Wall clock time and date at job start Tue Mar 31 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 5 5 C 1.50700 * 109.47081 * 65.00449 * 4 2 1 6 6 O 1.21300 * 119.99989 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99975 * 179.97438 * 5 4 2 8 8 C 1.40590 * 120.00115 * 179.97438 * 7 5 4 9 9 C 1.40647 * 126.08039 * 359.69292 * 8 7 5 10 10 N 1.30911 * 108.38570 * 179.81415 * 9 8 7 11 11 N 1.40071 * 108.40609 * 0.44449 * 10 9 8 12 12 C 1.37322 * 126.06766 * 179.69948 * 11 10 9 13 13 H 1.08008 * 119.99992 * 180.02562 * 12 11 10 14 14 C 1.38990 * 120.00205 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99844 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47052 * 59.99928 * 16 14 12 18 18 H 1.48500 * 109.46769 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47103 * 299.99593 * 16 14 12 20 20 C 1.35685 * 126.08377 * 179.97438 * 8 7 5 21 21 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 22 22 C 1.34949 * 126.03877 * 34.99818 * 21 2 1 23 23 C 1.35315 * 107.74402 * 179.97438 * 22 21 2 24 24 C 1.39871 * 107.92270 * 359.97438 * 23 22 21 25 25 N 1.30845 * 108.20111 * 359.74327 * 24 23 22 26 26 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 27 27 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 29 29 H 1.09005 * 109.46847 * 185.00328 * 4 2 1 30 30 H 1.08999 * 109.47369 * 305.00095 * 4 2 1 31 31 H 0.97010 * 119.99836 * 0.02562 * 7 5 4 32 32 H 1.07992 * 125.80840 * 359.95806 * 9 8 7 33 33 H 0.96992 * 119.99681 * 179.97438 * 15 14 12 34 34 H 1.08005 * 126.24571 * 359.97438 * 20 8 7 35 35 H 1.08000 * 126.12550 * 359.95246 * 22 21 2 36 36 H 1.07999 * 126.04090 * 179.97438 * 23 22 21 37 37 H 1.07998 * 125.89940 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0871 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.6131 0.3343 -4.8452 9 6 0.8797 1.5343 -4.8631 10 7 0.7328 1.9099 -6.1085 11 7 1.3551 0.9632 -6.9323 12 6 1.4139 0.9990 -8.3038 13 1 1.9215 0.2130 -8.8433 14 6 0.8201 2.0468 -8.9977 15 7 0.2034 3.0025 -8.3419 16 14 0.8995 2.0950 -10.8634 17 1 0.2471 0.8819 -11.4182 18 1 0.1961 3.3059 -11.3575 19 1 2.3190 2.1361 -11.2975 20 6 1.8927 -0.0011 -6.1298 21 7 2.0183 -0.6907 1.1962 22 6 1.4402 -1.7559 1.7896 23 6 2.1967 -2.0930 2.8596 24 6 3.2745 -1.2036 2.9221 25 7 3.1717 -0.3662 1.9220 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7996 -1.2055 30 1 1.6054 -1.7199 -1.2951 31 1 2.4893 -1.2155 -3.7907 32 1 0.5040 2.0581 -3.9967 33 1 -0.2106 3.7338 -8.8262 34 1 2.4409 -0.8720 -6.4576 35 1 0.5355 -2.2506 1.4681 36 1 2.0027 -2.9052 3.5445 37 1 4.0587 -1.2101 3.6646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819200850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:40 Heat of formation + Delta-G solvation = 128.630452 kcal Electronic energy + Delta-G solvation = -21794.607861 eV Core-core repulsion = 18383.093621 eV Total energy + Delta-G solvation = -3411.514239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32584 -40.01427 -38.82645 -35.48578 -34.21679 -33.20284 -30.58950 -30.23549 -29.88202 -28.57968 -27.19237 -24.86657 -23.48551 -21.22086 -21.13378 -20.57007 -19.69897 -19.46207 -17.78237 -17.19100 -16.38600 -15.60648 -15.46710 -15.31484 -14.90464 -14.64154 -14.04336 -13.86579 -13.69866 -13.27928 -13.10793 -12.90290 -12.86363 -12.72702 -11.97093 -11.70699 -11.56674 -11.45220 -11.31448 -11.24724 -10.99081 -10.75381 -10.58049 -10.19107 -9.56835 -9.25982 -9.19402 -8.84551 -8.71398 -8.09656 -6.74858 -6.58391 -4.25983 1.79872 2.33384 2.73528 2.74708 3.00372 3.02945 3.07120 3.58357 3.63665 3.86466 4.33828 4.40346 4.56314 4.67644 4.73436 4.87545 4.99421 4.99826 5.22160 5.28691 5.33998 5.53012 5.60272 5.69015 5.83775 5.89303 6.14697 6.20786 6.40985 6.54328 6.85412 6.91349 6.93134 7.07079 7.20468 7.62983 7.82310 8.10483 8.23997 8.57814 8.77802 9.34348 9.63504 10.37549 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.059017 B = 0.002683 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.326112 B =10434.158272 C =10632.662596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.113 0.887 4 C -0.149 4.149 5 C 0.504 3.496 6 O -0.535 6.535 7 N -0.621 5.621 8 C -0.063 4.063 9 C -0.032 4.032 10 N -0.261 5.261 11 N -0.142 5.142 12 C -0.324 4.324 13 H 0.116 0.884 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.267 1.267 20 C -0.084 4.084 21 N -0.363 5.363 22 C 0.056 3.944 23 C -0.281 4.281 24 C 0.039 3.961 25 N -0.297 5.297 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.177 0.823 33 H 0.276 0.724 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 -10.874 14.633 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.131 0.869 4 C -0.190 4.190 5 C 0.290 3.710 6 O -0.413 6.413 7 N -0.262 5.262 8 C -0.168 4.168 9 C -0.208 4.208 10 N -0.092 5.092 11 N 0.091 4.909 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.191 1.191 20 C -0.235 4.235 21 N -0.145 5.145 22 C -0.091 4.091 23 C -0.311 4.311 24 C -0.147 4.147 25 N -0.118 5.118 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.230 0.770 32 H 0.193 0.807 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.026 -7.941 13.170 15.512 hybrid contribution 0.411 -2.008 0.131 2.054 sum 2.437 -9.950 13.300 16.788 Atomic orbital electron populations 1.22335 0.92014 1.02898 1.05313 1.20980 0.95378 0.97036 0.79203 0.86908 1.21997 1.03743 1.00532 0.92753 1.19931 0.81112 0.86197 0.83781 1.90584 1.40377 1.24432 1.85882 1.42481 1.54167 1.25382 1.04192 1.17265 1.15165 0.99674 0.84699 1.24112 1.03886 0.96272 0.96501 1.78263 1.19891 1.12447 0.98598 1.44546 1.29178 1.12006 1.05173 1.19832 1.37835 1.10887 0.77036 0.86658 1.25645 0.95222 0.94895 1.01345 1.70203 1.25058 1.07824 1.36531 0.85892 0.79182 0.78561 0.80501 1.19144 1.20111 1.19148 1.21267 1.12850 0.99934 0.89457 1.49049 1.18947 1.23977 1.22574 1.22526 0.99892 0.91222 0.95439 1.21490 0.99578 1.06629 1.03354 1.23877 0.99375 0.94153 0.97309 1.77408 1.02811 1.23913 1.07646 0.87401 0.92275 0.91811 0.88398 0.88667 0.76954 0.80669 0.91372 0.83730 0.81181 0.83790 0.80283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 8.58 37.16 0.32 -1.49 16 2 C 0.18 2.08 3.05 -67.92 -0.21 1.88 16 3 H 0.11 1.55 7.96 -51.93 -0.41 1.14 16 4 C -0.15 -1.69 5.50 -27.88 -0.15 -1.84 16 5 C 0.50 7.99 7.52 -10.99 -0.08 7.90 16 6 O -0.53 -10.26 11.12 5.54 0.06 -10.20 16 7 N -0.62 -10.40 5.47 -10.00 -0.05 -10.45 16 8 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 9 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16 10 N -0.26 -7.50 10.40 30.80 0.32 -7.18 16 11 N -0.14 -3.85 3.74 -11.41 -0.04 -3.89 16 12 C -0.32 -8.49 10.25 -14.81 -0.15 -8.64 16 13 H 0.12 2.69 7.83 -52.48 -0.41 2.28 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 15 N -0.77 -21.39 11.81 55.50 0.66 -20.73 16 16 Si 0.93 18.76 29.55 -169.99 -5.02 13.74 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 C -0.08 -1.95 11.49 -16.39 -0.19 -2.13 16 21 N -0.36 -4.27 3.53 -54.86 -0.19 -4.47 16 22 C 0.06 0.54 10.59 -17.22 -0.18 0.36 16 23 C -0.28 -2.61 10.80 -40.01 -0.43 -3.04 16 24 C 0.04 0.40 12.03 -17.36 -0.21 0.20 16 25 N -0.30 -3.92 12.58 30.63 0.39 -3.53 16 26 H 0.11 1.43 5.95 -51.93 -0.31 1.12 16 27 H 0.06 0.52 7.15 -51.93 -0.37 0.14 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.40 5.10 8.83 -40.82 -0.36 4.74 16 32 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 33 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 35 H 0.17 1.14 7.26 -52.49 -0.38 0.76 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -33.77 320.36 -5.44 -39.21 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.23 Total: 11.41 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.15 Total: -8.72 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 1.07 Total: -50.26 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.06 Total: -10.20 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.77 -5.44 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819200850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.838 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds