Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48498 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46710 * 299.99995 * 3 2 1 6 6 H 1.48497 * 109.46876 * 59.99605 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50706 * 109.46840 * 54.48842 * 14 13 12 16 16 C 1.38259 * 119.98131 * 269.72562 * 15 14 13 17 17 C 1.38295 * 120.03857 * 179.78359 * 16 15 14 18 18 C 1.37966 * 119.92251 * 0.47586 * 17 16 15 19 19 C 1.38597 * 120.03468 * 359.77951 * 18 17 16 20 20 C 1.37966 * 120.04468 * 359.97438 * 19 18 17 21 21 C 1.51082 * 107.27080 * 179.97438 * 19 18 17 22 22 O 1.43941 * 105.95698 * 17.68727 * 21 19 18 23 23 C 1.43937 * 104.94983 * 331.55381 * 22 21 19 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 28 28 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 32 32 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 33 33 H 1.07994 * 119.98062 * 0.02562 * 16 15 14 34 34 H 1.08008 * 120.04055 * 180.25165 * 17 16 15 35 35 H 1.07997 * 120.04524 * 180.02562 * 20 19 18 36 36 H 1.08996 * 110.15756 * 136.80886 * 21 19 18 37 37 H 1.08996 * 110.15609 * 258.49441 * 21 19 18 38 38 H 1.09002 * 110.15522 * 147.56694 * 23 22 21 39 39 H 1.09006 * 110.15877 * 269.25435 * 23 22 21 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 41 41 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7896 -5.3972 -1.7135 15 6 2.6248 -5.7836 -3.1609 16 6 1.4533 -6.3813 -3.5873 17 6 1.2990 -6.7322 -4.9161 18 6 2.3194 -6.4942 -5.8137 19 6 3.4958 -5.8999 -5.3851 20 6 3.6478 -5.5451 -4.0605 21 6 4.4013 -5.7783 -6.5884 22 8 3.5507 -5.9263 -7.7402 23 6 2.4633 -6.7574 -7.2945 24 6 2.2333 -3.6880 -0.0709 25 1 -0.4850 0.8401 0.0004 26 1 -0.2326 -1.9035 1.2438 27 1 -0.6633 -2.7528 -1.0030 28 1 0.5050 -1.7323 -1.8944 29 1 0.3224 -4.7432 -1.7435 30 1 0.9044 -3.7076 -3.0835 31 1 3.8426 -5.4590 -1.4386 32 1 2.2103 -6.0764 -1.0880 33 1 0.6567 -6.5706 -2.8832 34 1 0.3823 -7.1955 -5.2501 35 1 4.5643 -5.0816 -3.7266 36 1 4.8817 -4.8000 -6.5996 37 1 5.1545 -6.5660 -6.5728 38 1 1.5451 -6.4857 -7.8152 39 1 2.6971 -7.8076 -7.4693 40 1 3.2133 -3.3946 0.3052 41 1 1.8462 -4.5355 0.4947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -52.481983 kcal Electronic energy + Delta-G solvation = -23014.444528 eV Core-core repulsion = 19666.324256 eV Total energy + Delta-G solvation = -3348.120272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75500 -38.70931 -37.32442 -34.87961 -32.16755 -32.06009 -31.53512 -29.62008 -28.03619 -27.80313 -25.82820 -24.33649 -23.58968 -21.79542 -20.91635 -20.03800 -19.38424 -17.01692 -16.68342 -16.46664 -16.22443 -15.58581 -14.94171 -14.84120 -14.56961 -14.39160 -13.86513 -13.77564 -13.43550 -13.12442 -12.85935 -12.66988 -12.26054 -12.14591 -12.08317 -11.69334 -11.53261 -11.17975 -10.98186 -10.92124 -10.78551 -10.51657 -10.42822 -10.28832 -10.16986 -9.90792 -9.04323 -8.86466 -8.55852 -8.54730 -8.09579 -7.81980 -6.14827 -4.20172 1.16950 1.32896 3.26286 3.34697 3.39827 3.57767 3.77525 4.10674 4.37148 4.51371 4.64819 4.85860 4.93380 5.12844 5.16716 5.18437 5.24775 5.36786 5.40291 5.46822 5.63228 5.67144 5.75439 5.87770 5.98456 6.06412 6.13816 6.19101 6.21566 6.28613 6.36220 6.51784 6.55951 6.63629 6.87099 6.89685 7.06488 7.22365 7.54484 7.66487 7.68771 7.87319 8.23342 8.82525 9.43865 9.52739 10.92775 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.003913 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.982951 B = 7153.769856 C = 7698.655733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.249 3.751 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.035 3.965 13 N -0.494 5.494 14 C 0.079 3.921 15 C -0.061 4.061 16 C -0.107 4.107 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.072 4.072 21 C 0.092 3.908 22 O -0.363 6.363 23 C 0.093 3.907 24 C 0.052 3.948 25 H 0.265 0.735 26 H 0.382 0.618 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -13.727 -10.128 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.092 4.092 13 N -0.218 5.218 14 C -0.049 4.049 15 C -0.062 4.062 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.090 4.090 21 C 0.016 3.984 22 O -0.282 6.282 23 C 0.017 3.983 24 C -0.075 4.075 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.479 -13.690 -10.514 17.833 hybrid contribution -0.615 0.809 0.464 1.118 sum 3.864 -12.881 -10.050 16.788 Atomic orbital electron populations 1.69706 1.05909 1.27159 1.51348 1.25005 0.94976 0.99408 0.94168 0.86426 0.80225 0.83171 0.77507 1.19671 1.20993 1.21004 1.21680 0.93587 0.90362 1.49964 0.91926 1.19263 0.86430 0.91516 0.81876 1.86080 1.52128 1.55768 1.46456 1.22854 0.98220 0.95610 0.99259 1.23179 0.88343 0.98179 0.99548 1.65524 1.21822 1.19375 1.15097 1.21269 1.01518 0.91004 0.91063 1.19816 0.93640 0.96835 0.95868 1.21092 0.97223 0.98728 0.95492 1.20293 0.97769 1.00631 0.92466 1.20961 0.95657 1.01239 0.96311 1.20967 0.96307 1.00911 0.95350 1.20258 0.99509 0.98504 0.90770 1.21724 0.92090 1.02757 0.81822 1.89067 1.36136 1.70977 1.32021 1.21699 0.91340 0.95079 0.90187 1.23032 1.00499 0.97472 0.86521 0.92547 0.76717 0.93140 0.90682 0.95411 0.91661 0.90009 0.94086 0.85661 0.85913 0.85442 0.88443 0.90717 0.88735 0.90840 0.90399 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.31 10.81 55.43 0.60 -23.71 16 2 C 0.07 1.75 5.02 -17.82 -0.09 1.67 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.04 8.10 -34.44 -0.28 -14.31 16 8 H 0.06 1.71 7.54 -52.49 -0.40 1.32 16 9 C 0.25 6.21 1.05 -90.39 -0.10 6.12 16 10 O -0.60 -15.51 12.94 -35.23 -0.46 -15.97 16 11 C -0.12 -2.83 5.54 -25.35 -0.14 -2.97 16 12 C 0.04 0.69 4.97 -2.09 -0.01 0.68 16 13 N -0.49 -9.54 5.48 -231.26 -1.27 -10.81 16 14 C 0.08 1.22 5.22 -4.97 -0.03 1.19 16 15 C -0.06 -0.87 4.65 -104.59 -0.49 -1.35 16 16 C -0.11 -1.39 8.40 -39.55 -0.33 -1.72 16 17 C -0.09 -1.10 10.04 -39.66 -0.40 -1.50 16 18 C -0.14 -1.71 6.32 -104.40 -0.66 -2.37 16 19 C -0.14 -1.71 6.32 -104.40 -0.66 -2.37 16 20 C -0.07 -0.96 9.70 -39.66 -0.38 -1.35 16 21 C 0.09 1.00 7.63 36.19 0.28 1.28 16 22 O -0.36 -4.46 11.72 -35.23 -0.41 -4.87 16 23 C 0.09 0.96 7.63 36.19 0.28 1.24 16 24 C 0.05 1.13 5.78 -2.18 -0.01 1.11 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.38 10.09 7.32 45.56 0.33 10.42 16 27 H 0.05 1.19 7.98 -51.93 -0.41 0.77 16 28 H 0.07 1.94 7.24 -51.93 -0.38 1.57 16 29 H 0.03 0.50 7.14 -51.93 -0.37 0.13 16 30 H 0.06 1.26 7.76 -51.93 -0.40 0.86 16 31 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 32 H 0.04 0.61 7.82 -51.93 -0.41 0.20 16 33 H 0.13 1.52 7.41 -52.49 -0.39 1.14 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.68 7.68 -51.93 -0.40 1.28 16 41 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -29.03 328.90 -9.94 -38.97 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.31 Total: 10.06 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.02 Total: -14.67 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.67 Total: -34.52 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.87 Total: -20.84 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.03 -9.94 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.510 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds