Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46695 * 2 1 4 4 C 1.47196 * 109.47449 * 119.99841 * 2 1 3 5 5 C 2.64594 * 109.47419 * 120.00049 * 2 1 3 6 6 C 4.07793 * 109.47380 * 120.00045 * 2 1 3 7 7 O 1.21635 * 119.99956 * 73.94562 * 6 5 4 8 8 N 1.34772 * 120.00265 * 253.94477 * 6 5 4 9 9 C 1.46500 * 119.99767 * 5.69497 * 8 6 5 10 10 C 1.50697 * 109.47627 * 270.00223 * 9 8 6 11 11 H 1.08001 * 119.99897 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00116 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00281 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99952 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47230 * 60.00279 * 14 12 10 16 16 H 1.48504 * 109.47327 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47204 * 300.00216 * 14 12 10 18 18 C 1.39935 * 120.00326 * 185.70245 * 8 6 5 19 19 C 1.38880 * 120.04396 * 237.03450 * 18 8 6 20 20 C 1.38113 * 119.94894 * 179.74165 * 19 18 8 21 21 C 1.38481 * 120.04845 * 0.50731 * 20 19 18 22 22 F 1.35095 * 119.95290 * 179.74415 * 21 20 19 23 23 C 1.38481 * 120.09218 * 359.76449 * 21 20 19 24 24 C 1.38108 * 120.04981 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.47562 * 299.99615 * 1 2 3 26 26 H 1.09001 * 109.47609 * 59.99887 * 1 2 3 27 27 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47238 * 240.00755 * 2 1 3 29 29 H 1.09000 * 109.46788 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47093 * 299.99982 * 3 2 1 31 31 H 1.08996 * 109.46661 * 60.00401 * 3 2 1 32 32 H 1.09003 * 109.47225 * 30.00434 * 9 8 6 33 33 H 1.09004 * 109.47097 * 149.99780 * 9 8 6 34 34 H 0.97000 * 120.00359 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.02577 * 359.97438 * 19 18 8 36 36 H 1.07995 * 119.97667 * 180.25283 * 20 19 18 37 37 H 1.08005 * 119.97624 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.02372 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6938 1.2018 5 6 2.4121 -1.2473 2.1603 6 6 2.8894 -1.9224 3.3296 7 8 3.3316 -3.0521 3.2416 8 7 2.8489 -1.3060 4.5274 9 6 2.2037 0.0030 4.6560 10 6 3.2193 1.0897 4.4138 11 1 4.2429 0.8312 4.1863 12 6 2.8415 2.4139 4.4816 13 7 1.5949 2.7288 4.7581 14 14 4.1002 3.7609 4.1806 15 1 4.6613 3.6175 2.8132 16 1 3.4462 5.0878 4.3112 17 1 5.1940 3.6483 5.1788 18 6 3.4231 -1.9162 5.6481 19 6 2.6527 -2.1620 6.7772 20 6 3.2202 -2.7692 7.8803 21 6 4.5589 -3.1233 7.8649 22 9 5.1132 -3.7124 8.9469 23 6 5.3302 -2.8739 6.7422 24 6 4.7655 -2.2718 5.6350 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 1.4010 0.0861 3.9233 33 1 1.7917 0.1079 5.6598 34 1 1.3292 3.6604 4.8062 35 1 1.6098 -1.8821 6.7912 36 1 2.6205 -2.9644 8.7570 37 1 6.3742 -3.1504 6.7325 38 1 5.3676 -2.0771 4.7597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826883488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -24.282750 kcal Electronic energy + Delta-G solvation = -22208.884147 eV Core-core repulsion = 18738.526381 eV Total energy + Delta-G solvation = -3470.357766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88226 -41.59801 -39.37219 -37.27554 -36.81431 -34.64502 -32.98074 -32.21700 -30.70646 -29.04770 -28.04689 -25.82761 -25.09377 -23.93760 -23.29268 -21.73937 -19.19285 -18.83098 -18.65003 -18.15367 -17.35696 -16.95208 -16.56077 -16.43843 -16.05794 -15.75013 -15.47583 -15.17698 -14.59020 -14.53922 -14.30032 -14.18750 -13.87798 -13.60545 -13.28289 -13.08377 -13.06464 -12.88732 -12.69516 -12.36548 -12.30409 -12.23292 -12.19785 -11.85729 -11.54386 -11.27923 -11.06964 -10.64479 -10.40951 -10.13948 -9.18828 -8.24803 -6.39089 -0.04106 0.21276 0.56890 1.29838 1.38650 1.39928 1.47657 2.09523 2.36576 2.40518 2.60818 3.05828 3.08776 3.22880 3.73751 3.87008 4.06222 4.13470 4.19234 4.20730 4.34076 4.36340 4.50680 4.80534 4.84154 4.88428 4.94017 4.95948 5.00433 5.06564 5.08859 5.09911 5.32745 5.35395 5.40050 5.54924 5.64239 5.91132 5.95116 6.18397 6.32367 6.66294 6.97170 7.30896 8.81329 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.005544 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.250061 B = 5049.016502 C = 6428.741579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.011 3.989 3 C -0.143 4.143 4 C -0.052 4.052 5 C -0.262 4.262 6 C 0.634 3.366 7 O -0.565 6.565 8 N -0.545 5.545 9 C 0.258 3.742 10 C -0.546 4.546 11 H 0.048 0.952 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.274 1.274 18 C 0.131 3.869 19 C -0.105 4.105 20 C -0.128 4.128 21 C 0.080 3.920 22 F -0.139 7.139 23 C -0.133 4.133 24 C -0.099 4.099 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.128 0.872 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.270 0.730 35 H 0.142 0.858 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -4.630 -3.153 5.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.007 4.007 3 C -0.200 4.200 4 C -0.055 4.055 5 C -0.264 4.264 6 C 0.425 3.575 7 O -0.446 6.446 8 N -0.270 5.270 9 C 0.138 3.862 10 C -0.585 4.585 11 H 0.066 0.934 12 C -0.170 4.170 13 N -0.552 5.552 14 Si 0.775 3.225 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.200 1.200 18 C 0.039 3.961 19 C -0.125 4.125 20 C -0.147 4.147 21 C 0.061 3.939 22 F -0.117 7.117 23 C -0.152 4.152 24 C -0.119 4.119 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.056 -5.041 -3.121 5.930 hybrid contribution 0.688 0.803 0.262 1.089 sum 0.632 -4.238 -2.859 5.151 Atomic orbital electron populations 1.21823 0.91470 1.02943 1.03486 1.18828 0.97232 0.94962 0.89666 1.21823 1.01162 0.93853 1.03159 1.23507 0.91599 0.94301 0.96049 1.20447 1.06256 1.03049 0.96685 1.14974 0.77492 0.83748 0.81268 1.90740 1.48805 1.18651 1.86434 1.45691 1.54854 1.20689 1.05742 1.19242 0.92655 0.76633 0.97623 1.21437 0.95736 0.91489 1.49807 0.93389 1.25522 0.97047 1.00218 0.94241 1.69981 1.17503 1.19396 1.48311 0.85727 0.79297 0.78426 0.79072 1.19416 1.20043 1.19951 1.18010 0.92543 0.97253 0.88260 1.21130 1.00547 0.98532 0.92295 1.21175 0.93650 0.99973 0.99899 1.17681 0.92476 0.99362 0.84412 1.91478 1.85718 1.81708 1.52828 1.21122 1.01757 1.00812 0.91516 1.21026 0.93216 0.98829 0.98781 0.93769 0.88104 0.91828 0.85438 0.93064 0.88034 0.94210 0.95492 0.94771 0.92096 0.84045 0.81371 0.82097 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.15 71.98 0.66 -2.44 16 2 C 0.01 0.28 3.30 -12.60 -0.04 0.24 16 3 C -0.14 -3.77 9.15 71.99 0.66 -3.11 16 4 C -0.05 -1.94 12.56 31.12 0.39 -1.55 16 5 C -0.26 -11.50 11.75 30.02 0.35 -11.15 16 6 C 0.63 29.65 7.31 85.49 0.62 30.28 16 7 O -0.56 -27.64 16.49 -4.14 -0.07 -27.71 16 8 N -0.55 -24.91 2.56 -643.65 -1.65 -26.56 16 9 C 0.26 12.82 4.83 85.63 0.41 13.23 16 10 C -0.55 -29.10 9.36 25.60 0.24 -28.86 16 11 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 12 C 0.03 1.62 5.46 84.65 0.46 2.08 16 13 N -0.91 -49.56 13.29 21.44 0.28 -49.27 16 14 Si 0.95 41.58 29.54 68.60 2.03 43.61 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 16 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 C 0.13 5.34 5.14 38.15 0.20 5.54 16 19 C -0.11 -3.65 9.32 22.39 0.21 -3.44 16 20 C -0.13 -3.68 10.02 22.30 0.22 -3.46 16 21 C 0.08 2.36 7.30 22.39 0.16 2.53 16 22 F -0.14 -3.83 17.26 44.97 0.78 -3.05 16 23 C -0.13 -4.08 10.02 22.30 0.22 -3.86 16 24 C -0.10 -3.70 8.98 22.39 0.20 -3.50 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.03 1.42 7.02 -2.39 -0.02 1.41 16 33 H 0.03 1.74 7.36 -2.38 -0.02 1.73 16 34 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.14 4.61 7.84 -2.91 -0.02 4.58 16 36 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -64.18 343.60 7.41 -56.77 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.06 Total: 13.68 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.98 Total: -7.46 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.36 Total: -75.83 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.07 Total: -27.71 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -64.18 7.41 -56.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826883488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.488 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds