Wall clock time and date at job start Tue Mar 31 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47185 * 239.99601 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47113 * 119.99702 * 3 2 1 7 7 C 1.37879 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.20831 * 119.99583 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00783 * 180.02562 * 11 10 9 14 14 C 1.45192 * 117.00450 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47106 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.47068 * 64.16425 * 15 14 13 17 17 C 1.47911 * 111.00401 * 55.81874 * 16 15 14 18 18 C 1.54572 * 102.63884 * 149.15136 * 17 16 15 19 19 C 1.51580 * 102.85373 * 334.55192 * 18 17 16 20 20 C 1.37921 * 131.55956 * 196.05187 * 19 18 17 21 21 C 1.38303 * 120.07833 * 179.32152 * 20 19 18 22 22 C 1.38310 * 119.88631 * 0.02562 * 21 20 19 23 23 C 1.37905 * 120.26233 * 0.15309 * 22 21 20 24 24 C 1.38960 * 107.95954 * 15.73145 * 19 18 17 25 25 H 0.97001 * 120.00001 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46736 * 60.00272 * 9 7 2 27 27 H 1.08997 * 109.47038 * 300.00733 * 9 7 2 28 28 H 1.08999 * 109.47284 * 60.00440 * 10 9 7 29 29 H 1.08996 * 109.47159 * 300.00107 * 10 9 7 30 30 H 1.08994 * 109.47525 * 59.99921 * 14 13 11 31 31 H 1.09001 * 109.46916 * 299.99832 * 14 13 11 32 32 H 1.08997 * 109.47017 * 304.16111 * 15 14 13 33 33 H 1.09001 * 109.46952 * 184.16048 * 15 14 13 34 34 H 1.09003 * 110.78109 * 267.47472 * 17 16 15 35 35 H 1.08999 * 110.77904 * 30.71230 * 17 16 15 36 36 H 1.08996 * 110.77584 * 216.19264 * 18 17 16 37 37 H 1.08999 * 110.68808 * 92.87370 * 18 17 16 38 38 H 1.07995 * 119.95999 * 359.33825 * 20 19 18 39 39 H 1.07995 * 120.05645 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.86328 * 180.16826 * 22 21 20 41 41 H 1.07999 * 119.90132 * 179.71631 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2833 -4.9672 -0.0020 13 8 2.1626 -6.1298 -0.0008 14 6 1.3717 -7.3474 -0.0020 15 6 2.3037 -8.5608 -0.0007 16 7 3.0788 -8.5816 1.2470 17 6 2.1859 -8.5667 2.4261 18 6 2.9972 -9.3611 3.4749 19 6 3.8858 -10.2408 2.6180 20 6 4.6232 -11.3666 2.9200 21 6 5.3529 -12.0027 1.9322 22 6 5.3425 -11.5077 0.6408 23 6 4.6098 -10.3803 0.3345 24 6 3.8737 -9.7320 1.3250 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6045 0.8895 29 1 2.8717 -3.6044 -0.8905 30 1 0.7439 -7.3720 -0.8926 31 1 0.7420 -7.3725 0.8873 32 1 2.9839 -8.4974 -0.8500 33 1 1.7122 -9.4733 -0.0761 34 1 2.0098 -7.5457 2.7650 35 1 1.2431 -9.0665 2.2036 36 1 2.3377 -9.9671 4.0959 37 1 3.5965 -8.6883 4.0884 38 1 4.6306 -11.7519 3.9288 39 1 5.9298 -12.8844 2.1689 40 1 5.9102 -12.0063 -0.1308 41 1 4.6095 -9.9961 -0.6749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813101115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:58 Heat of formation + Delta-G solvation = -77.741753 kcal Electronic energy + Delta-G solvation = -21948.282385 eV Core-core repulsion = 18599.066768 eV Total energy + Delta-G solvation = -3349.215618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84667 -41.28617 -38.19468 -37.26006 -35.64835 -34.10477 -33.14739 -31.68320 -29.85333 -29.15131 -27.86541 -24.76400 -24.05940 -23.61030 -22.17199 -21.62415 -21.25971 -19.10763 -18.20405 -18.00099 -17.37999 -17.20427 -16.65020 -16.58116 -16.47249 -16.22791 -15.36195 -14.91646 -14.72744 -14.44095 -14.29025 -14.10395 -13.83137 -13.61764 -13.43281 -13.17153 -12.96594 -12.80000 -12.58625 -12.51661 -12.37579 -12.28903 -12.00217 -11.76219 -11.75102 -11.60349 -11.44034 -11.28781 -10.85284 -10.57345 -9.70496 -8.66484 -8.20349 -6.34189 0.44876 0.48784 1.25096 1.42757 1.47122 1.54650 1.72644 2.43021 2.58122 2.92078 3.13185 3.46597 3.59724 3.76911 3.89020 3.97834 4.09255 4.13701 4.20740 4.29447 4.35403 4.43649 4.44714 4.51270 4.58603 4.65937 4.70259 4.70760 4.90421 4.94337 4.97044 5.10817 5.36284 5.40796 5.46949 5.54897 5.55012 5.65882 5.76694 5.80069 5.98030 6.13151 6.28088 6.79879 6.87200 7.35926 8.92106 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.002609 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.156293 B =10729.745651 C =10887.662898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.095 4.095 11 C 0.465 3.535 12 O -0.546 6.546 13 O -0.345 6.345 14 C 0.058 3.942 15 C 0.059 3.941 16 N -0.486 5.486 17 C 0.039 3.961 18 C -0.079 4.079 19 C -0.159 4.159 20 C -0.088 4.088 21 C -0.150 4.150 22 C -0.098 4.098 23 C -0.152 4.152 24 C 0.077 3.923 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.011 1.011 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -26.707 3.899 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.132 4.132 11 C 0.311 3.689 12 O -0.436 6.436 13 O -0.262 6.262 14 C -0.016 4.016 15 C -0.067 4.067 16 N -0.200 5.200 17 C -0.087 4.087 18 C -0.116 4.116 19 C -0.162 4.162 20 C -0.107 4.107 21 C -0.168 4.168 22 C -0.117 4.117 23 C -0.173 4.173 24 C -0.022 4.022 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.035 -26.104 3.870 28.233 hybrid contribution -0.775 0.546 -0.104 0.954 sum 9.260 -25.558 3.766 27.444 Atomic orbital electron populations 1.70150 1.08197 1.28018 1.51151 1.26098 0.95752 1.03845 0.94476 0.85368 0.78070 0.77315 0.79480 1.18736 1.21201 1.18767 1.21618 0.94058 0.91374 1.51301 0.90605 1.18774 0.93612 0.91888 0.95413 1.21485 0.99336 0.86390 1.05969 1.24442 0.87082 0.86662 0.70738 1.90622 1.17415 1.88413 1.47178 1.86610 1.41297 1.14565 1.83727 1.23308 0.93647 0.81453 1.03198 1.22395 0.96249 0.95298 0.92733 1.60525 1.21223 1.34188 1.04045 1.23329 0.94959 1.01594 0.88786 1.21287 0.96859 0.96704 0.96797 1.20783 1.02864 0.97657 0.94874 1.20694 0.95624 0.93812 1.00556 1.21348 1.00975 1.01603 0.92909 1.21212 0.97688 0.95145 0.97627 1.20719 1.00532 0.97473 0.98601 1.19899 0.97729 0.88976 0.95550 0.92715 0.99155 0.99208 0.87038 0.86857 0.89912 0.91220 0.88326 0.89415 0.89730 0.91048 0.88230 0.89602 0.84350 0.83525 0.83533 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.22 4.26 29.85 0.13 2.35 16 10 C -0.09 -3.92 5.75 29.85 0.17 -3.75 16 11 C 0.47 18.63 7.96 71.24 0.57 19.20 16 12 O -0.55 -25.61 15.73 21.95 0.35 -25.27 16 13 O -0.35 -11.31 10.16 -51.39 -0.52 -11.83 16 14 C 0.06 1.48 5.40 71.98 0.39 1.87 16 15 C 0.06 1.18 4.93 86.30 0.43 1.61 16 16 N -0.49 -11.08 5.07 -688.69 -3.49 -14.57 16 17 C 0.04 0.78 5.41 86.64 0.47 1.25 16 18 C -0.08 -1.37 7.03 30.66 0.22 -1.15 16 19 C -0.16 -3.08 6.23 -19.49 -0.12 -3.20 16 20 C -0.09 -1.40 10.03 22.21 0.22 -1.17 16 21 C -0.15 -2.08 10.06 22.30 0.22 -1.86 16 22 C -0.10 -1.46 10.02 22.21 0.22 -1.23 16 23 C -0.15 -2.82 9.54 22.47 0.21 -2.60 16 24 C 0.08 1.64 5.94 38.28 0.23 1.87 16 25 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 26 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 27 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 28 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 29 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 30 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 31 H 0.07 1.80 6.73 -2.39 -0.02 1.78 16 32 H 0.10 1.88 7.52 -2.39 -0.02 1.87 16 33 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.08 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.13 2.08 7.50 -2.91 -0.02 2.05 16 Total: -1.00 -73.25 344.95 3.70 -69.55 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.01 Total: 11.54 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 4.05 Total: -17.26 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -3.21 Total: -72.84 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.18 Total: -37.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.25 3.70 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813101115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.190 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds