Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00272 * 2 1 4 4 N 1.46490 * 109.47371 * 125.00155 * 3 2 1 5 5 C 1.46499 * 120.00145 * 270.00424 * 4 3 2 6 6 C 1.50700 * 109.47264 * 269.99471 * 5 4 3 7 7 H 1.08005 * 119.99392 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00253 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99914 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00040 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.46910 * 90.00241 * 10 8 6 12 12 H 1.48496 * 109.47211 * 210.00191 * 10 8 6 13 13 H 1.48504 * 109.47070 * 330.00243 * 10 8 6 14 14 C 1.34780 * 119.99905 * 90.00012 * 4 3 2 15 15 O 1.21708 * 119.99991 * 180.02562 * 14 4 3 16 16 C 1.46329 * 119.99802 * 0.02562 * 14 4 3 17 17 C 1.34902 * 119.99848 * 173.21829 * 16 14 4 18 18 C 1.47091 * 120.00049 * 349.66535 * 17 16 14 19 19 C 1.39896 * 120.18806 * 315.09594 * 18 17 16 20 20 C 1.37810 * 119.84545 * 179.71839 * 19 18 17 21 21 C 1.38485 * 120.24266 * 0.55726 * 20 19 18 22 22 C 1.38264 * 120.39044 * 359.71196 * 21 20 19 23 23 C 1.38234 * 120.13951 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.11889 * 179.97438 * 23 22 21 25 25 H 1.07999 * 119.99919 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99951 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46907 * 5.00140 * 3 2 1 29 29 H 1.09000 * 109.47240 * 245.00710 * 3 2 1 30 30 H 1.08994 * 109.47336 * 29.99705 * 5 4 3 31 31 H 1.09008 * 109.47282 * 149.99648 * 5 4 3 32 32 H 0.97005 * 119.99853 * 180.02562 * 9 8 6 33 33 H 1.07992 * 120.00523 * 352.94981 * 16 14 4 34 34 H 1.07998 * 120.00305 * 169.66024 * 17 16 14 35 35 H 1.08000 * 120.07348 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.87682 * 180.25008 * 20 19 18 37 37 H 1.08005 * 119.80552 * 179.74105 * 21 20 19 38 38 H 1.07996 * 119.93538 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5197 4.0664 3.6087 9 7 2.7684 5.3569 3.6570 10 14 1.7264 3.2127 5.0686 11 1 2.7832 2.7225 5.9895 12 1 0.8501 4.1725 5.7870 13 1 0.9152 2.0646 4.5899 14 6 4.2498 0.8661 0.9822 15 8 5.0225 0.8879 1.9222 16 6 4.6842 0.3342 -0.3099 17 6 5.9761 -0.0046 -0.4999 18 6 6.9887 0.3670 0.5002 19 6 6.9994 1.6555 1.0450 20 6 7.9477 1.9944 1.9859 21 6 8.8965 1.0679 2.3850 22 6 8.8985 -0.2066 1.8488 23 6 7.9513 -0.5653 0.9080 24 9 7.9539 -1.8105 0.3841 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4890 1.6966 2.5459 31 1 3.0991 1.3601 3.2259 32 1 2.5402 5.8654 4.4509 33 1 3.9699 0.2087 -1.1100 34 1 6.2670 -0.5489 -1.3862 35 1 6.2637 2.3816 0.7321 36 1 7.9540 2.9877 2.4098 37 1 9.6390 1.3423 3.1197 38 1 9.6415 -0.9234 2.1657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814137343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -16.388238 kcal Electronic energy + Delta-G solvation = -22658.938775 eV Core-core repulsion = 19188.923341 eV Total energy + Delta-G solvation = -3470.015434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.87878 -41.09711 -39.53436 -37.26530 -35.25570 -34.71019 -33.73069 -31.48896 -31.11404 -29.80865 -26.93609 -25.74110 -24.09039 -23.38035 -22.01853 -20.95550 -19.53094 -19.07478 -18.73055 -18.11883 -17.35944 -17.13104 -16.58596 -16.43374 -16.17087 -15.89030 -15.40617 -15.21504 -14.75746 -14.68271 -14.34607 -14.17970 -14.00532 -13.75389 -13.51617 -13.22508 -13.00049 -12.78244 -12.58795 -12.52548 -12.27315 -12.01570 -11.95438 -11.73770 -11.02527 -10.83444 -10.62006 -10.32476 -9.68178 -9.31215 -9.16201 -8.34193 -6.38028 -0.30605 0.34278 0.84065 1.29532 1.33833 1.34157 1.42379 2.29301 2.40191 2.50587 2.74370 3.00342 3.28528 3.65077 3.75714 3.87074 4.07154 4.12212 4.23899 4.33280 4.39050 4.44587 4.53310 4.75067 4.84747 4.87452 4.94383 5.01620 5.07826 5.10748 5.19822 5.28671 5.45322 5.46041 5.55967 5.62866 5.72316 5.92323 6.00487 6.24920 6.62654 6.71418 7.22434 7.44661 8.82330 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.005964 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.203360 B = 4693.718027 C = 6177.189281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.182 4.182 3 C 0.131 3.869 4 N -0.590 5.590 5 C 0.230 3.770 6 C -0.528 4.528 7 H 0.032 0.968 8 C 0.017 3.983 9 N -0.942 5.942 10 Si 0.940 3.060 11 H -0.277 1.277 12 H -0.274 1.274 13 H -0.243 1.243 14 C 0.520 3.480 15 O -0.570 6.570 16 C -0.199 4.199 17 C -0.032 4.032 18 C -0.112 4.112 19 C -0.022 4.022 20 C -0.156 4.156 21 C -0.079 4.079 22 C -0.169 4.169 23 C 0.095 3.905 24 F -0.140 7.140 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.159 0.841 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -13.222 -9.546 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.320 5.320 5 C 0.107 3.893 6 C -0.567 4.567 7 H 0.051 0.949 8 C -0.182 4.182 9 N -0.582 5.582 10 Si 0.764 3.236 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.167 1.167 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.220 4.220 17 C -0.051 4.051 18 C -0.113 4.113 19 C -0.041 4.041 20 C -0.174 4.174 21 C -0.097 4.097 22 C -0.187 4.187 23 C 0.076 3.924 24 F -0.119 7.119 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.177 0.823 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.159 -13.080 -8.967 16.677 hybrid contribution -0.534 0.275 0.866 1.054 sum 4.625 -12.805 -8.101 15.843 Atomic orbital electron populations 1.24072 0.95510 1.02923 0.98263 1.23331 0.96739 0.98120 1.01905 1.20866 0.92608 0.96408 0.89258 1.47938 1.12010 1.59296 1.12709 1.19234 0.95073 0.92304 0.82677 1.21486 1.40325 0.93154 1.01710 0.94938 1.25724 0.95949 0.95289 1.01215 1.70035 1.49480 1.08303 1.30407 0.85825 0.79127 0.79348 0.79340 1.20309 1.19955 1.16689 1.19099 0.81638 0.78033 0.90137 1.90813 1.52573 1.57932 1.43873 1.23291 0.97962 1.04303 0.96403 1.22570 0.91288 0.93796 0.97452 1.19076 0.96918 0.94104 1.01194 1.20944 0.94421 0.94703 0.94031 1.21253 0.96416 1.01141 0.98575 1.21325 0.98070 0.91854 0.98430 1.21240 1.00307 0.98686 0.98508 1.17893 0.97551 0.79602 0.97400 1.91442 1.96219 1.38864 1.85379 0.86478 0.88278 0.86611 0.90548 0.87692 0.94103 0.96561 0.92323 0.81194 0.80973 0.88294 0.85725 0.82328 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 14.32 67.78 0.97 -2.69 16 2 C -0.18 -4.46 9.85 25.64 0.25 -4.21 16 3 C 0.13 3.93 5.51 85.63 0.47 4.40 16 4 N -0.59 -23.92 2.44 -835.66 -2.04 -25.96 16 5 C 0.23 11.24 4.23 85.63 0.36 11.60 16 6 C -0.53 -30.70 9.94 25.60 0.25 -30.44 16 7 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 8 C 0.02 0.97 5.47 84.65 0.46 1.43 16 9 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 10 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 14 C 0.52 20.88 6.69 86.35 0.58 21.46 16 15 O -0.57 -27.39 11.73 -4.37 -0.05 -27.44 16 16 C -0.20 -5.73 9.04 23.61 0.21 -5.52 16 17 C -0.03 -0.86 9.47 23.83 0.23 -0.63 16 18 C -0.11 -3.67 4.51 -20.11 -0.09 -3.76 16 19 C -0.02 -0.83 6.60 22.57 0.15 -0.68 16 20 C -0.16 -5.20 10.03 22.23 0.22 -4.98 16 21 C -0.08 -2.13 10.04 22.33 0.22 -1.91 16 22 C -0.17 -4.45 10.01 22.28 0.22 -4.23 16 23 C 0.09 2.85 7.30 22.72 0.17 3.02 16 24 F -0.14 -3.96 16.84 44.97 0.76 -3.20 16 25 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 27 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.08 2.47 7.72 -2.39 -0.02 2.45 16 29 H 0.11 2.55 6.19 -2.39 -0.01 2.53 16 30 H 0.04 1.89 7.13 -2.39 -0.02 1.87 16 31 H 0.02 0.86 6.85 -2.38 -0.02 0.85 16 32 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 33 H 0.17 3.47 6.34 -2.91 -0.02 3.46 16 34 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.10 4.10 7.10 -2.91 -0.02 4.08 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 38 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -74.30 330.07 6.54 -67.76 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.00 Total: 18.02 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.69 Total: -17.15 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.74 Total: -84.58 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.76 Total: -3.20 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -74.30 6.54 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.374 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds