Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.89895 * 56.13869 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12 16 16 C 1.38265 * 119.97824 * 269.72983 * 15 14 13 17 17 C 1.38299 * 120.03467 * 179.78347 * 16 15 14 18 18 C 1.37970 * 119.92156 * 0.47040 * 17 16 15 19 19 C 1.38594 * 120.03941 * 359.78082 * 18 17 16 20 20 C 1.37970 * 120.03785 * 359.97438 * 19 18 17 21 21 C 1.51078 * 107.27411 * 179.97438 * 19 18 17 22 22 O 1.43949 * 105.95227 * 17.69050 * 21 19 18 23 23 C 1.43938 * 104.94694 * 331.55126 * 22 21 19 24 24 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 25 25 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 26 26 H 0.96696 * 113.99639 * 303.86461 * 10 9 7 27 27 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 28 28 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 29 29 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 30 30 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 31 31 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 32 32 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 33 33 H 1.07995 * 119.98146 * 359.97438 * 16 15 14 34 34 H 1.08002 * 120.03778 * 180.24739 * 17 16 15 35 35 H 1.08005 * 120.03892 * 179.97438 * 20 19 18 36 36 H 1.09004 * 110.15298 * 136.80679 * 21 19 18 37 37 H 1.08994 * 110.15768 * 258.56576 * 21 19 18 38 38 H 1.09006 * 110.15162 * 147.56893 * 23 22 21 39 39 H 1.08997 * 110.15824 * 269.24990 * 23 22 21 40 40 H 1.09002 * 110.37464 * 94.73346 * 24 13 12 41 41 H 1.08999 * 110.37318 * 216.96123 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3514 -2.5685 -1.1088 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5740 -6.9438 1.7634 16 6 0.8724 -6.9818 2.9543 17 6 0.1716 -8.1201 3.3088 18 6 0.1814 -9.2212 2.4775 19 6 0.8889 -9.1849 1.2863 20 6 1.5839 -8.0474 0.9302 21 6 0.7044 -10.5251 0.6138 22 8 -0.4399 -11.1297 1.2440 23 6 -0.4612 -10.5849 2.5762 24 6 2.2260 -3.7029 -0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2783 -1.8358 -1.1506 27 1 -0.4934 -2.2583 1.3035 28 1 1.0714 -2.3069 2.1767 29 1 -0.5822 -4.5766 1.0863 30 1 0.5352 -4.5599 2.4793 31 1 3.1988 -5.9768 0.7738 32 1 2.6664 -5.1836 2.2757 33 1 0.8691 -6.1209 3.6064 34 1 -0.3797 -8.1484 4.2371 35 1 2.1356 -8.0192 0.0021 36 1 0.5179 -10.3883 -0.4514 37 1 1.5877 -11.1457 0.7644 38 1 -1.4889 -10.4913 2.9273 39 1 0.1094 -11.2221 3.2517 40 1 3.1047 -3.4798 0.6040 41 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -54.055797 kcal Electronic energy + Delta-G solvation = -22854.486230 eV Core-core repulsion = 19506.297712 eV Total energy + Delta-G solvation = -3348.188517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73383 -38.68634 -37.32072 -34.76492 -32.16456 -32.01261 -31.52499 -29.56613 -28.11472 -27.92097 -25.97441 -24.33942 -23.58867 -21.77604 -20.85211 -19.83934 -19.51997 -17.12232 -16.67310 -16.46874 -16.19417 -15.42018 -14.97531 -14.91529 -14.63896 -14.36232 -14.08871 -13.74346 -13.37234 -12.95344 -12.73826 -12.55270 -12.44745 -12.31283 -11.93447 -11.67928 -11.29495 -11.26065 -11.19001 -10.98341 -10.82115 -10.64584 -10.43129 -10.29606 -10.16274 -9.88408 -9.25973 -8.84289 -8.62647 -8.48722 -8.06219 -7.63187 -6.24706 -4.32809 1.19788 1.34590 3.18630 3.27571 3.31281 3.60163 3.77604 4.11897 4.26707 4.52372 4.73115 4.88314 4.98366 5.05900 5.16557 5.17742 5.24630 5.37720 5.40137 5.46681 5.62992 5.65640 5.79856 5.92196 5.97375 6.03890 6.09313 6.15599 6.21800 6.31679 6.45244 6.57131 6.64690 6.66942 6.84804 6.92034 7.04437 7.40616 7.44479 7.60012 7.72718 7.80727 8.11729 8.69514 9.36580 9.60514 10.82452 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040028 B = 0.003236 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.338628 B = 8649.540586 C = 8721.287516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.253 3.747 10 O -0.580 6.580 11 C -0.148 4.148 12 C 0.045 3.955 13 N -0.521 5.521 14 C 0.085 3.915 15 C -0.056 4.056 16 C -0.108 4.108 17 C -0.093 4.093 18 C -0.143 4.143 19 C -0.136 4.136 20 C -0.073 4.073 21 C 0.093 3.907 22 O -0.364 6.364 23 C 0.094 3.906 24 C 0.058 3.942 25 H 0.267 0.733 26 H 0.382 0.618 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -16.167 6.412 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.213 3.787 10 O -0.390 6.390 11 C -0.187 4.187 12 C -0.082 4.082 13 N -0.245 5.245 14 C -0.043 4.043 15 C -0.056 4.056 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.143 4.143 19 C -0.136 4.136 20 C -0.091 4.091 21 C 0.016 3.984 22 O -0.283 6.283 23 C 0.017 3.983 24 C -0.069 4.069 25 H 0.077 0.923 26 H 0.233 0.767 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.487 -17.054 5.794 18.073 hybrid contribution 0.567 2.172 1.011 2.462 sum 2.054 -14.882 6.805 16.492 Atomic orbital electron populations 1.69596 1.05975 1.27429 1.50657 1.25011 0.94988 0.99492 0.93669 0.86403 0.80097 0.82975 0.77711 1.19672 1.20739 1.20900 1.21618 0.93618 0.90722 1.51474 0.91977 1.19539 0.85858 0.90643 0.82688 1.86107 1.50885 1.52517 1.49458 1.23339 1.02435 0.92108 1.00857 1.22859 0.95294 0.96144 0.93935 1.63659 1.11382 1.18727 1.30699 1.21208 0.94786 0.91330 0.96985 1.19847 0.97282 0.94917 0.93579 1.21108 0.97007 0.97596 0.96908 1.20300 0.99743 0.91837 0.99276 1.20943 1.00706 0.96293 0.96367 1.20960 0.99582 0.96163 0.96890 1.20239 0.98842 0.90852 0.99189 1.21723 0.89274 0.89350 0.98015 1.89065 1.47606 1.66254 1.25329 1.21692 1.01325 0.89832 0.85433 1.23028 0.95426 0.89869 0.98597 0.92256 0.76679 0.90867 0.92709 0.91805 0.94383 0.90329 0.93998 0.85591 0.85960 0.85605 0.88488 0.90744 0.88770 0.90864 0.93553 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 10.80 55.43 0.60 -23.26 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.22 8.26 -34.44 -0.28 -14.50 16 8 H 0.06 1.63 7.77 -52.49 -0.41 1.22 16 9 C 0.25 6.28 0.89 -89.48 -0.08 6.20 16 10 O -0.58 -15.46 13.18 -35.23 -0.46 -15.93 16 11 C -0.15 -3.39 5.65 -24.75 -0.14 -3.53 16 12 C 0.05 0.89 6.26 -2.83 -0.02 0.87 16 13 N -0.52 -10.02 5.15 -232.68 -1.20 -11.22 16 14 C 0.08 1.31 4.75 -4.98 -0.02 1.29 16 15 C -0.06 -0.79 5.09 -104.59 -0.53 -1.33 16 16 C -0.11 -1.42 8.71 -39.55 -0.34 -1.76 16 17 C -0.09 -1.11 10.04 -39.66 -0.40 -1.51 16 18 C -0.14 -1.73 6.32 -104.41 -0.66 -2.39 16 19 C -0.14 -1.71 6.32 -104.40 -0.66 -2.37 16 20 C -0.07 -0.98 9.70 -39.66 -0.38 -1.36 16 21 C 0.09 0.99 7.63 36.19 0.28 1.27 16 22 O -0.36 -4.42 11.72 -35.23 -0.41 -4.83 16 23 C 0.09 0.96 7.63 36.19 0.28 1.23 16 24 C 0.06 1.24 5.85 -2.30 -0.01 1.23 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.38 10.35 6.93 45.56 0.32 10.66 16 27 H 0.07 1.79 7.85 -51.93 -0.41 1.38 16 28 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.66 5.47 -51.93 -0.28 0.37 16 31 H 0.08 1.11 8.02 -51.93 -0.42 0.70 16 32 H 0.04 0.63 7.92 -51.93 -0.41 0.22 16 33 H 0.13 1.55 6.92 -52.49 -0.36 1.18 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -28.71 330.02 -9.92 -38.63 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.31 Total: 11.14 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.08 Total: -14.90 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.60 Total: -34.48 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.88 Total: -20.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.71 -9.92 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.428 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds