Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47584 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00181 * 2 1 3 5 5 C 1.35852 * 126.18418 * 299.99536 * 4 2 1 6 6 N 1.30164 * 109.03595 * 179.74549 * 5 4 2 7 7 C 1.35733 * 108.98878 * 0.41342 * 6 5 4 8 8 C 1.47315 * 126.22005 * 179.85984 * 7 6 5 9 9 O 1.21650 * 119.99834 * 179.68788 * 8 7 6 10 10 N 1.34773 * 119.99769 * 359.67963 * 8 7 6 11 11 C 1.40558 * 119.99826 * 180.02562 * 10 8 7 12 12 C 1.40663 * 126.08402 * 0.02562 * 11 10 8 13 13 N 1.30901 * 108.38684 * 179.73843 * 12 11 10 14 14 N 1.40071 * 108.41238 * 0.40998 * 13 12 11 15 15 C 1.37314 * 126.07199 * 179.85070 * 14 13 12 16 16 H 1.07998 * 120.00425 * 185.44900 * 15 14 13 17 17 C 1.38989 * 119.99795 * 5.17680 * 15 14 13 18 18 N 1.31295 * 120.00227 * 354.31110 * 17 15 14 19 19 Si 1.86794 * 119.99993 * 174.31087 * 17 15 14 20 20 H 1.48498 * 109.47527 * 94.97968 * 19 17 15 21 21 H 1.48507 * 109.47412 * 214.98035 * 19 17 15 22 22 H 1.48504 * 109.47189 * 334.98217 * 19 17 15 23 23 C 1.35681 * 126.08406 * 180.02562 * 11 10 8 24 24 C 1.35932 * 126.18300 * 119.99641 * 4 2 1 25 25 H 1.08995 * 109.47689 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46875 * 300.00029 * 1 2 3 27 27 H 1.09000 * 109.46894 * 59.99607 * 1 2 3 28 28 H 1.09004 * 109.46875 * 239.99971 * 2 1 3 29 29 H 1.08997 * 109.47658 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47326 * 300.00129 * 3 2 1 31 31 H 1.09004 * 109.47039 * 60.00071 * 3 2 1 32 32 H 1.08003 * 125.47939 * 0.02562 * 5 4 2 33 33 H 0.96995 * 120.00387 * 0.02562 * 10 8 7 34 34 H 1.08001 * 125.80402 * 359.97438 * 12 11 10 35 35 H 0.96997 * 120.00133 * 179.97438 * 18 17 15 36 36 H 1.08009 * 126.24737 * 0.02562 * 23 11 10 37 37 H 1.08000 * 126.61000 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7688 -0.3378 2.4841 6 7 2.3598 -1.1831 3.2781 7 6 3.0183 -2.1050 2.5305 8 6 3.8152 -3.2330 3.0429 9 8 4.3557 -3.9981 2.2667 10 7 3.9456 -3.4172 4.3716 11 6 4.7064 -4.4932 4.8606 12 6 5.3835 -5.4501 4.0830 13 7 5.9830 -6.2885 4.8899 14 7 5.7062 -5.9076 6.2091 15 6 6.1529 -6.5392 7.3436 16 1 5.8080 -6.2141 8.3140 17 6 7.0445 -7.6006 7.2428 18 7 7.3733 -8.0719 6.0623 19 14 7.7752 -8.3565 8.7868 20 1 6.9676 -9.5353 9.1908 21 1 9.1718 -8.7826 8.5162 22 1 7.7671 -7.3525 9.8810 23 6 4.9184 -4.7937 6.1666 24 6 2.8029 -1.8005 1.2180 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.1720 0.5057 2.7986 33 1 3.5144 -2.8074 4.9905 34 1 5.4079 -5.4846 3.0038 35 1 7.9959 -8.8124 5.9919 36 1 4.5336 -4.2509 7.0174 37 1 3.1824 -2.3379 0.3615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798939594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = 83.231935 kcal Electronic energy + Delta-G solvation = -21657.247741 eV Core-core repulsion = 18243.764875 eV Total energy + Delta-G solvation = -3413.482867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.15088 -41.62207 -39.90867 -36.88956 -35.90424 -34.91982 -32.29772 -32.00627 -30.79819 -29.42101 -28.16521 -26.89087 -24.52510 -23.97323 -22.80089 -21.47474 -21.40495 -20.80306 -19.17080 -18.43337 -17.49509 -17.26244 -16.81350 -16.62589 -15.91710 -15.76719 -15.44528 -15.05215 -14.98249 -14.79085 -14.78057 -14.69061 -13.88358 -13.49692 -13.30071 -13.13881 -13.08343 -12.91649 -12.83444 -12.35727 -12.12675 -12.06501 -11.82764 -11.22203 -11.00457 -10.89939 -10.78986 -10.69674 -10.09370 -9.65714 -8.50121 -8.46576 -6.22848 0.55347 1.27266 1.40489 1.47553 1.59285 1.66634 1.79398 2.09912 2.26345 2.40598 2.78863 2.93213 3.09120 3.48203 3.62861 3.87309 3.97749 4.13500 4.20693 4.41343 4.50046 4.61129 4.68496 4.71283 4.86017 4.87973 5.01510 5.05528 5.11129 5.26556 5.28442 5.29817 5.46594 5.51064 5.96518 6.17061 6.32530 6.68053 6.73414 6.95716 7.39851 7.47028 7.67954 8.53435 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.060311 B = 0.002706 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.146645 B =10345.999629 C =10620.326072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 C -0.160 4.160 4 N -0.446 5.446 5 C 0.202 3.798 6 N -0.499 5.499 7 C -0.085 4.085 8 C 0.583 3.417 9 O -0.579 6.579 10 N -0.607 5.607 11 C -0.045 4.045 12 C -0.058 4.058 13 N -0.308 5.308 14 N -0.166 5.166 15 C -0.355 4.355 16 H 0.140 0.860 17 C -0.007 4.007 18 N -0.824 5.824 19 Si 1.022 2.978 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.244 1.244 23 C -0.082 4.082 24 C 0.042 3.958 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.418 0.582 34 H 0.170 0.830 35 H 0.277 0.723 36 H 0.185 0.815 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.206 20.272 -9.533 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 C -0.217 4.217 4 N -0.127 5.127 5 C -0.082 4.082 6 N -0.218 5.218 7 C -0.213 4.213 8 C 0.371 3.629 9 O -0.460 6.460 10 N -0.250 5.250 11 C -0.151 4.151 12 C -0.233 4.233 13 N -0.140 5.140 14 N 0.065 4.935 15 C -0.486 4.486 16 H 0.158 0.842 17 C -0.219 4.219 18 N -0.452 5.452 19 Si 0.840 3.160 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.167 1.167 23 C -0.232 4.232 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.263 0.737 33 H 0.254 0.746 34 H 0.187 0.813 35 H 0.087 0.913 36 H 0.202 0.798 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.045 18.641 -9.358 24.601 hybrid contribution -0.178 0.280 -0.244 0.412 sum -13.223 18.921 -9.602 25.001 Atomic orbital electron populations 1.22188 0.91553 1.03001 1.05003 1.21928 0.96639 0.94635 0.84918 1.22187 1.01473 0.93085 1.05005 1.46039 1.36615 1.20837 1.09247 1.25724 1.02376 1.01476 0.78627 1.70501 1.12302 1.04933 1.34094 1.20163 1.08815 1.00339 0.92010 1.17396 0.80170 0.83740 0.81576 1.90645 1.50427 1.47499 1.57396 1.42278 1.48745 1.26992 1.06946 1.17407 1.09011 0.96945 0.91738 1.24169 1.02605 0.96499 1.00063 1.78113 1.25506 1.23438 0.86952 1.44840 1.28117 1.15561 1.05027 1.20639 1.27540 1.15882 0.84494 0.84219 1.26931 0.96193 0.96425 1.02353 1.70407 1.27508 1.21236 1.26070 0.84552 0.77214 0.78659 0.75576 1.18843 1.20061 1.16688 1.21947 1.07796 0.96478 0.97025 1.22836 0.97146 0.91187 0.98746 0.92991 0.90763 0.88056 0.86989 0.92985 0.88057 0.90759 0.73653 0.74553 0.81303 0.91321 0.79756 0.78649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 9.24 71.98 0.67 -0.08 16 2 C 0.12 0.89 3.57 44.99 0.16 1.06 16 3 C -0.16 -0.75 9.24 71.98 0.67 -0.08 16 4 N -0.45 -7.23 2.60 -505.36 -1.32 -8.54 16 5 C 0.20 3.61 11.53 180.10 2.08 5.68 16 6 N -0.50 -13.87 10.99 -188.83 -2.08 -15.94 16 7 C -0.09 -2.77 6.98 40.51 0.28 -2.49 16 8 C 0.58 24.53 7.78 86.63 0.67 25.20 16 9 O -0.58 -28.09 14.03 -4.19 -0.06 -28.15 16 10 N -0.61 -25.88 5.46 -306.94 -1.68 -27.56 16 11 C -0.04 -2.31 6.90 37.74 0.26 -2.05 16 12 C -0.06 -3.42 10.85 85.42 0.93 -2.49 16 13 N -0.31 -19.58 10.41 -56.46 -0.59 -20.16 16 14 N -0.17 -9.80 3.74 -190.01 -0.71 -10.51 16 15 C -0.35 -19.65 10.24 84.01 0.86 -18.78 16 16 H 0.14 6.74 7.84 -2.91 -0.02 6.72 16 17 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 18 N -0.82 -49.13 11.83 21.66 0.26 -48.87 16 19 Si 1.02 39.92 29.55 68.60 2.03 41.94 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.24 -8.66 7.11 99.48 0.71 -7.96 16 23 C -0.08 -4.18 11.49 83.37 0.96 -3.22 16 24 C 0.04 1.02 11.25 83.64 0.94 1.96 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.27 7.94 -2.38 -0.02 0.25 16 27 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.11 0.68 8.07 -2.38 -0.02 0.66 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 0.27 7.94 -2.38 -0.02 0.25 16 32 H 0.25 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.42 15.28 8.54 -92.71 -0.79 14.49 16 34 H 0.17 9.91 5.91 -2.91 -0.02 9.90 16 35 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.19 7.62 8.06 -2.91 -0.02 7.59 16 37 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -83.87 325.82 5.11 -78.76 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.31 Total: 34.26 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 8.94 Total: 4.77 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -6.11 Total: -131.59 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -83.87 5.11 -78.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798939594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.993 kcal (2) G-P(sol) polarization free energy of solvation -83.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds