Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.89895 * 56.13869 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12 16 16 C 1.38265 * 119.97824 * 269.72983 * 15 14 13 17 17 C 1.38299 * 120.03467 * 179.78347 * 16 15 14 18 18 C 1.37970 * 119.92156 * 0.47040 * 17 16 15 19 19 C 1.38594 * 120.03941 * 359.78082 * 18 17 16 20 20 C 1.37970 * 120.03785 * 359.97438 * 19 18 17 21 21 C 1.51078 * 107.27411 * 179.97438 * 19 18 17 22 22 O 1.43949 * 105.95227 * 17.69050 * 21 19 18 23 23 C 1.43938 * 104.94694 * 331.55126 * 22 21 19 24 24 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 25 25 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 26 26 H 0.96696 * 113.99639 * 303.86461 * 10 9 7 27 27 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 28 28 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 29 29 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 30 30 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 31 31 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 32 32 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 33 33 H 1.07995 * 119.98146 * 359.97438 * 16 15 14 34 34 H 1.08002 * 120.03778 * 180.24739 * 17 16 15 35 35 H 1.08005 * 120.03892 * 179.97438 * 20 19 18 36 36 H 1.09004 * 110.15298 * 136.80679 * 21 19 18 37 37 H 1.08994 * 110.15768 * 258.56576 * 21 19 18 38 38 H 1.09006 * 110.15162 * 147.56893 * 23 22 21 39 39 H 1.08997 * 110.15824 * 269.24990 * 23 22 21 40 40 H 1.09002 * 110.37464 * 94.73346 * 24 13 12 41 41 H 1.08999 * 110.37318 * 216.96123 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3514 -2.5685 -1.1088 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5740 -6.9438 1.7634 16 6 0.8724 -6.9818 2.9543 17 6 0.1716 -8.1201 3.3088 18 6 0.1814 -9.2212 2.4775 19 6 0.8889 -9.1849 1.2863 20 6 1.5839 -8.0474 0.9302 21 6 0.7044 -10.5251 0.6138 22 8 -0.4399 -11.1297 1.2440 23 6 -0.4612 -10.5849 2.5762 24 6 2.2260 -3.7029 -0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2783 -1.8358 -1.1506 27 1 -0.4934 -2.2583 1.3035 28 1 1.0714 -2.3069 2.1767 29 1 -0.5822 -4.5766 1.0863 30 1 0.5352 -4.5599 2.4793 31 1 3.1988 -5.9768 0.7738 32 1 2.6664 -5.1836 2.2757 33 1 0.8691 -6.1209 3.6064 34 1 -0.3797 -8.1484 4.2371 35 1 2.1356 -8.0192 0.0021 36 1 0.5179 -10.3883 -0.4514 37 1 1.5877 -11.1457 0.7644 38 1 -1.4889 -10.4913 2.9273 39 1 0.1094 -11.2221 3.2517 40 1 3.1047 -3.4798 0.6040 41 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -73.632403 kcal Electronic energy + Delta-G solvation = -22855.335135 eV Core-core repulsion = 19506.297712 eV Total energy + Delta-G solvation = -3349.037423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64624 -40.19548 -38.48305 -36.47420 -34.11600 -33.33789 -32.45453 -30.99706 -29.88413 -28.91912 -27.35569 -25.90109 -24.76966 -22.67112 -22.06726 -21.40423 -21.21938 -19.08415 -17.58847 -17.35034 -17.10773 -16.98538 -16.91802 -16.23451 -16.04121 -15.77407 -15.25473 -15.00383 -14.56441 -14.34755 -13.92845 -13.87640 -13.76428 -13.52378 -13.38368 -13.13671 -12.89641 -12.84539 -12.71872 -12.56726 -12.29640 -12.23910 -12.02857 -11.80324 -11.61561 -11.15648 -11.01743 -10.61390 -10.07527 -9.79351 -9.45309 -9.14276 -8.23706 -6.39529 0.22156 0.39418 1.38856 1.42382 1.52881 2.36832 2.60082 2.97479 3.00880 3.22062 3.31919 3.66354 3.85949 3.99331 4.02792 4.08318 4.14947 4.34448 4.38561 4.42714 4.45476 4.49048 4.56832 4.62823 4.65357 4.76307 4.78714 4.89476 4.96395 5.05427 5.11889 5.24666 5.33559 5.35531 5.46405 5.52938 5.60947 5.73475 5.78892 5.94086 5.97941 6.19049 6.26753 6.66828 7.32784 7.50687 8.82156 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040028 B = 0.003236 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.338628 B = 8649.540586 C = 8721.287516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.233 3.767 10 O -0.592 6.592 11 C -0.140 4.140 12 C 0.058 3.942 13 N -0.528 5.528 14 C 0.087 3.913 15 C -0.074 4.074 16 C -0.117 4.117 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.084 4.084 21 C 0.092 3.908 22 O -0.382 6.382 23 C 0.092 3.908 24 C 0.066 3.934 25 H 0.270 0.730 26 H 0.375 0.625 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -17.300 7.529 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.076 0.924 9 C 0.193 3.807 10 O -0.401 6.401 11 C -0.179 4.179 12 C -0.070 4.070 13 N -0.252 5.252 14 C -0.040 4.040 15 C -0.074 4.074 16 C -0.135 4.135 17 C -0.113 4.113 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.102 4.102 21 C 0.016 3.984 22 O -0.301 6.301 23 C 0.016 3.984 24 C -0.061 4.061 25 H 0.079 0.921 26 H 0.225 0.775 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.957 -18.207 6.918 19.575 hybrid contribution 0.401 2.461 0.670 2.582 sum 2.358 -15.746 7.588 17.638 Atomic orbital electron populations 1.69682 1.06975 1.28199 1.50653 1.25731 0.95812 1.02442 0.93246 0.85440 0.78951 0.79112 0.77683 1.19327 1.20571 1.20373 1.21888 0.93666 0.92031 1.52201 0.92363 1.19849 0.86344 0.91617 0.82882 1.86098 1.51096 1.52197 1.50662 1.23154 1.00634 0.94396 0.99725 1.22698 0.95141 0.93627 0.95526 1.63573 1.11847 1.17996 1.31779 1.21245 0.94707 0.91135 0.96914 1.19780 0.98429 0.94609 0.94582 1.21264 0.97087 0.98455 0.96711 1.20582 0.99305 0.91189 1.00184 1.21305 1.00254 0.97196 0.96082 1.21228 0.99374 0.96659 0.97491 1.20353 0.99338 0.91130 0.99416 1.21846 0.89728 0.88692 0.98121 1.89044 1.48227 1.66546 1.26330 1.21879 1.02425 0.88993 0.85082 1.22858 0.95087 0.89406 0.98727 0.92066 0.77467 0.93184 0.93181 0.92901 0.91706 0.89227 0.93365 0.84951 0.83390 0.85154 0.87935 0.88753 0.87378 0.88722 0.92663 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.26 10.80 21.45 0.23 -49.03 16 2 C 0.03 1.46 5.30 84.65 0.45 1.91 16 3 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.56 -29.96 8.26 25.60 0.21 -29.75 16 8 H 0.06 3.08 7.77 -2.91 -0.02 3.05 16 9 C 0.23 11.72 0.89 -10.05 -0.01 11.71 16 10 O -0.59 -32.27 13.18 -148.98 -1.96 -34.23 16 11 C -0.14 -6.46 5.65 31.88 0.18 -6.28 16 12 C 0.06 2.24 6.26 86.65 0.54 2.78 16 13 N -0.53 -19.96 5.15 -890.07 -4.59 -24.55 16 14 C 0.09 2.58 4.75 85.56 0.41 2.99 16 15 C -0.07 -1.99 5.09 -19.85 -0.10 -2.09 16 16 C -0.12 -2.85 8.71 22.29 0.19 -2.65 16 17 C -0.09 -2.02 10.04 22.22 0.22 -1.79 16 18 C -0.15 -3.24 6.32 -19.72 -0.12 -3.37 16 19 C -0.15 -3.46 6.32 -19.72 -0.12 -3.59 16 20 C -0.08 -2.15 9.70 22.22 0.22 -1.93 16 21 C 0.09 1.80 7.63 71.36 0.54 2.34 16 22 O -0.38 -8.47 11.72 -148.98 -1.75 -10.22 16 23 C 0.09 1.64 7.63 71.35 0.54 2.18 16 24 C 0.07 2.85 5.85 86.77 0.51 3.36 16 25 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 26 H 0.38 20.99 6.93 -74.06 -0.51 20.47 16 27 H 0.05 2.50 7.85 -2.38 -0.02 2.48 16 28 H 0.05 2.31 8.04 -2.38 -0.02 2.29 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.15 5.47 -2.39 -0.01 2.13 16 31 H 0.09 2.42 8.02 -2.39 -0.02 2.40 16 32 H 0.05 1.37 7.92 -2.39 -0.02 1.35 16 33 H 0.13 2.97 6.92 -2.91 -0.02 2.95 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 2.23 7.68 -2.39 -0.02 2.21 16 41 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -60.91 330.02 -1.86 -62.76 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.52 Total: 35.56 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.66 Total: -24.19 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -4.36 Total: -73.58 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -3.71 Total: -44.45 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -60.91 -1.86 -62.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.869 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds