Wall clock time and date at job start Tue Mar 31 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00271 * 359.97438 * 13 12 11 15 15 O 1.34234 * 119.99881 * 179.97438 * 13 12 11 16 16 C 1.45199 * 116.99947 * 179.97438 * 15 13 12 17 17 H 1.09007 * 110.26002 * 27.94967 * 16 15 13 18 18 C 1.54336 * 110.29283 * 149.99876 * 16 15 13 19 19 C 1.54368 * 102.38606 * 92.59831 * 18 16 15 20 20 C 1.51227 * 105.11843 * 26.29498 * 19 18 16 21 21 C 1.38744 * 130.69229 * 162.82541 * 20 19 18 22 22 C 1.38575 * 118.55592 * 180.02562 * 21 20 19 23 23 C 1.38230 * 118.99106 * 0.04016 * 22 21 20 24 24 N 1.31688 * 120.80118 * 359.97438 * 23 22 21 25 25 C 1.32299 * 122.02750 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 34 34 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 35 35 H 1.09003 * 110.82353 * 210.82136 * 18 16 15 36 36 H 1.08999 * 110.82757 * 334.17622 * 18 16 15 37 37 H 1.09001 * 110.31516 * 145.20740 * 19 18 16 38 38 H 1.09001 * 110.31588 * 267.38658 * 19 18 16 39 39 H 1.07998 * 120.72278 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.50889 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.60441 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5126 -7.4552 -0.0009 15 8 2.3921 -8.6176 -0.0029 16 6 1.6013 -9.8354 -0.0022 17 1 0.6375 -9.6598 -0.4804 18 6 2.3602 -10.9669 -0.7272 19 6 3.1041 -11.6627 0.4328 20 6 2.2687 -11.3822 1.6617 21 6 2.2579 -11.9936 2.9071 22 6 1.3737 -11.5268 3.8666 23 6 0.5365 -10.4734 3.5502 24 7 0.5739 -9.9171 2.3571 25 6 1.4041 -10.3332 1.4148 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.1010 -6.0919 -0.8918 34 1 3.1012 -6.0927 0.8881 35 1 1.6642 -11.6539 -1.2086 36 1 3.0636 -10.5587 -1.4530 37 1 3.1648 -12.7362 0.2535 38 1 4.1023 -11.2407 0.5494 39 1 2.9241 -12.8154 3.1241 40 1 1.3390 -11.9792 4.8467 41 1 -0.1568 -10.1020 4.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805927087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:02 Heat of formation + Delta-G solvation = -93.565025 kcal Electronic energy + Delta-G solvation = -21790.107588 eV Core-core repulsion = 18440.205822 eV Total energy + Delta-G solvation = -3349.901766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15944 -41.06390 -38.23449 -36.71316 -36.26329 -34.67523 -33.52868 -31.70948 -30.32563 -28.70873 -27.49414 -24.73013 -24.57075 -22.94402 -22.22528 -21.74765 -21.45228 -18.87150 -18.40937 -18.23695 -17.53802 -17.32144 -16.72171 -16.46128 -16.25618 -15.87640 -15.60045 -14.67505 -14.59493 -14.57661 -14.17918 -14.06947 -13.78205 -13.59697 -13.42853 -13.32810 -12.84092 -12.79083 -12.43314 -12.35288 -12.23779 -12.21402 -12.14994 -11.97023 -11.59115 -11.41753 -11.30843 -11.06422 -10.76879 -10.55489 -10.28208 -9.87173 -8.19219 -6.31370 -0.05169 0.27384 1.17213 1.40284 1.42686 1.53801 1.64318 2.41827 2.76114 2.85813 3.13656 3.33315 3.61255 3.73875 3.88776 3.93155 3.99214 4.03612 4.04876 4.22921 4.39586 4.41278 4.55347 4.60274 4.60476 4.73210 4.76423 4.83198 4.92472 4.96670 5.09961 5.11200 5.13914 5.21468 5.27503 5.30371 5.42975 5.55131 5.70302 5.75802 5.86875 6.24395 6.71426 6.87038 6.98378 7.38262 8.93198 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.002507 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.468935 B =11168.070430 C =11570.378897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.258 1.258 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.099 4.099 12 C -0.100 4.100 13 C 0.458 3.542 14 O -0.533 6.533 15 O -0.341 6.341 16 C 0.123 3.877 17 H 0.076 0.924 18 C -0.104 4.104 19 C -0.072 4.072 20 C -0.132 4.132 21 C -0.071 4.071 22 C -0.151 4.151 23 C 0.074 3.926 24 N -0.511 5.511 25 C 0.054 3.946 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.013 1.013 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -30.944 3.318 32.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.209 1.209 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.137 4.137 13 C 0.302 3.698 14 O -0.421 6.421 15 O -0.258 6.258 16 C 0.067 3.933 17 H 0.094 0.906 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.171 4.171 23 C -0.084 4.084 24 N -0.221 5.221 25 C -0.083 4.083 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.212 -30.174 3.118 31.703 hybrid contribution -0.357 0.668 0.461 0.887 sum 8.855 -29.506 3.579 31.013 Atomic orbital electron populations 1.70136 1.08094 1.27774 1.51893 1.26104 0.95787 1.03780 0.94772 0.85372 0.78696 0.78005 0.78510 1.19759 1.18237 1.20906 1.21751 0.93787 0.92160 1.50248 0.91489 1.19050 0.94653 0.93693 0.94426 1.21434 0.97879 0.92210 1.01694 1.21344 0.97416 0.93382 1.01572 1.21487 0.98792 0.85539 1.07868 1.24435 0.87314 0.86937 0.71080 1.90680 1.17314 1.88020 1.46097 1.86612 1.41020 1.14420 1.83722 1.22324 0.96309 0.83410 0.91231 0.90620 1.22547 1.00320 0.93519 0.97783 1.21099 0.98138 1.03351 0.88364 1.21868 0.97426 0.96398 0.97743 1.21572 0.97845 0.99432 0.90780 1.22559 0.95611 0.96904 1.02006 1.23122 0.98808 0.94133 0.92334 1.66801 1.22217 1.30493 1.02570 1.22141 0.94386 0.95945 0.95856 0.92839 0.99786 0.99440 0.91489 0.92012 0.93789 0.92945 0.84701 0.85996 0.86922 0.86837 0.86644 0.88189 0.80949 0.80777 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.09 -3.94 5.15 30.59 0.16 -3.78 16 11 C -0.10 -3.71 4.50 30.59 0.14 -3.57 16 12 C -0.10 -2.77 5.81 29.85 0.17 -2.60 16 13 C 0.46 14.62 7.96 71.23 0.57 15.18 16 14 O -0.53 -21.36 15.19 21.95 0.33 -21.02 16 15 O -0.34 -9.16 9.93 -51.46 -0.51 -9.67 16 16 C 0.12 2.97 3.21 30.55 0.10 3.07 16 17 H 0.08 2.17 7.14 -2.38 -0.02 2.15 16 18 C -0.10 -1.32 6.81 31.51 0.21 -1.11 16 19 C -0.07 -0.74 6.77 30.48 0.21 -0.53 16 20 C -0.13 -2.28 6.16 -19.59 -0.12 -2.40 16 21 C -0.07 -0.91 10.17 22.47 0.23 -0.68 16 22 C -0.15 -2.11 10.12 22.35 0.23 -1.89 16 23 C 0.07 1.59 11.18 84.71 0.95 2.53 16 24 N -0.51 -15.29 10.35 -182.98 -1.89 -17.18 16 25 C 0.05 1.38 7.00 42.72 0.30 1.68 16 26 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 27 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 28 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 32 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 33 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -82.30 348.96 5.23 -77.08 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.01 Total: 7.29 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.98 Total: -24.35 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.61 Total: -76.59 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.18 Total: -30.69 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -82.30 5.23 -77.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805927087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.489 kcal (2) G-P(sol) polarization free energy of solvation -82.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds