Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48498 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46710 * 299.99995 * 3 2 1 6 6 H 1.48497 * 109.46876 * 59.99605 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50706 * 109.46840 * 54.48842 * 14 13 12 16 16 C 1.38259 * 119.98131 * 269.72562 * 15 14 13 17 17 C 1.38295 * 120.03857 * 179.78359 * 16 15 14 18 18 C 1.37966 * 119.92251 * 0.47586 * 17 16 15 19 19 C 1.38597 * 120.03468 * 359.77951 * 18 17 16 20 20 C 1.37966 * 120.04468 * 359.97438 * 19 18 17 21 21 C 1.51082 * 107.27080 * 179.97438 * 19 18 17 22 22 O 1.43941 * 105.95698 * 17.68727 * 21 19 18 23 23 C 1.43937 * 104.94983 * 331.55381 * 22 21 19 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 28 28 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 32 32 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 33 33 H 1.07994 * 119.98062 * 0.02562 * 16 15 14 34 34 H 1.08008 * 120.04055 * 180.25165 * 17 16 15 35 35 H 1.07997 * 120.04524 * 180.02562 * 20 19 18 36 36 H 1.08996 * 110.15756 * 136.80886 * 21 19 18 37 37 H 1.08996 * 110.15609 * 258.49441 * 21 19 18 38 38 H 1.09002 * 110.15522 * 147.56694 * 23 22 21 39 39 H 1.09006 * 110.15877 * 269.25435 * 23 22 21 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 41 41 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7896 -5.3972 -1.7135 15 6 2.6248 -5.7836 -3.1609 16 6 1.4533 -6.3813 -3.5873 17 6 1.2990 -6.7322 -4.9161 18 6 2.3194 -6.4942 -5.8137 19 6 3.4958 -5.8999 -5.3851 20 6 3.6478 -5.5451 -4.0605 21 6 4.4013 -5.7783 -6.5884 22 8 3.5507 -5.9263 -7.7402 23 6 2.4633 -6.7574 -7.2945 24 6 2.2333 -3.6880 -0.0709 25 1 -0.4850 0.8401 0.0004 26 1 -0.2326 -1.9035 1.2438 27 1 -0.6633 -2.7528 -1.0030 28 1 0.5050 -1.7323 -1.8944 29 1 0.3224 -4.7432 -1.7435 30 1 0.9044 -3.7076 -3.0835 31 1 3.8426 -5.4590 -1.4386 32 1 2.2103 -6.0764 -1.0880 33 1 0.6567 -6.5706 -2.8832 34 1 0.3823 -7.1955 -5.2501 35 1 4.5643 -5.0816 -3.7266 36 1 4.8817 -4.8000 -6.5996 37 1 5.1545 -6.5660 -6.5728 38 1 1.5451 -6.4857 -7.8152 39 1 2.6971 -7.8076 -7.4693 40 1 3.2133 -3.3946 0.3052 41 1 1.8462 -4.5355 0.4947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -72.714387 kcal Electronic energy + Delta-G solvation = -23015.321871 eV Core-core repulsion = 19666.324256 eV Total energy + Delta-G solvation = -3348.997615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67075 -40.20839 -38.51426 -36.56647 -34.15518 -33.38079 -32.46118 -31.04105 -29.70091 -28.90477 -27.24723 -25.90153 -24.80572 -22.69668 -22.18178 -21.44826 -21.17086 -19.03716 -17.59617 -17.34003 -17.21918 -17.05104 -16.82229 -16.12847 -16.05643 -15.72405 -15.30651 -14.89466 -14.79543 -14.33988 -14.12215 -13.98903 -13.54692 -13.49841 -13.40560 -13.19659 -13.01142 -12.84886 -12.63723 -12.37640 -12.28648 -12.16178 -12.02300 -11.82772 -11.75860 -11.03545 -10.96488 -10.60180 -10.13312 -9.81825 -9.54581 -9.24275 -8.19162 -6.31587 0.19858 0.38277 1.39308 1.42538 1.53357 2.40857 2.57182 2.96796 3.03398 3.21099 3.27050 3.64989 3.79355 3.95870 3.99987 4.17118 4.28918 4.33692 4.37037 4.40477 4.44376 4.48132 4.56812 4.60312 4.64069 4.69333 4.78329 4.81977 4.94874 5.04207 5.11302 5.23642 5.31664 5.32848 5.37777 5.59220 5.66043 5.72543 5.77546 5.93689 5.97445 6.15316 6.24566 6.73483 7.36415 7.44306 8.86924 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.003913 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.982951 B = 7153.769856 C = 7698.655733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.232 3.768 10 O -0.602 6.602 11 C -0.113 4.113 12 C 0.051 3.949 13 N -0.504 5.504 14 C 0.083 3.917 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.083 4.083 21 C 0.092 3.908 22 O -0.382 6.382 23 C 0.092 3.908 24 C 0.061 3.939 25 H 0.267 0.733 26 H 0.377 0.623 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -14.813 -11.323 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.410 6.410 11 C -0.152 4.152 12 C -0.077 4.077 13 N -0.228 5.228 14 C -0.045 4.045 15 C -0.079 4.079 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.102 4.102 21 C 0.016 3.984 22 O -0.302 6.302 23 C 0.016 3.984 24 C -0.067 4.067 25 H 0.076 0.924 26 H 0.226 0.774 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.857 -14.793 -11.712 19.484 hybrid contribution -0.737 1.116 0.799 1.558 sum 4.120 -13.678 -10.914 17.977 Atomic orbital electron populations 1.69782 1.06741 1.27868 1.51243 1.25659 0.95804 1.02138 0.93784 0.85531 0.78999 0.79636 0.77578 1.19644 1.20673 1.20420 1.21901 0.93314 0.91919 1.50790 0.92994 1.19529 0.87058 0.92319 0.81898 1.86074 1.52117 1.55454 1.47348 1.22637 0.97689 0.96264 0.98612 1.22989 0.88754 0.96836 0.99115 1.65454 1.21466 1.22613 1.13303 1.21296 1.02071 0.88708 0.92392 1.19757 0.94627 0.98318 0.95177 1.21251 0.97005 0.98688 0.96343 1.20577 0.98675 1.00081 0.91897 1.21316 0.95417 1.00536 0.97424 1.21223 0.97197 1.00818 0.95504 1.20367 0.99686 0.98849 0.91265 1.21843 0.92017 1.03835 0.80742 1.89045 1.36872 1.71595 1.32641 1.21889 0.91502 0.96049 0.88982 1.22847 0.99198 0.96360 0.88249 0.92361 0.77379 0.94013 0.93819 0.93547 0.91287 0.88912 0.93199 0.84965 0.83346 0.85097 0.88024 0.88713 0.87383 0.88670 0.90905 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.99 10.81 21.45 0.23 -49.76 16 2 C 0.03 1.39 5.02 84.66 0.43 1.81 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.76 8.10 25.60 0.21 -29.56 16 8 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 9 C 0.23 11.67 1.05 -10.65 -0.01 11.66 16 10 O -0.60 -31.76 12.94 -148.98 -1.93 -33.69 16 11 C -0.11 -5.37 5.54 31.49 0.17 -5.20 16 12 C 0.05 1.95 4.97 86.42 0.43 2.38 16 13 N -0.50 -19.04 5.48 -885.57 -4.85 -23.90 16 14 C 0.08 2.41 5.22 85.56 0.45 2.85 16 15 C -0.08 -2.10 4.65 -19.84 -0.09 -2.19 16 16 C -0.11 -2.75 8.40 22.29 0.19 -2.56 16 17 C -0.09 -1.99 10.04 22.22 0.22 -1.76 16 18 C -0.15 -3.20 6.32 -19.72 -0.12 -3.33 16 19 C -0.15 -3.47 6.32 -19.72 -0.12 -3.59 16 20 C -0.08 -2.12 9.70 22.22 0.22 -1.91 16 21 C 0.09 1.82 7.63 71.36 0.54 2.36 16 22 O -0.38 -8.59 11.72 -148.98 -1.75 -10.33 16 23 C 0.09 1.64 7.63 71.36 0.54 2.18 16 24 C 0.06 2.62 5.78 86.45 0.50 3.12 16 25 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 26 H 0.38 20.33 7.32 -74.06 -0.54 19.79 16 27 H 0.04 1.99 7.98 -2.39 -0.02 1.97 16 28 H 0.04 2.30 7.24 -2.39 -0.02 2.29 16 29 H 0.05 1.61 7.14 -2.38 -0.02 1.59 16 30 H 0.07 2.60 7.76 -2.39 -0.02 2.58 16 31 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 32 H 0.05 1.37 7.82 -2.39 -0.02 1.35 16 33 H 0.13 2.91 7.41 -2.91 -0.02 2.89 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 3.15 7.68 -2.39 -0.02 3.13 16 41 H 0.04 1.59 7.76 -2.39 -0.02 1.57 16 Total: -1.00 -61.56 328.90 -2.23 -63.79 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.49 Total: 32.19 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 3.54 Total: -23.72 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -4.62 Total: -73.66 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -3.67 Total: -44.02 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.56 -2.23 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.921 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds