71562 -19.11530 -17.62627 -17.20644 -16.16038 -15.65415 -15.35431 -15.12084 -14.91953 -14.34070 -14.25264 -13.95366 -13.82299 -13.40934 -13.25611 -12.96647 -12.83381 -12.76640 -12.60280 -11.93569 -11.74646 -11.60154 -11.29865 -11.19201 -10.86265 -10.46434 -10.21988 -10.00818 -9.82293 -9.19780 -9.04892 -8.69541 -8.59890 -7.93917 -6.53745 -6.47126 -4.12028 1.70442 2.43905 2.50305 3.02760 3.11284 3.16493 3.59255 3.79981 3.98698 4.01987 4.07128 4.35200 4.44678 4.48051 4.62070 4.62643 4.93168 4.94648 5.08485 5.10658 5.13639 5.23048 5.35885 5.46085 5.57875 5.63547 6.01377 6.38429 6.45265 6.62829 6.93929 7.04471 7.11295 7.27583 7.37096 7.80946 7.97415 8.35428 8.47910 8.75371 9.05870 9.49399 9.78606 10.49396 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.060311 B = 0.002706 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.146645 B =10345.999629 C =10620.326072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.457 5.457 5 C 0.184 3.816 6 N -0.466 5.466 7 C -0.044 4.044 8 C 0.584 3.416 9 O -0.543 6.543 10 N -0.608 5.608 11 C -0.055 4.055 12 C -0.034 4.034 13 N -0.261 5.261 14 N -0.145 5.145 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.771 5.771 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.081 4.081 24 C 0.026 3.974 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.205 0.795 33 H 0.405 0.595 34 H 0.177 0.823 35 H 0.274 0.726 36 H 0.146 0.854 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 17.752 -10.107 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.141 5.141 5 C -0.100 4.100 6 N -0.185 5.185 7 C -0.174 4.174 8 C 0.370 3.630 9 O -0.422 6.422 10 N -0.249 5.249 11 C -0.161 4.161 12 C -0.209 4.209 13 N -0.092 5.092 14 N 0.087 4.913 15 C -0.455 4.455 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.398 5.398 19 Si 0.757 3.243 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.232 4.232 24 C -0.112 4.112 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.221 0.779 33 H 0.239 0.761 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.322 16.052 -9.909 22.001 hybrid contribution -0.548 0.874 0.104 1.037 sum -11.870 16.926 -9.805 22.880 Atomic orbital electron populations 1.22189 0.92986 1.03511 1.03469 1.21525 0.95622 0.94116 0.86392 1.22187 1.02445 0.94055 1.03471 1.45742 1.38211 1.22132 1.08012 1.24938 1.04189 1.02005 0.78836 1.70599 1.11005 1.04143 1.32791 1.20695 1.06342 0.99843 0.90477 1.16725 0.80816 0.83222 0.82233 1.90680 1.48923 1.45838 1.56717 1.42301 1.48766 1.27666 1.06173 1.17306 1.09960 0.96845 0.92009 1.24123 1.01345 0.95289 1.00172 1.78217 1.23723 1.21739 0.85555 1.44526 1.27111 1.14380 1.05289 1.19849 1.26738 1.15063 0.83866 0.86679 1.25632 0.96481 0.96490 0.98478 1.70230 1.26426 1.20260 1.22901 0.85836 0.78619 0.79448 0.80370 1.19737 1.20114 1.18780 1.21284 1.08943 0.97230 0.95746 1.22699 0.98000 0.90722 0.99756 0.91497 0.91479 0.90338 0.87912 0.91494 0.90338 0.91477 0.77876 0.76120 0.80659 0.91588 0.83629 0.79642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.24 37.16 0.34 -0.34 16 2 C 0.13 0.68 3.57 -67.93 -0.24 0.44 16 3 C -0.16 -0.68 9.24 37.15 0.34 -0.34 16 4 N -0.46 -4.29 2.60 -111.08 -0.29 -4.57 16 5 C 0.18 1.90 11.53 -89.91 -1.04 0.87 16 6 N -0.47 -6.79 10.99 -11.04 -0.12 -6.92 16 7 C -0.04 -0.72 6.98 -83.10 -0.58 -1.30 16 8 C 0.58 11.96 7.78 -12.57 -0.10 11.86 16 9 O -0.54 -12.59 14.03 5.23 0.07 -12.52 16 10 N -0.61 -12.74 5.46 -11.00 -0.06 -12.80 16 11 C -0.06 -1.39 6.90 -83.85 -0.58 -1.97 16 12 C -0.03 -0.93 10.85 -17.03 -0.18 -1.12 16 13 N -0.26 -7.92 10.41 30.80 0.32 -7.60 16 14 N -0.15 -4.17 3.74 -11.41 -0.04 -4.21 16 15 C -0.32 -8.88 10.24 -14.82 -0.15 -9.03 16 16 H 0.12 2.84 7.84 -52.49 -0.41 2.42 16 17 C 0.05 1.23 5.50 -17.50 -0.10 1.13 16 18 N -0.77 -22.22 11.83 55.50 0.66 -21.56 16 19 Si 0.93 19.54 29.55 -169.99 -5.02 14.52 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.08 -2.05 11.49 -16.39 -0.19 -2.24 16 24 C 0.03 0.33 11.25 -16.38 -0.18 0.14 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.26 7.94 -51.93 -0.41 -0.15 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.10 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.26 7.94 -51.93 -0.41 -0.15 16 32 H 0.20 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.40 7.40 8.54 -40.82 -0.35 7.05 16 34 H 0.18 4.81 5.91 -52.49 -0.31 4.49 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.15 3.11 8.06 -52.48 -0.42 2.69 16 37 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -36.21 325.82 -6.64 -42.85 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.41 Total: 9.80 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.65 Total: -1.89 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.46 Total: -57.67 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.21 -6.64 -42.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798939594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.651 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds