Wall clock time and date at job start Tue Mar 31 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 5 5 C 1.50700 * 109.47081 * 65.00449 * 4 2 1 6 6 O 1.21300 * 119.99989 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99975 * 179.97438 * 5 4 2 8 8 C 1.40590 * 120.00115 * 179.97438 * 7 5 4 9 9 C 1.40647 * 126.08039 * 359.69292 * 8 7 5 10 10 N 1.30911 * 108.38570 * 179.81415 * 9 8 7 11 11 N 1.40071 * 108.40609 * 0.44449 * 10 9 8 12 12 C 1.37322 * 126.06766 * 179.69948 * 11 10 9 13 13 H 1.08008 * 119.99992 * 180.02562 * 12 11 10 14 14 C 1.38990 * 120.00205 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99844 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47052 * 59.99928 * 16 14 12 18 18 H 1.48500 * 109.46769 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47103 * 299.99593 * 16 14 12 20 20 C 1.35685 * 126.08377 * 179.97438 * 8 7 5 21 21 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 22 22 C 1.34949 * 126.03877 * 34.99818 * 21 2 1 23 23 C 1.35315 * 107.74402 * 179.97438 * 22 21 2 24 24 C 1.39871 * 107.92270 * 359.97438 * 23 22 21 25 25 N 1.30845 * 108.20111 * 359.74327 * 24 23 22 26 26 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 27 27 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 29 29 H 1.09005 * 109.46847 * 185.00328 * 4 2 1 30 30 H 1.08999 * 109.47369 * 305.00095 * 4 2 1 31 31 H 0.97010 * 119.99836 * 0.02562 * 7 5 4 32 32 H 1.07992 * 125.80840 * 359.95806 * 9 8 7 33 33 H 0.96992 * 119.99681 * 179.97438 * 15 14 12 34 34 H 1.08005 * 126.24571 * 359.97438 * 20 8 7 35 35 H 1.08000 * 126.12550 * 359.95246 * 22 21 2 36 36 H 1.07999 * 126.04090 * 179.97438 * 23 22 21 37 37 H 1.07998 * 125.89940 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0871 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.6131 0.3343 -4.8452 9 6 0.8797 1.5343 -4.8631 10 7 0.7328 1.9099 -6.1085 11 7 1.3551 0.9632 -6.9323 12 6 1.4139 0.9990 -8.3038 13 1 1.9215 0.2130 -8.8433 14 6 0.8201 2.0468 -8.9977 15 7 0.2034 3.0025 -8.3419 16 14 0.8995 2.0950 -10.8634 17 1 0.2471 0.8819 -11.4182 18 1 0.1961 3.3059 -11.3575 19 1 2.3190 2.1361 -11.2975 20 6 1.8927 -0.0011 -6.1298 21 7 2.0183 -0.6907 1.1962 22 6 1.4402 -1.7559 1.7896 23 6 2.1967 -2.0930 2.8596 24 6 3.2745 -1.2036 2.9221 25 7 3.1717 -0.3662 1.9220 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7996 -1.2055 30 1 1.6054 -1.7199 -1.2951 31 1 2.4893 -1.2155 -3.7907 32 1 0.5040 2.0581 -3.9967 33 1 -0.2106 3.7338 -8.8262 34 1 2.4409 -0.8720 -6.4576 35 1 0.5355 -2.2506 1.4681 36 1 2.0027 -2.9052 3.5445 37 1 4.0587 -1.2101 3.6646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819200850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:40 Heat of formation + Delta-G solvation = 105.120865 kcal Electronic energy + Delta-G solvation = -21795.627313 eV Core-core repulsion = 18383.093621 eV Total energy + Delta-G solvation = -3412.533692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14928 -41.67738 -40.36394 -36.54947 -35.76616 -34.96819 -32.28513 -31.36415 -30.74316 -29.91726 -28.58931 -26.68811 -24.45568 -22.89900 -22.03568 -21.91332 -21.19511 -20.65737 -19.37065 -18.33425 -17.64872 -17.33926 -16.85044 -16.63329 -16.05336 -15.62711 -15.58369 -15.25227 -14.86293 -14.72001 -14.56023 -14.07262 -13.80926 -13.50246 -13.46508 -13.28819 -13.00430 -12.86563 -12.78095 -12.45427 -12.19419 -12.14225 -11.78251 -11.54481 -10.99135 -10.83366 -10.67943 -10.36330 -10.09737 -9.48078 -8.52468 -8.46799 -6.23979 1.03315 1.21864 1.39335 1.47135 1.52509 1.56077 1.87149 2.02804 2.08907 2.37641 2.52951 2.93838 3.09185 3.46800 3.63954 3.90935 4.03461 4.15958 4.20788 4.44140 4.45941 4.50614 4.61760 4.76821 4.81800 4.86440 5.00440 5.00535 5.09572 5.21436 5.24142 5.30543 5.50672 5.82010 5.96048 6.18976 6.32452 6.73631 6.74776 6.85523 7.37984 7.47204 7.69292 8.52439 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.059017 B = 0.002683 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.326112 B =10434.158272 C =10632.662596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.506 3.494 6 O -0.569 6.569 7 N -0.615 5.615 8 C -0.044 4.044 9 C -0.058 4.058 10 N -0.312 5.312 11 N -0.169 5.169 12 C -0.355 4.355 13 H 0.140 0.860 14 C -0.007 4.007 15 N -0.825 5.825 16 Si 1.019 2.981 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.254 1.254 20 C -0.082 4.082 21 N -0.374 5.374 22 C 0.055 3.945 23 C -0.283 4.283 24 C 0.036 3.964 25 N -0.347 5.347 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.420 0.580 32 H 0.171 0.829 33 H 0.276 0.724 34 H 0.187 0.813 35 H 0.201 0.799 36 H 0.170 0.830 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -14.042 15.095 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.101 0.899 4 C -0.171 4.171 5 C 0.293 3.707 6 O -0.448 6.448 7 N -0.260 5.260 8 C -0.150 4.150 9 C -0.234 4.234 10 N -0.144 5.144 11 N 0.062 4.938 12 C -0.486 4.486 13 H 0.158 0.842 14 C -0.219 4.219 15 N -0.453 5.453 16 Si 0.837 3.163 17 H -0.176 1.176 18 H -0.204 1.204 19 H -0.178 1.178 20 C -0.232 4.232 21 N -0.156 5.156 22 C -0.091 4.091 23 C -0.312 4.312 24 C -0.149 4.149 25 N -0.168 5.168 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.257 0.743 32 H 0.187 0.813 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.218 0.782 36 H 0.188 0.812 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.868 -11.166 13.676 17.887 hybrid contribution 0.198 -1.106 0.245 1.150 sum 3.066 -12.272 13.922 18.810 Atomic orbital electron populations 1.22229 0.91299 1.04284 1.04005 1.20779 0.95834 0.95813 0.79894 0.89890 1.21896 1.04446 1.01038 0.89671 1.20774 0.79593 0.85774 0.84551 1.90590 1.41591 1.26204 1.86431 1.42447 1.54721 1.25954 1.02879 1.17322 1.12811 0.98437 0.86447 1.24207 1.05338 0.98063 0.95753 1.78152 1.21750 1.14534 0.99959 1.44827 1.30397 1.12797 1.05815 1.20566 1.38669 1.12107 0.77257 0.84234 1.26875 0.94060 0.93937 1.06978 1.70390 1.27022 1.09025 1.38910 0.84661 0.79697 0.78724 0.73182 1.17649 1.20366 1.17806 1.22020 1.11793 1.00123 0.89287 1.48954 1.19193 1.24830 1.22650 1.23121 1.00570 0.90289 0.95135 1.21873 0.98872 1.06907 1.03593 1.24433 1.00159 0.93486 0.96830 1.77377 1.04289 1.25853 1.09313 0.90119 0.89481 0.91671 0.87368 0.85173 0.74280 0.81262 0.91430 0.79611 0.78183 0.81232 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.58 71.98 0.62 -2.65 16 2 C 0.18 4.06 3.05 44.99 0.14 4.20 16 3 H 0.08 2.36 7.96 -2.39 -0.02 2.34 16 4 C -0.13 -2.63 5.50 29.85 0.16 -2.47 16 5 C 0.51 15.48 7.52 87.66 0.66 16.14 16 6 O -0.57 -22.28 11.12 -3.09 -0.03 -22.32 16 7 N -0.62 -19.53 5.47 -303.93 -1.66 -21.19 16 8 C -0.04 -1.95 6.90 37.73 0.26 -1.69 16 9 C -0.06 -3.11 10.85 85.42 0.93 -2.18 16 10 N -0.31 -18.70 10.40 -56.47 -0.59 -19.29 16 11 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 12 C -0.36 -18.72 10.25 84.01 0.86 -17.86 16 13 H 0.14 6.35 7.83 -2.91 -0.02 6.32 16 14 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 15 N -0.83 -47.74 11.81 21.66 0.26 -47.48 16 16 Si 1.02 38.47 29.55 68.60 2.03 40.50 16 17 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 18 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 20 C -0.08 -3.71 11.49 83.38 0.96 -2.76 16 21 N -0.37 -8.10 3.53 -327.47 -1.15 -9.25 16 22 C 0.05 0.87 10.59 83.54 0.88 1.76 16 23 C -0.28 -4.35 10.80 21.99 0.24 -4.12 16 24 C 0.04 0.68 12.03 85.24 1.03 1.71 16 25 N -0.35 -8.77 12.58 -57.02 -0.72 -9.49 16 26 H 0.08 2.15 5.95 -2.39 -0.01 2.13 16 27 H 0.09 1.25 7.15 -2.39 -0.02 1.24 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.42 9.44 8.83 -92.70 -0.82 8.62 16 32 H 0.17 9.04 5.92 -2.91 -0.02 9.02 16 33 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.19 6.60 8.06 -2.91 -0.02 6.57 16 35 H 0.20 1.78 7.26 -2.91 -0.02 1.76 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -78.37 320.36 4.91 -73.46 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.29 Total: 34.94 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 7.20 Total: -9.82 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -4.57 Total: -116.75 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.03 Total: -22.32 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -78.37 4.91 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819200850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.581 kcal (2) G-P(sol) polarization free energy of solvation -78.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds