Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47306 * 2 1 4 4 N 1.46893 * 109.47165 * 120.00478 * 2 1 3 5 5 C 1.46903 * 111.00059 * 209.26843 * 4 2 1 6 6 H 1.09006 * 109.46892 * 321.17200 * 5 4 2 7 7 C 1.52997 * 109.46900 * 81.16843 * 5 4 2 8 8 C 1.52995 * 109.47375 * 201.16924 * 5 4 2 9 9 C 1.50705 * 109.47071 * 64.99899 * 8 5 4 10 10 H 1.07999 * 119.99750 * 0.02562 * 9 8 5 11 11 C 1.37875 * 120.00064 * 180.27183 * 9 8 5 12 12 N 1.31523 * 119.99880 * 359.72854 * 11 9 8 13 13 Si 1.86803 * 120.00118 * 179.72843 * 11 9 8 14 14 H 1.48496 * 109.47064 * 89.99932 * 13 11 9 15 15 H 1.48497 * 109.47014 * 210.00384 * 13 11 9 16 16 H 1.48507 * 109.46798 * 329.99929 * 13 11 9 17 17 C 1.50708 * 109.46754 * 240.00468 * 2 1 3 18 18 C 1.31821 * 122.55130 * 264.71517 * 17 2 1 19 19 S 1.75301 * 111.40290 * 179.85969 * 18 17 2 20 20 C 1.75903 * 92.19036 * 0.33979 * 19 18 17 21 21 C 1.39856 * 130.56036 * 179.81892 * 20 19 18 22 22 C 1.37459 * 120.17697 * 179.97438 * 21 20 19 23 23 C 1.38850 * 120.19338 * 0.02680 * 22 21 20 24 24 C 1.36095 * 120.58859 * 359.97438 * 23 22 21 25 25 C 1.39745 * 109.68551 * 359.81430 * 20 19 18 26 26 H 1.09004 * 109.46700 * 295.11984 * 1 2 3 27 27 H 1.09003 * 109.47470 * 55.12072 * 1 2 3 28 28 H 1.09000 * 109.47239 * 175.12190 * 1 2 3 29 29 H 1.00896 * 111.00173 * 333.22046 * 4 2 1 30 30 H 1.08999 * 109.47265 * 184.84640 * 7 5 4 31 31 H 1.08997 * 109.47477 * 304.84502 * 7 5 4 32 32 H 1.08996 * 109.47346 * 64.84540 * 7 5 4 33 33 H 1.08994 * 109.47583 * 305.00278 * 8 5 4 34 34 H 1.08997 * 109.47008 * 184.99710 * 8 5 4 35 35 H 0.97000 * 119.99528 * 179.97438 * 12 11 9 36 36 H 1.08006 * 124.29950 * 359.95181 * 18 17 2 37 37 H 1.08007 * 119.91048 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.90647 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.71316 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.77702 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3231 -0.1607 1.6191 6 1 3.9293 0.0522 0.7385 7 6 3.1149 1.1272 2.4184 8 6 4.0379 -1.1933 2.4929 9 6 4.3525 -2.4161 1.6701 10 1 4.0711 -2.4528 0.6280 11 6 4.9950 -3.4900 2.2489 12 7 5.3380 -3.4451 3.5178 13 14 5.3781 -5.0086 1.2309 14 1 6.7176 -4.8613 0.6070 15 1 5.3694 -6.2072 2.1075 16 1 4.3518 -5.1646 0.1689 17 6 2.0323 -0.7104 -1.2306 18 6 2.3651 -1.9858 -1.2271 19 16 2.9052 -2.5104 -2.8102 20 6 2.6712 -0.9074 -3.4956 21 6 2.8863 -0.4331 -4.7936 22 6 2.6276 0.8816 -5.1006 23 6 2.1517 1.7461 -4.1238 24 6 1.9355 1.3053 -2.8545 25 6 2.1922 -0.0396 -2.5106 26 1 -0.3633 0.4363 0.9305 27 1 -0.3634 0.5877 -0.8431 28 1 -0.3634 -1.0239 -0.0874 29 1 1.3474 -0.6357 1.9495 30 1 4.0831 1.5678 2.6562 31 1 2.5306 1.8317 1.8266 32 1 2.5827 0.8996 3.3420 33 1 3.3935 -1.4724 3.3265 34 1 4.9640 -0.7656 2.8768 35 1 5.7897 -4.2007 3.9250 36 1 2.3106 -2.6267 -0.3594 37 1 3.2567 -1.1015 -5.5568 38 1 2.7957 1.2434 -6.1042 39 1 1.9507 2.7774 -4.3736 40 1 1.5647 1.9890 -2.1052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = 32.568465 kcal Electronic energy + Delta-G solvation = -20789.812709 eV Core-core repulsion = 17888.133373 eV Total energy + Delta-G solvation = -2901.679336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59487 -37.54435 -34.89921 -32.86507 -31.61325 -30.80105 -28.89561 -27.71967 -27.18626 -24.08599 -23.09337 -22.52666 -21.82737 -19.68517 -18.77214 -17.95292 -16.20195 -15.70160 -15.37654 -15.07568 -14.61215 -14.51189 -14.08302 -14.01736 -13.45022 -13.42322 -12.78021 -12.55156 -12.28544 -12.21214 -11.93050 -11.73472 -11.69346 -11.42031 -11.26681 -10.98529 -10.80962 -10.72886 -10.55435 -10.37451 -10.29686 -10.02411 -9.42031 -9.23135 -8.94961 -8.25804 -8.24290 -7.65870 -7.41268 -5.87049 -3.84244 0.99265 1.32515 1.85660 2.37662 2.61687 3.38941 3.45448 3.48306 3.82303 4.56271 4.58264 4.79919 4.94657 5.03429 5.24547 5.39452 5.43376 5.47226 5.50097 5.59155 5.72298 5.79840 5.87798 5.92683 5.97466 6.00707 6.11886 6.20025 6.28476 6.32307 6.47333 6.50588 6.63998 6.71130 6.86113 6.95172 7.05544 7.58324 7.70757 8.01813 8.07838 8.18954 8.61799 9.21433 9.76968 11.25199 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.006072 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.576854 B = 4610.143487 C = 5821.934088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 H 0.048 0.952 4 N -0.661 5.661 5 C 0.090 3.910 6 H 0.064 0.936 7 C -0.180 4.180 8 C 0.033 3.967 9 C -0.489 4.489 10 H 0.064 0.936 11 C 0.051 3.949 12 N -0.903 5.903 13 Si 0.881 3.119 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.274 1.274 17 C -0.096 4.096 18 C -0.129 4.129 19 S 0.058 5.942 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.083 4.083 25 C -0.056 4.056 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.337 0.663 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.256 0.744 36 H 0.190 0.810 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 9.509 -13.208 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 H 0.066 0.934 4 N -0.292 5.292 5 C -0.019 4.019 6 H 0.082 0.918 7 C -0.240 4.240 8 C -0.004 4.004 9 C -0.527 4.527 10 H 0.082 0.918 11 C -0.148 4.148 12 N -0.544 5.544 13 Si 0.710 3.290 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.199 1.199 17 C -0.107 4.107 18 C -0.262 4.262 19 S 0.323 5.677 20 C -0.259 4.259 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.065 4.065 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.207 0.793 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.253 7.402 -13.923 17.798 hybrid contribution -0.278 1.212 0.496 1.338 sum -8.532 8.613 -13.428 18.091 Atomic orbital electron populations 1.21963 0.94566 1.02696 1.01345 1.19981 0.93546 0.94472 0.88973 0.93394 1.60462 1.04819 1.57659 1.06216 1.21818 0.89691 0.92536 0.97863 0.91756 1.22562 1.01402 0.99456 1.00533 1.19098 0.94320 0.92690 0.94274 1.21238 1.35048 0.99522 0.96937 0.91821 1.24987 0.96542 0.98462 0.94791 1.69964 1.42037 1.31181 1.11240 0.86760 0.78744 0.83278 0.80261 1.20952 1.21532 1.19858 1.19610 1.04151 0.93570 0.93401 1.25242 1.01861 0.99622 0.99477 1.84212 1.71222 1.08208 1.04020 1.22739 1.06973 0.98309 0.97924 1.20437 1.00458 0.95921 0.93592 1.20928 1.00428 0.93069 0.99361 1.20609 1.00879 0.99684 0.93222 1.20661 0.99510 0.93534 0.96585 1.19238 1.00794 0.94147 0.92371 0.92514 0.92470 0.91690 0.84423 0.92638 0.94411 0.92973 0.96530 0.96563 0.93395 0.79308 0.86000 0.85782 0.85989 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.17 37.16 0.34 -1.49 16 2 C 0.14 2.16 2.58 -68.86 -0.18 1.98 16 3 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 4 N -0.66 -11.59 4.82 -100.95 -0.49 -12.08 16 5 C 0.09 1.78 2.36 -67.72 -0.16 1.62 16 6 H 0.06 1.37 7.83 -51.93 -0.41 0.96 16 7 C -0.18 -2.98 9.17 37.16 0.34 -2.63 16 8 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 9 C -0.49 -13.37 8.84 -34.44 -0.30 -13.67 16 10 H 0.06 1.70 5.64 -52.49 -0.30 1.40 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.10 -1.59 5.00 -103.67 -0.52 -2.11 16 18 C -0.13 -2.33 9.29 28.84 0.27 -2.06 16 19 S 0.06 0.96 23.23 -107.50 -2.50 -1.54 16 20 C -0.14 -2.23 6.48 -38.41 -0.25 -2.48 16 21 C -0.08 -1.05 10.07 -39.26 -0.40 -1.45 16 22 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 23 C -0.12 -1.37 9.95 -40.13 -0.40 -1.77 16 24 C -0.08 -1.08 9.76 -39.24 -0.38 -1.46 16 25 C -0.06 -0.87 6.01 -105.37 -0.63 -1.51 16 26 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.34 5.49 8.03 -39.29 -0.32 5.17 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.54 7.15 -51.93 -0.37 0.17 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.19 3.81 6.63 -52.48 -0.35 3.47 16 37 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.36 7.82 -52.49 -0.41 0.95 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -30.05 340.03 -10.88 -40.93 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.84 Total: 3.66 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.90 Total: -26.64 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.25 Total: -38.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.05 -10.88 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.501 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds