Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00272 * 2 1 4 4 N 1.46490 * 109.47371 * 125.00155 * 3 2 1 5 5 C 1.46499 * 120.00145 * 270.00424 * 4 3 2 6 6 C 1.50700 * 109.47264 * 269.99471 * 5 4 3 7 7 H 1.08005 * 119.99392 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00253 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99914 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00040 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.46910 * 90.00241 * 10 8 6 12 12 H 1.48496 * 109.47211 * 210.00191 * 10 8 6 13 13 H 1.48504 * 109.47070 * 330.00243 * 10 8 6 14 14 C 1.34780 * 119.99905 * 90.00012 * 4 3 2 15 15 O 1.21708 * 119.99991 * 180.02562 * 14 4 3 16 16 C 1.46329 * 119.99802 * 0.02562 * 14 4 3 17 17 C 1.34902 * 119.99848 * 173.21829 * 16 14 4 18 18 C 1.47091 * 120.00049 * 349.66535 * 17 16 14 19 19 C 1.39896 * 120.18806 * 315.09594 * 18 17 16 20 20 C 1.37810 * 119.84545 * 179.71839 * 19 18 17 21 21 C 1.38485 * 120.24266 * 0.55726 * 20 19 18 22 22 C 1.38264 * 120.39044 * 359.71196 * 21 20 19 23 23 C 1.38234 * 120.13951 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.11889 * 179.97438 * 23 22 21 25 25 H 1.07999 * 119.99919 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99951 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46907 * 5.00140 * 3 2 1 29 29 H 1.09000 * 109.47240 * 245.00710 * 3 2 1 30 30 H 1.08994 * 109.47336 * 29.99705 * 5 4 3 31 31 H 1.09008 * 109.47282 * 149.99648 * 5 4 3 32 32 H 0.97005 * 119.99853 * 180.02562 * 9 8 6 33 33 H 1.07992 * 120.00523 * 352.94981 * 16 14 4 34 34 H 1.07998 * 120.00305 * 169.66024 * 17 16 14 35 35 H 1.08000 * 120.07348 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.87682 * 180.25008 * 20 19 18 37 37 H 1.08005 * 119.80552 * 179.74105 * 21 20 19 38 38 H 1.07996 * 119.93538 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5197 4.0664 3.6087 9 7 2.7684 5.3569 3.6570 10 14 1.7264 3.2127 5.0686 11 1 2.7832 2.7225 5.9895 12 1 0.8501 4.1725 5.7870 13 1 0.9152 2.0646 4.5899 14 6 4.2498 0.8661 0.9822 15 8 5.0225 0.8879 1.9222 16 6 4.6842 0.3342 -0.3099 17 6 5.9761 -0.0046 -0.4999 18 6 6.9887 0.3670 0.5002 19 6 6.9994 1.6555 1.0450 20 6 7.9477 1.9944 1.9859 21 6 8.8965 1.0679 2.3850 22 6 8.8985 -0.2066 1.8488 23 6 7.9513 -0.5653 0.9080 24 9 7.9539 -1.8105 0.3841 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4890 1.6966 2.5459 31 1 3.0991 1.3601 3.2259 32 1 2.5402 5.8654 4.4509 33 1 3.9699 0.2087 -1.1100 34 1 6.2670 -0.5489 -1.3862 35 1 6.2637 2.3816 0.7321 36 1 7.9540 2.9877 2.4098 37 1 9.6390 1.3423 3.1197 38 1 9.6415 -0.9234 2.1657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814137343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = 2.053667 kcal Electronic energy + Delta-G solvation = -22658.139074 eV Core-core repulsion = 19188.923341 eV Total energy + Delta-G solvation = -3469.215733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.68505 -39.66125 -38.24929 -35.84438 -33.82093 -33.04670 -32.15180 -30.25435 -29.68221 -28.13801 -25.62917 -24.20020 -22.56210 -22.08451 -20.56265 -19.86510 -18.18750 -17.45111 -16.95158 -16.78447 -16.00516 -15.79483 -15.37759 -15.00473 -14.69099 -14.39455 -13.97382 -13.88149 -13.50205 -13.10917 -13.07411 -12.73489 -12.51042 -12.31963 -11.90716 -11.74329 -11.63030 -11.37036 -11.18883 -10.95623 -10.82281 -10.54362 -10.18097 -9.81145 -9.57858 -9.29469 -9.15162 -8.61334 -8.38796 -7.90267 -7.71159 -6.11711 -4.10266 0.90842 1.58252 2.04419 2.35635 3.27615 3.33706 3.36287 3.85768 3.93270 3.97922 4.37599 4.48583 4.80267 4.94908 5.01629 5.16312 5.21851 5.30502 5.34296 5.41339 5.53702 5.62312 5.68192 5.93004 6.06833 6.11982 6.17289 6.25371 6.39297 6.46423 6.64144 6.70853 6.73983 6.82766 6.83438 6.95700 7.19957 7.33706 7.58625 8.21791 8.43713 8.89269 8.96078 9.49149 11.01389 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.005964 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.203360 B = 4693.718027 C = 6177.189281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.526 4.526 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.530 3.470 15 O -0.526 6.526 16 C -0.194 4.194 17 C -0.043 4.043 18 C -0.096 4.096 19 C 0.000 4.000 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.173 4.173 23 C 0.104 3.896 24 F -0.145 7.145 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -10.537 -9.072 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.311 5.311 5 C 0.096 3.904 6 C -0.565 4.565 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.319 3.681 15 O -0.405 6.405 16 C -0.215 4.215 17 C -0.063 4.063 18 C -0.097 4.097 19 C -0.019 4.019 20 C -0.155 4.155 21 C -0.102 4.102 22 C -0.192 4.192 23 C 0.085 3.915 24 F -0.123 7.123 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.448 -10.378 -8.442 14.445 hybrid contribution -0.701 -0.616 0.772 1.211 sum 4.747 -10.994 -7.671 14.221 Atomic orbital electron populations 1.23846 0.95862 1.01822 1.00605 1.23483 0.96417 0.99124 0.99857 1.20648 0.93050 0.95333 0.89885 1.47882 1.10819 1.59438 1.12938 1.19656 0.94900 0.95154 0.80663 1.21291 1.41199 0.91013 1.02991 0.90730 1.24822 0.95242 0.94689 0.98071 1.69891 1.47837 1.06560 1.29248 0.86890 0.79928 0.79704 0.83446 1.19931 1.21072 1.19077 1.18285 0.82322 0.78773 0.88718 1.90841 1.51561 1.56166 1.41971 1.23299 0.96746 1.03700 0.97777 1.22131 0.92116 0.95014 0.97017 1.18848 0.95925 0.94423 1.00467 1.21086 0.94074 0.94211 0.92505 1.21070 0.95613 1.00378 0.98410 1.20993 0.98388 0.92400 0.98420 1.20839 1.00431 0.98237 0.99692 1.17741 0.97278 0.79560 0.96911 1.91435 1.96217 1.39288 1.85386 0.88745 0.88220 0.87631 0.89214 0.90223 0.95326 0.94529 0.92572 0.84953 0.84978 0.85408 0.85434 0.85641 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 14.32 29.01 0.42 -1.81 16 2 C -0.17 -2.28 9.85 -36.03 -0.35 -2.63 16 3 C 0.13 2.08 5.51 -5.20 -0.03 2.05 16 4 N -0.58 -11.67 2.44 -178.12 -0.43 -12.11 16 5 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 6 C -0.53 -14.69 9.94 -34.44 -0.34 -15.03 16 7 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 14 C 0.53 10.52 6.69 -13.01 -0.09 10.43 16 15 O -0.53 -12.22 11.73 5.18 0.06 -12.16 16 16 C -0.19 -2.93 9.04 -37.51 -0.34 -3.27 16 17 C -0.04 -0.62 9.47 -37.18 -0.35 -0.97 16 18 C -0.10 -1.58 4.51 -105.00 -0.47 -2.06 16 19 C 0.00 -0.01 6.60 -39.12 -0.26 -0.27 16 20 C -0.14 -2.21 10.03 -39.65 -0.40 -2.61 16 21 C -0.08 -1.18 10.04 -39.48 -0.40 -1.58 16 22 C -0.17 -2.46 10.01 -39.57 -0.40 -2.86 16 23 C 0.10 1.65 7.30 -38.89 -0.28 1.36 16 24 F -0.14 -2.21 16.84 2.25 0.04 -2.17 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.19 7.84 -52.49 -0.41 0.77 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.08 1.03 6.19 -51.93 -0.32 0.71 16 30 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.04 0.95 6.85 -51.92 -0.36 0.60 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.13 1.55 6.34 -52.49 -0.33 1.22 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 2.42 7.10 -52.49 -0.37 2.05 16 36 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -32.56 330.07 -7.36 -39.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.69 Total: 3.07 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.41 Total: -12.01 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.34 Total: -38.43 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.06 Total: -12.16 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.56 -7.36 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.976 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds