Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46695 * 2 1 4 4 C 1.47196 * 109.47449 * 119.99841 * 2 1 3 5 5 C 2.64594 * 109.47419 * 120.00049 * 2 1 3 6 6 C 4.07793 * 109.47380 * 120.00045 * 2 1 3 7 7 O 1.21635 * 119.99956 * 73.94562 * 6 5 4 8 8 N 1.34772 * 120.00265 * 253.94477 * 6 5 4 9 9 C 1.46500 * 119.99767 * 5.69497 * 8 6 5 10 10 C 1.50697 * 109.47627 * 270.00223 * 9 8 6 11 11 H 1.08001 * 119.99897 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00116 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00281 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99952 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47230 * 60.00279 * 14 12 10 16 16 H 1.48504 * 109.47327 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47204 * 300.00216 * 14 12 10 18 18 C 1.39935 * 120.00326 * 185.70245 * 8 6 5 19 19 C 1.38880 * 120.04396 * 237.03450 * 18 8 6 20 20 C 1.38113 * 119.94894 * 179.74165 * 19 18 8 21 21 C 1.38481 * 120.04845 * 0.50731 * 20 19 18 22 22 F 1.35095 * 119.95290 * 179.74415 * 21 20 19 23 23 C 1.38481 * 120.09218 * 359.76449 * 21 20 19 24 24 C 1.38108 * 120.04981 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.47562 * 299.99615 * 1 2 3 26 26 H 1.09001 * 109.47609 * 59.99887 * 1 2 3 27 27 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47238 * 240.00755 * 2 1 3 29 29 H 1.09000 * 109.46788 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47093 * 299.99982 * 3 2 1 31 31 H 1.08996 * 109.46661 * 60.00401 * 3 2 1 32 32 H 1.09003 * 109.47225 * 30.00434 * 9 8 6 33 33 H 1.09004 * 109.47097 * 149.99780 * 9 8 6 34 34 H 0.97000 * 120.00359 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.02577 * 359.97438 * 19 18 8 36 36 H 1.07995 * 119.97667 * 180.25283 * 20 19 18 37 37 H 1.08005 * 119.97624 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.02372 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6938 1.2018 5 6 2.4121 -1.2473 2.1603 6 6 2.8894 -1.9224 3.3296 7 8 3.3316 -3.0521 3.2416 8 7 2.8489 -1.3060 4.5274 9 6 2.2037 0.0030 4.6560 10 6 3.2193 1.0897 4.4138 11 1 4.2429 0.8312 4.1863 12 6 2.8415 2.4139 4.4816 13 7 1.5949 2.7288 4.7581 14 14 4.1002 3.7609 4.1806 15 1 4.6613 3.6175 2.8132 16 1 3.4462 5.0878 4.3112 17 1 5.1940 3.6483 5.1788 18 6 3.4231 -1.9162 5.6481 19 6 2.6527 -2.1620 6.7772 20 6 3.2202 -2.7692 7.8803 21 6 4.5589 -3.1233 7.8649 22 9 5.1132 -3.7124 8.9469 23 6 5.3302 -2.8739 6.7422 24 6 4.7655 -2.2718 5.6350 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 1.4010 0.0861 3.9233 33 1 1.7917 0.1079 5.6598 34 1 1.3292 3.6604 4.8062 35 1 1.6098 -1.8821 6.7912 36 1 2.6205 -2.9644 8.7570 37 1 6.3742 -3.1504 6.7325 38 1 5.3676 -2.0771 4.7597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826883488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -10.906721 kcal Electronic energy + Delta-G solvation = -22208.304119 eV Core-core repulsion = 18738.526381 eV Total energy + Delta-G solvation = -3469.777738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.62914 -40.00887 -37.89851 -36.04271 -35.10314 -32.69644 -31.54532 -30.88876 -29.18096 -27.19994 -27.00172 -24.27722 -23.38188 -22.48677 -21.99738 -20.32523 -17.68423 -17.33691 -16.85981 -16.46987 -15.89748 -15.58471 -15.30209 -14.76396 -14.49311 -14.29938 -14.17164 -13.69565 -13.30508 -13.25593 -12.88682 -12.54366 -12.35007 -12.02763 -11.96150 -11.80816 -11.58958 -11.20818 -11.19809 -11.16203 -10.85090 -10.83761 -10.37158 -9.99353 -9.90139 -9.82696 -9.57626 -8.82620 -8.81046 -8.62484 -7.63428 -6.24889 -4.31660 1.36766 1.53513 2.14532 2.84194 3.19847 3.24707 3.27989 3.66265 3.84945 4.11669 4.28382 4.52676 4.54856 5.03230 5.09319 5.09665 5.16359 5.30468 5.34893 5.53229 5.64465 5.73434 5.77835 5.84196 5.97669 6.05196 6.13935 6.18263 6.36290 6.37732 6.44083 6.55165 6.60684 6.69880 7.02556 7.06414 7.43648 7.67012 7.83253 7.92165 7.95093 8.59797 8.75705 9.34787 10.82377 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.005544 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.250061 B = 5049.016502 C = 6428.741579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.017 3.983 3 C -0.146 4.146 4 C -0.083 4.083 5 C -0.195 4.195 6 C 0.638 3.362 7 O -0.542 6.542 8 N -0.546 5.546 9 C 0.239 3.761 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.069 3.931 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.170 3.830 19 C -0.099 4.099 20 C -0.140 4.140 21 C 0.076 3.924 22 F -0.147 7.147 23 C -0.140 4.140 24 C -0.083 4.083 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -5.005 -2.708 5.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 C -0.203 4.203 4 C -0.086 4.086 5 C -0.198 4.198 6 C 0.428 3.572 7 O -0.422 6.422 8 N -0.271 5.271 9 C 0.121 3.879 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.134 4.134 13 N -0.528 5.528 14 Si 0.722 3.278 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C 0.078 3.922 19 C -0.118 4.118 20 C -0.159 4.159 21 C 0.057 3.943 22 F -0.126 7.126 23 C -0.159 4.159 24 C -0.103 4.103 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.270 -5.409 -2.694 6.048 hybrid contribution 0.764 0.952 0.111 1.225 sum 0.494 -4.457 -2.583 5.175 Atomic orbital electron populations 1.21823 0.93180 1.02311 1.02867 1.18363 0.95924 0.95238 0.90607 1.21833 1.01714 0.93909 1.02883 1.22335 0.94009 0.96157 0.96066 1.20216 1.03566 1.00587 0.95433 1.14767 0.77796 0.83853 0.80763 1.90793 1.47484 1.17846 1.86050 1.45815 1.54979 1.21371 1.04984 1.19655 0.93443 0.75803 0.99034 1.21317 0.96015 0.90513 1.49512 0.92123 1.24859 0.95429 0.98451 0.94643 1.69901 1.16182 1.18808 1.47882 0.86597 0.81429 0.80681 0.79111 1.19969 1.21001 1.20014 1.17592 0.91424 0.95321 0.87908 1.20991 1.00233 0.98190 0.92426 1.20873 0.93495 1.01816 0.99746 1.17613 0.92314 0.99979 0.84424 1.91451 1.85824 1.81961 1.53314 1.20899 1.00427 1.02154 0.92468 1.21017 0.93619 0.97641 0.98038 0.91480 0.91656 0.92400 0.89114 0.92187 0.91973 0.90902 0.93729 0.93809 0.92388 0.84650 0.84720 0.84836 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.15 37.15 0.34 -1.40 16 2 C 0.02 0.23 3.30 -93.41 -0.31 -0.08 16 3 C -0.15 -2.04 9.15 37.16 0.34 -1.70 16 4 C -0.08 -1.53 12.56 -37.12 -0.47 -2.00 16 5 C -0.20 -4.11 11.75 -38.84 -0.46 -4.57 16 6 C 0.64 14.15 7.31 -14.34 -0.10 14.04 16 7 O -0.54 -12.65 16.49 5.25 0.09 -12.56 16 8 N -0.55 -11.88 2.56 -117.42 -0.30 -12.18 16 9 C 0.24 5.67 4.83 -5.20 -0.03 5.65 16 10 C -0.54 -13.82 9.36 -34.44 -0.32 -14.15 16 11 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 12 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -23.84 13.29 55.43 0.74 -23.11 16 14 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 C 0.17 3.36 5.14 -83.69 -0.43 2.93 16 19 C -0.10 -1.70 9.32 -39.39 -0.37 -2.07 16 20 C -0.14 -2.13 10.02 -39.54 -0.40 -2.53 16 21 C 0.08 1.20 7.30 -39.40 -0.29 0.91 16 22 F -0.15 -2.23 17.26 2.25 0.04 -2.19 16 23 C -0.14 -2.22 10.02 -39.54 -0.40 -2.62 16 24 C -0.08 -1.53 8.98 -39.39 -0.35 -1.88 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 1.11 7.02 -51.93 -0.36 0.75 16 33 H 0.04 1.07 7.36 -51.93 -0.38 0.69 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.14 2.17 7.84 -52.49 -0.41 1.76 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -28.89 343.60 -7.54 -36.44 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.93 Total: 0.91 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.33 Total: -7.75 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.44 Total: -35.28 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.89 -7.54 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826883488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.531 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds