Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00271 * 359.97438 * 13 12 11 15 15 O 1.34234 * 119.99881 * 179.97438 * 13 12 11 16 16 C 1.45199 * 116.99947 * 179.97438 * 15 13 12 17 17 H 1.09007 * 110.26002 * 27.94967 * 16 15 13 18 18 C 1.54336 * 110.29283 * 149.99876 * 16 15 13 19 19 C 1.54368 * 102.38606 * 92.59831 * 18 16 15 20 20 C 1.51227 * 105.11843 * 26.29498 * 19 18 16 21 21 C 1.38744 * 130.69229 * 162.82541 * 20 19 18 22 22 C 1.38575 * 118.55592 * 180.02562 * 21 20 19 23 23 C 1.38230 * 118.99106 * 0.04016 * 22 21 20 24 24 N 1.31688 * 120.80118 * 359.97438 * 23 22 21 25 25 C 1.32299 * 122.02750 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 34 34 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 35 35 H 1.09003 * 110.82353 * 210.82136 * 18 16 15 36 36 H 1.08999 * 110.82757 * 334.17622 * 18 16 15 37 37 H 1.09001 * 110.31516 * 145.20740 * 19 18 16 38 38 H 1.09001 * 110.31588 * 267.38658 * 19 18 16 39 39 H 1.07998 * 120.72278 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.50889 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.60441 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5126 -7.4552 -0.0009 15 8 2.3921 -8.6176 -0.0029 16 6 1.6013 -9.8354 -0.0022 17 1 0.6375 -9.6598 -0.4804 18 6 2.3602 -10.9669 -0.7272 19 6 3.1041 -11.6627 0.4328 20 6 2.2687 -11.3822 1.6617 21 6 2.2579 -11.9936 2.9071 22 6 1.3737 -11.5268 3.8666 23 6 0.5365 -10.4734 3.5502 24 7 0.5739 -9.9171 2.3571 25 6 1.4041 -10.3332 1.4148 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.1010 -6.0919 -0.8918 34 1 3.1012 -6.0927 0.8881 35 1 1.6642 -11.6539 -1.2086 36 1 3.0636 -10.5587 -1.4530 37 1 3.1648 -12.7362 0.2535 38 1 4.1023 -11.2407 0.5494 39 1 2.9241 -12.8154 3.1241 40 1 1.3390 -11.9792 4.8467 41 1 -0.1568 -10.1020 4.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805927087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = -72.627668 kcal Electronic energy + Delta-G solvation = -21789.199676 eV Core-core repulsion = 18440.205822 eV Total energy + Delta-G solvation = -3348.993854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30147 -40.02022 -37.22549 -35.46946 -34.90316 -32.84418 -32.60789 -29.98733 -29.61816 -27.79510 -25.77166 -23.91164 -23.04815 -22.07689 -21.21393 -20.47652 -19.97483 -17.72193 -17.36234 -16.64066 -16.31819 -16.15185 -15.69761 -15.41132 -15.07572 -14.43278 -14.39695 -13.83871 -13.78296 -13.24347 -13.10596 -12.77524 -12.63122 -12.23117 -12.19184 -11.89045 -11.72280 -11.61000 -11.37794 -10.98159 -10.95745 -10.55789 -10.51477 -10.42467 -10.28316 -10.08005 -9.61219 -9.51460 -9.26863 -9.14846 -8.98730 -8.29111 -5.93923 -3.96402 0.67681 0.95329 2.38387 2.65215 3.35446 3.41365 3.44682 3.49770 3.60377 3.99478 4.32832 4.49464 4.50320 4.57555 4.64534 4.69290 4.87971 5.04980 5.17751 5.22345 5.31932 5.32785 5.36071 5.40292 5.41532 5.52570 5.60937 5.77533 5.81170 5.84662 6.10762 6.24583 6.34388 6.47230 6.52890 6.81409 6.99732 7.19945 7.73138 7.75280 7.90417 7.90673 8.07348 8.48972 9.11247 9.67193 11.17463 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.002507 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.468935 B =11168.070430 C =11570.378897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.108 4.108 12 C -0.109 4.109 13 C 0.456 3.544 14 O -0.489 6.489 15 O -0.348 6.348 16 C 0.135 3.865 17 H 0.103 0.897 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.135 4.135 21 C -0.070 4.070 22 C -0.164 4.164 23 C 0.100 3.900 24 N -0.457 5.457 25 C 0.096 3.904 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -29.142 3.051 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.147 4.147 13 C 0.298 3.702 14 O -0.374 6.374 15 O -0.265 6.265 16 C 0.079 3.921 17 H 0.121 0.879 18 C -0.151 4.151 19 C -0.116 4.116 20 C -0.137 4.137 21 C -0.096 4.096 22 C -0.184 4.184 23 C -0.058 4.058 24 N -0.165 5.165 25 C -0.042 4.042 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.779 -28.343 2.855 29.067 hybrid contribution 0.776 0.191 0.485 0.935 sum 6.555 -28.151 3.340 29.097 Atomic orbital electron populations 1.69978 1.06056 1.26515 1.50932 1.25046 0.94844 0.99246 0.95457 0.86604 0.79821 0.83567 0.78049 1.20710 1.19905 1.21258 1.21278 0.93004 0.91159 1.50412 0.92708 1.19097 0.94034 0.91205 0.97379 1.21647 0.99132 0.93588 1.00344 1.21575 0.97083 0.92618 1.03296 1.21594 0.99900 0.87884 1.05317 1.24250 0.87877 0.85869 0.72183 1.90689 1.15435 1.87345 1.43958 1.86652 1.41168 1.14344 1.84360 1.21908 0.96713 0.83113 0.90394 0.87904 1.22436 1.00097 0.95066 0.97492 1.21007 0.98685 1.01518 0.90346 1.21474 0.98286 0.97768 0.96164 1.21069 0.97828 0.99008 0.91701 1.22171 0.97208 0.98501 1.00486 1.22767 0.97378 0.92776 0.92891 1.66917 1.20402 1.28333 1.00879 1.21935 0.92638 0.93867 0.95712 0.93039 0.96548 0.96521 0.93224 0.93268 0.91508 0.91509 0.87923 0.88118 0.88705 0.88234 0.89790 0.89077 0.84759 0.84290 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.11 -1.97 4.50 -26.73 -0.12 -2.09 16 12 C -0.11 -1.57 5.81 -27.89 -0.16 -1.73 16 13 C 0.46 7.12 7.96 36.00 0.29 7.40 16 14 O -0.49 -9.19 15.19 -18.75 -0.28 -9.48 16 15 O -0.35 -4.69 9.93 -39.27 -0.39 -5.08 16 16 C 0.13 1.60 3.21 -26.80 -0.09 1.51 16 17 H 0.10 1.34 7.14 -51.93 -0.37 0.97 16 18 C -0.11 -0.83 6.81 -25.31 -0.17 -1.00 16 19 C -0.08 -0.53 6.77 -26.91 -0.18 -0.71 16 20 C -0.13 -1.29 6.16 -104.20 -0.64 -1.93 16 21 C -0.07 -0.56 10.17 -39.27 -0.40 -0.96 16 22 C -0.16 -1.31 10.12 -39.46 -0.40 -1.71 16 23 C 0.10 1.06 11.18 -17.62 -0.20 0.86 16 24 N -0.46 -6.48 10.35 -9.19 -0.10 -6.58 16 25 C 0.10 1.22 7.00 -82.04 -0.57 0.65 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -35.58 348.96 -9.38 -44.96 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.25 Total: -3.51 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.34 Total: -15.62 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.64 Total: -33.57 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.67 Total: -14.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.58 -9.38 -44.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805927087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.670 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds