Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00635 * 2 1 3 5 5 C 1.50698 * 109.47369 * 174.49680 * 4 2 1 6 6 H 1.08001 * 119.99759 * 5.06376 * 5 4 2 7 7 C 1.37874 * 120.00228 * 184.78910 * 5 4 2 8 8 N 1.31511 * 119.99688 * 0.27208 * 7 5 4 9 9 Si 1.86799 * 120.00341 * 180.27629 * 7 5 4 10 10 H 1.48498 * 109.47319 * 89.99597 * 9 7 5 11 11 H 1.48491 * 109.47271 * 210.00127 * 9 7 5 12 12 H 1.48501 * 109.46716 * 330.00119 * 9 7 5 13 13 N 1.46896 * 109.47508 * 120.00470 * 2 1 3 14 14 C 1.46899 * 110.99846 * 280.38858 * 13 2 1 15 15 H 1.09007 * 109.47314 * 31.90167 * 14 13 2 16 16 C 1.53003 * 109.47267 * 151.90247 * 14 13 2 17 17 C 1.50697 * 109.47151 * 271.90531 * 14 13 2 18 18 C 1.31820 * 122.55271 * 332.56136 * 17 14 13 19 19 S 1.75293 * 111.40457 * 179.97438 * 18 17 14 20 20 C 1.75897 * 92.19312 * 0.02562 * 19 18 17 21 21 C 1.39855 * 130.56452 * 180.02562 * 20 19 18 22 22 C 1.37460 * 120.17854 * 180.02562 * 21 20 19 23 23 C 1.38848 * 120.19192 * 0.02562 * 22 21 20 24 24 C 1.36092 * 120.58520 * 359.97438 * 23 22 21 25 25 C 1.39739 * 109.67989 * 359.75047 * 20 19 18 26 26 H 1.08997 * 109.46993 * 295.43417 * 1 2 3 27 27 H 1.09006 * 109.46993 * 55.43288 * 1 2 3 28 28 H 1.08995 * 109.46853 * 175.43703 * 1 2 3 29 29 H 1.08998 * 109.47152 * 54.49071 * 4 2 1 30 30 H 1.09006 * 109.46762 * 294.49491 * 4 2 1 31 31 H 0.97005 * 120.00311 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99528 * 44.33445 * 13 2 1 33 33 H 1.08999 * 109.46924 * 64.81841 * 16 14 13 34 34 H 1.08997 * 109.47271 * 184.81786 * 16 14 13 35 35 H 1.09004 * 109.46818 * 304.81659 * 16 14 13 36 36 H 1.08003 * 124.30086 * 359.96273 * 18 17 14 37 37 H 1.08003 * 119.91368 * 0.02562 * 21 20 19 38 38 H 1.08003 * 119.90798 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.70493 * 179.97438 * 23 22 21 40 40 H 1.08008 * 119.76747 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 6 3.5409 -0.6042 -1.3194 6 1 4.0848 -0.1409 -0.5095 7 6 4.2201 -1.0939 -2.4148 8 7 3.5578 -1.6581 -3.4009 9 14 6.0811 -0.9559 -2.4981 10 1 6.6948 -2.1634 -1.8893 11 1 6.5063 -0.8462 -3.9166 12 1 6.5217 0.2516 -1.7545 13 7 2.0198 -0.6926 1.1993 14 6 1.9621 0.1862 2.3751 15 1 1.1195 0.8707 2.2762 16 6 1.7857 -0.6610 3.6369 17 6 3.2416 0.9760 2.4751 18 6 4.3872 0.5343 1.9952 19 16 5.6816 1.6841 2.2695 20 6 4.5996 2.8125 3.0758 21 6 4.8502 4.0674 3.6401 22 6 3.8296 4.7778 4.2260 23 6 2.5445 4.2535 4.2615 24 6 2.2788 3.0342 3.7184 25 6 3.3057 2.2854 3.1036 26 1 -0.3633 0.4413 0.9280 27 1 -0.3633 0.5831 -0.8463 28 1 -0.3633 -1.0244 -0.0818 29 1 1.5984 -0.2673 -2.1365 30 1 1.7594 -1.7734 -1.2015 31 1 4.0355 -2.0023 -4.1718 32 1 1.5051 -1.5454 1.3598 33 1 2.6680 -1.2843 3.7822 34 1 1.6572 -0.0065 4.4989 35 1 0.9062 -1.2957 3.5283 36 1 4.5124 -0.4154 1.4965 37 1 5.8482 4.4794 3.6154 38 1 4.0281 5.7463 4.6608 39 1 1.7486 4.8182 4.7242 40 1 1.2742 2.6391 3.7530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = 32.371742 kcal Electronic energy + Delta-G solvation = -20776.002698 eV Core-core repulsion = 17874.314831 eV Total energy + Delta-G solvation = -2901.687867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60321 -37.54848 -34.90986 -32.86248 -31.61057 -30.80922 -28.89441 -27.71990 -27.18946 -24.11341 -23.08788 -22.53911 -21.82066 -19.68550 -18.76842 -17.96980 -16.19413 -15.71578 -15.38213 -15.08869 -14.59904 -14.52945 -14.08832 -14.02159 -13.45358 -13.42720 -12.79554 -12.53742 -12.31277 -12.21611 -11.93719 -11.74542 -11.69982 -11.40221 -11.25797 -10.98033 -10.80449 -10.73199 -10.60571 -10.37081 -10.30627 -9.99120 -9.42858 -9.22453 -8.95220 -8.27003 -8.24394 -7.66731 -7.41991 -5.86811 -3.84104 0.98294 1.32044 1.84407 2.35784 2.60445 3.38961 3.45621 3.49673 3.81749 4.56544 4.58296 4.79238 4.94315 5.02666 5.23866 5.38689 5.42745 5.47112 5.50295 5.58002 5.71641 5.80668 5.87853 5.92231 5.97384 6.00063 6.11768 6.17920 6.27808 6.31900 6.47022 6.50945 6.63534 6.69076 6.84757 6.94195 7.05225 7.59038 7.70856 8.00916 8.08278 8.18863 8.62450 9.22161 9.77374 11.25417 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.006013 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.309851 B = 4655.826035 C = 5821.214676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.880 3.120 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.142 3.858 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.094 4.094 18 C -0.130 4.130 19 S 0.060 5.940 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.083 4.083 25 C -0.056 4.056 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.256 0.744 32 H 0.337 0.663 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.187 0.813 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 8.582 16.510 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.528 4.528 6 H 0.082 0.918 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.708 3.292 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.292 5.292 14 C 0.029 3.971 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.105 4.105 18 C -0.263 4.263 19 S 0.325 5.675 20 C -0.259 4.259 21 C -0.104 4.104 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.066 4.066 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.204 0.796 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.282 8.549 15.803 17.969 hybrid contribution -1.337 0.055 0.146 1.346 sum -1.619 8.605 15.949 18.194 Atomic orbital electron populations 1.22566 0.99719 1.01318 1.00389 1.21820 0.89694 0.98440 0.91952 0.91662 1.19103 0.96364 0.95021 0.89902 1.21242 0.91967 1.36510 1.03057 0.91793 1.24992 0.97685 0.96059 0.96073 1.69959 1.35072 1.40963 1.08472 0.86768 0.86875 0.78453 0.77064 1.20882 1.21542 1.19740 1.60487 1.60880 1.06379 1.01447 1.19990 0.92152 0.93650 0.91261 0.93409 1.21953 1.02067 0.99735 0.96759 1.19596 0.96345 0.93082 1.01501 1.25157 0.94075 1.04120 1.02990 1.84193 1.12274 1.11514 1.59523 1.22729 0.97418 0.99911 1.05840 1.20436 0.99461 0.92217 0.98309 1.20931 0.92832 0.99698 1.00281 1.20610 0.96931 0.95903 1.00941 1.20665 0.97955 0.94366 0.97277 1.19234 0.92851 0.94382 1.00112 0.94402 0.92615 0.93023 0.96168 0.96921 0.93393 0.84436 0.91688 0.92475 0.92506 0.79608 0.85989 0.85767 0.85972 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.18 37.16 0.34 -2.66 16 2 C 0.09 1.78 2.37 -67.71 -0.16 1.62 16 3 H 0.07 1.40 7.81 -51.93 -0.41 1.00 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.49 -13.43 8.85 -34.44 -0.30 -13.74 16 6 H 0.06 1.71 5.89 -52.49 -0.31 1.40 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.66 -11.57 4.90 -100.95 -0.49 -12.06 16 14 C 0.14 2.14 2.60 -68.87 -0.18 1.96 16 15 H 0.05 0.71 6.29 -51.93 -0.33 0.38 16 16 C -0.15 -1.81 9.18 37.16 0.34 -1.47 16 17 C -0.09 -1.55 4.92 -103.68 -0.51 -2.06 16 18 C -0.13 -2.32 9.42 28.84 0.27 -2.04 16 19 S 0.06 0.97 23.23 -107.50 -2.50 -1.53 16 20 C -0.14 -2.21 6.48 -38.42 -0.25 -2.46 16 21 C -0.08 -1.05 10.07 -39.26 -0.40 -1.44 16 22 C -0.12 -1.29 10.03 -39.64 -0.40 -1.68 16 23 C -0.12 -1.37 9.95 -40.13 -0.40 -1.77 16 24 C -0.08 -1.07 9.74 -39.24 -0.38 -1.45 16 25 C -0.06 -0.87 6.01 -105.38 -0.63 -1.51 16 26 H 0.04 0.55 7.02 -51.93 -0.36 0.18 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.34 5.47 8.07 -39.29 -0.32 5.16 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.19 3.64 6.77 -52.48 -0.36 3.28 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.36 7.73 -52.48 -0.41 0.95 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -30.23 340.14 -10.88 -41.10 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.84 Total: 3.53 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.88 Total: -26.63 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.24 Total: -38.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.23 -10.88 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.475 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds