Wall clock time and date at job start Tue Mar 31 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47185 * 239.99601 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47113 * 119.99702 * 3 2 1 7 7 C 1.37879 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.20831 * 119.99583 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00783 * 180.02562 * 11 10 9 14 14 C 1.45192 * 117.00450 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47106 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.47068 * 64.16425 * 15 14 13 17 17 C 1.47911 * 111.00401 * 55.81874 * 16 15 14 18 18 C 1.54572 * 102.63884 * 149.15136 * 17 16 15 19 19 C 1.51580 * 102.85373 * 334.55192 * 18 17 16 20 20 C 1.37921 * 131.55956 * 196.05187 * 19 18 17 21 21 C 1.38303 * 120.07833 * 179.32152 * 20 19 18 22 22 C 1.38310 * 119.88631 * 0.02562 * 21 20 19 23 23 C 1.37905 * 120.26233 * 0.15309 * 22 21 20 24 24 C 1.38960 * 107.95954 * 15.73145 * 19 18 17 25 25 H 0.97001 * 120.00001 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46736 * 60.00272 * 9 7 2 27 27 H 1.08997 * 109.47038 * 300.00733 * 9 7 2 28 28 H 1.08999 * 109.47284 * 60.00440 * 10 9 7 29 29 H 1.08996 * 109.47159 * 300.00107 * 10 9 7 30 30 H 1.08994 * 109.47525 * 59.99921 * 14 13 11 31 31 H 1.09001 * 109.46916 * 299.99832 * 14 13 11 32 32 H 1.08997 * 109.47017 * 304.16111 * 15 14 13 33 33 H 1.09001 * 109.46952 * 184.16048 * 15 14 13 34 34 H 1.09003 * 110.78109 * 267.47472 * 17 16 15 35 35 H 1.08999 * 110.77904 * 30.71230 * 17 16 15 36 36 H 1.08996 * 110.77584 * 216.19264 * 18 17 16 37 37 H 1.08999 * 110.68808 * 92.87370 * 18 17 16 38 38 H 1.07995 * 119.95999 * 359.33825 * 20 19 18 39 39 H 1.07995 * 120.05645 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.86328 * 180.16826 * 22 21 20 41 41 H 1.07999 * 119.90132 * 179.71631 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2833 -4.9672 -0.0020 13 8 2.1626 -6.1298 -0.0008 14 6 1.3717 -7.3474 -0.0020 15 6 2.3037 -8.5608 -0.0007 16 7 3.0788 -8.5816 1.2470 17 6 2.1859 -8.5667 2.4261 18 6 2.9972 -9.3611 3.4749 19 6 3.8858 -10.2408 2.6180 20 6 4.6232 -11.3666 2.9200 21 6 5.3529 -12.0027 1.9322 22 6 5.3425 -11.5077 0.6408 23 6 4.6098 -10.3803 0.3345 24 6 3.8737 -9.7320 1.3250 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6045 0.8895 29 1 2.8717 -3.6044 -0.8905 30 1 0.7439 -7.3720 -0.8926 31 1 0.7420 -7.3725 0.8873 32 1 2.9839 -8.4974 -0.8500 33 1 1.7122 -9.4733 -0.0761 34 1 2.0098 -7.5457 2.7650 35 1 1.2431 -9.0665 2.2036 36 1 2.3377 -9.9671 4.0959 37 1 3.5965 -8.6883 4.0884 38 1 4.6306 -11.7519 3.9288 39 1 5.9298 -12.8844 2.1689 40 1 5.9102 -12.0063 -0.1308 41 1 4.6095 -9.9961 -0.6749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813101115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:58 Heat of formation + Delta-G solvation = -58.748874 kcal Electronic energy + Delta-G solvation = -21947.458792 eV Core-core repulsion = 18599.066768 eV Total energy + Delta-G solvation = -3348.392024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01816 -39.84714 -37.25155 -35.98596 -33.56844 -33.28465 -31.27563 -30.74142 -29.15513 -28.19250 -25.96148 -23.58200 -23.20284 -22.11126 -21.49232 -20.55719 -19.77675 -17.42838 -17.10891 -16.39093 -16.33896 -16.06011 -15.71783 -15.50508 -15.17056 -14.47769 -14.29851 -13.96847 -13.79935 -13.26492 -13.06403 -12.96316 -12.48236 -12.34918 -12.22447 -12.08886 -11.80300 -11.58393 -11.44792 -11.15114 -11.06912 -10.93197 -10.65623 -10.35163 -10.17269 -10.02168 -9.89230 -9.51992 -9.17756 -9.03215 -8.36541 -7.91892 -6.00589 -4.05354 1.13650 1.16869 2.85206 3.08370 3.33436 3.33750 3.38223 3.40777 3.63066 4.22731 4.38377 4.45146 4.63009 4.72401 4.79698 4.85409 4.92904 5.08549 5.09689 5.19327 5.27530 5.33050 5.34723 5.45725 5.54247 5.61996 5.66263 5.71569 5.77472 6.06810 6.15475 6.21441 6.23637 6.31311 6.45754 6.64934 6.73938 6.95931 7.00122 7.67304 7.74690 7.99096 8.27645 8.43902 9.01617 9.58557 11.10435 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.002609 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.156293 B =10729.745651 C =10887.662898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.103 4.103 11 C 0.455 3.545 12 O -0.510 6.510 13 O -0.352 6.352 14 C 0.063 3.937 15 C 0.051 3.949 16 N -0.465 5.465 17 C 0.043 3.957 18 C -0.083 4.083 19 C -0.143 4.143 20 C -0.081 4.081 21 C -0.149 4.149 22 C -0.095 4.095 23 C -0.140 4.140 24 C 0.100 3.900 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -25.476 3.759 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.140 4.140 11 C 0.299 3.701 12 O -0.397 6.397 13 O -0.270 6.270 14 C -0.012 4.012 15 C -0.075 4.075 16 N -0.179 5.179 17 C -0.083 4.083 18 C -0.121 4.121 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.168 4.168 22 C -0.113 4.113 23 C -0.161 4.161 24 C 0.002 3.998 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.776 -24.836 3.729 26.291 hybrid contribution -0.098 0.313 -0.067 0.334 sum 7.678 -24.524 3.661 25.957 Atomic orbital electron populations 1.69984 1.06096 1.26853 1.49935 1.25021 0.94861 0.99328 0.95133 0.86599 0.79507 0.82873 0.78661 1.20158 1.21267 1.20150 1.21131 0.93052 0.90671 1.51811 0.92356 1.19004 0.93214 0.89306 0.98804 1.21745 1.00622 0.87667 1.04000 1.24797 0.87894 0.85861 0.71517 1.90631 1.15950 1.87792 1.45304 1.86653 1.41306 1.14401 1.84595 1.22975 0.93035 0.82376 1.02813 1.22418 0.96394 0.96054 0.92638 1.60504 1.20609 1.33162 1.03578 1.23317 0.94368 1.02055 0.88571 1.21297 0.96863 0.96812 0.97093 1.20535 1.02194 0.96960 0.94919 1.20378 0.96015 0.94251 0.99316 1.20975 1.01494 1.01136 0.93216 1.20878 0.98079 0.95638 0.96719 1.20491 1.00276 0.96869 0.98417 1.19717 0.96915 0.88584 0.94629 0.92808 0.95656 0.95661 0.88966 0.89025 0.90544 0.91231 0.88745 0.91605 0.88327 0.92058 0.90043 0.89250 0.86218 0.85985 0.85799 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.10 -2.14 5.75 -27.89 -0.16 -2.30 16 11 C 0.46 9.04 7.96 36.01 0.29 9.33 16 12 O -0.51 -11.60 15.73 -18.75 -0.30 -11.89 16 13 O -0.35 -5.86 10.16 -39.25 -0.40 -6.25 16 14 C 0.06 0.82 5.40 37.16 0.20 1.02 16 15 C 0.05 0.54 4.93 -3.82 -0.02 0.52 16 16 N -0.47 -5.48 5.07 -169.03 -0.86 -6.34 16 17 C 0.04 0.44 5.41 -2.44 -0.01 0.42 16 18 C -0.08 -0.75 7.03 -26.62 -0.19 -0.94 16 19 C -0.14 -1.48 6.23 -104.04 -0.65 -2.13 16 20 C -0.08 -0.72 10.03 -39.67 -0.40 -1.12 16 21 C -0.15 -1.23 10.06 -39.53 -0.40 -1.63 16 22 C -0.09 -0.81 10.02 -39.68 -0.40 -1.21 16 23 C -0.14 -1.39 9.54 -39.27 -0.37 -1.77 16 24 C 0.10 1.13 5.94 -83.40 -0.50 0.63 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 29 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 31 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 32 H 0.09 0.96 7.52 -51.93 -0.39 0.57 16 33 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 34 H 0.10 1.08 8.07 -51.93 -0.42 0.66 16 35 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 1.07 7.50 -52.49 -0.39 0.68 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -33.38 344.95 -9.91 -43.28 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.14 Total: -2.11 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.13 Total: -12.02 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -0.12 Total: -32.78 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.69 Total: -18.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.38 -9.91 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813101115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds