Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47306 * 2 1 4 4 N 1.46893 * 109.47165 * 120.00478 * 2 1 3 5 5 C 1.46903 * 111.00059 * 209.26843 * 4 2 1 6 6 H 1.09006 * 109.46892 * 321.17200 * 5 4 2 7 7 C 1.52997 * 109.46900 * 81.16843 * 5 4 2 8 8 C 1.52995 * 109.47375 * 201.16924 * 5 4 2 9 9 C 1.50705 * 109.47071 * 64.99899 * 8 5 4 10 10 H 1.07999 * 119.99750 * 0.02562 * 9 8 5 11 11 C 1.37875 * 120.00064 * 180.27183 * 9 8 5 12 12 N 1.31523 * 119.99880 * 359.72854 * 11 9 8 13 13 Si 1.86803 * 120.00118 * 179.72843 * 11 9 8 14 14 H 1.48496 * 109.47064 * 89.99932 * 13 11 9 15 15 H 1.48497 * 109.47014 * 210.00384 * 13 11 9 16 16 H 1.48507 * 109.46798 * 329.99929 * 13 11 9 17 17 C 1.50708 * 109.46754 * 240.00468 * 2 1 3 18 18 C 1.31821 * 122.55130 * 264.71517 * 17 2 1 19 19 S 1.75301 * 111.40290 * 179.85969 * 18 17 2 20 20 C 1.75903 * 92.19036 * 0.33979 * 19 18 17 21 21 C 1.39856 * 130.56036 * 179.81892 * 20 19 18 22 22 C 1.37459 * 120.17697 * 179.97438 * 21 20 19 23 23 C 1.38850 * 120.19338 * 0.02680 * 22 21 20 24 24 C 1.36095 * 120.58859 * 359.97438 * 23 22 21 25 25 C 1.39745 * 109.68551 * 359.81430 * 20 19 18 26 26 H 1.09004 * 109.46700 * 295.11984 * 1 2 3 27 27 H 1.09003 * 109.47470 * 55.12072 * 1 2 3 28 28 H 1.09000 * 109.47239 * 175.12190 * 1 2 3 29 29 H 1.00896 * 111.00173 * 333.22046 * 4 2 1 30 30 H 1.08999 * 109.47265 * 184.84640 * 7 5 4 31 31 H 1.08997 * 109.47477 * 304.84502 * 7 5 4 32 32 H 1.08996 * 109.47346 * 64.84540 * 7 5 4 33 33 H 1.08994 * 109.47583 * 305.00278 * 8 5 4 34 34 H 1.08997 * 109.47008 * 184.99710 * 8 5 4 35 35 H 0.97000 * 119.99528 * 179.97438 * 12 11 9 36 36 H 1.08006 * 124.29950 * 359.95181 * 18 17 2 37 37 H 1.08007 * 119.91048 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.90647 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.71316 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.77702 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3231 -0.1607 1.6191 6 1 3.9293 0.0522 0.7385 7 6 3.1149 1.1272 2.4184 8 6 4.0379 -1.1933 2.4929 9 6 4.3525 -2.4161 1.6701 10 1 4.0711 -2.4528 0.6280 11 6 4.9950 -3.4900 2.2489 12 7 5.3380 -3.4451 3.5178 13 14 5.3781 -5.0086 1.2309 14 1 6.7176 -4.8613 0.6070 15 1 5.3694 -6.2072 2.1075 16 1 4.3518 -5.1646 0.1689 17 6 2.0323 -0.7104 -1.2306 18 6 2.3651 -1.9858 -1.2271 19 16 2.9052 -2.5104 -2.8102 20 6 2.6712 -0.9074 -3.4956 21 6 2.8863 -0.4331 -4.7936 22 6 2.6276 0.8816 -5.1006 23 6 2.1517 1.7461 -4.1238 24 6 1.9355 1.3053 -2.8545 25 6 2.1922 -0.0396 -2.5106 26 1 -0.3633 0.4363 0.9305 27 1 -0.3634 0.5877 -0.8431 28 1 -0.3634 -1.0239 -0.0874 29 1 1.3474 -0.6357 1.9495 30 1 4.0831 1.5678 2.6562 31 1 2.5306 1.8317 1.8266 32 1 2.5827 0.8996 3.3420 33 1 3.3935 -1.4724 3.3265 34 1 4.9640 -0.7656 2.8768 35 1 5.7897 -4.2007 3.9250 36 1 2.3106 -2.6267 -0.3594 37 1 3.2567 -1.1015 -5.5568 38 1 2.7957 1.2434 -6.1042 39 1 1.9507 2.7774 -4.3736 40 1 1.5647 1.9890 -2.1052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = 16.553672 kcal Electronic energy + Delta-G solvation = -20790.507163 eV Core-core repulsion = 17888.133373 eV Total energy + Delta-G solvation = -2902.373790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67825 -38.84890 -36.27716 -34.73293 -33.09081 -31.80454 -30.03246 -29.36284 -28.71760 -25.22725 -25.03789 -23.56915 -22.91831 -21.36372 -19.96556 -19.06260 -18.32328 -16.81051 -16.71179 -16.45160 -16.09873 -15.74510 -15.55763 -15.17434 -14.65927 -14.54628 -14.27501 -13.97686 -13.81763 -13.45044 -13.39921 -13.21079 -12.95972 -12.73164 -12.68816 -12.48460 -12.38547 -12.22266 -11.96373 -11.77954 -11.77251 -11.49036 -11.09648 -11.02980 -10.48409 -10.44530 -9.37768 -9.05168 -8.59499 -8.09065 -6.11233 -0.09288 0.35100 0.67932 1.14970 1.36816 1.37808 1.44802 1.47795 2.45168 2.83595 3.21688 3.33002 3.79857 3.92753 4.11486 4.20103 4.28154 4.33997 4.37748 4.47419 4.51915 4.56468 4.60625 4.71432 4.85547 4.95958 5.00790 5.04225 5.14291 5.23549 5.26197 5.30939 5.38657 5.47721 5.55477 5.56891 5.65631 5.76513 5.93439 6.01858 6.36974 6.52234 6.78554 7.03864 7.53707 9.03500 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.006072 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.576854 B = 4610.143487 C = 5821.934088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.146 3.854 3 H 0.059 0.941 4 N -0.674 5.674 5 C 0.105 3.895 6 H 0.047 0.953 7 C -0.170 4.170 8 C 0.038 3.962 9 C -0.492 4.492 10 H 0.067 0.933 11 C -0.002 4.002 12 N -0.940 5.940 13 Si 0.938 3.062 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.267 1.267 17 C -0.086 4.086 18 C -0.165 4.165 19 S 0.029 5.971 20 C -0.156 4.156 21 C -0.097 4.097 22 C -0.103 4.103 23 C -0.116 4.116 24 C -0.089 4.089 25 C -0.083 4.083 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.344 0.656 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.055 0.945 33 H -0.006 1.006 34 H -0.012 1.012 35 H 0.256 0.744 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 12.080 -15.655 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 H 0.077 0.923 4 N -0.306 5.306 5 C -0.004 4.004 6 H 0.065 0.935 7 C -0.229 4.229 8 C 0.001 3.999 9 C -0.530 4.530 10 H 0.085 0.915 11 C -0.198 4.198 12 N -0.583 5.583 13 Si 0.765 3.235 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.098 4.098 18 C -0.298 4.298 19 S 0.294 5.706 20 C -0.271 4.271 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.109 4.109 25 C -0.091 4.091 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.164 0.836 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.006 0.994 35 H 0.065 0.935 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.472 9.979 -16.381 21.393 hybrid contribution 0.072 0.540 1.149 1.272 sum -9.400 10.520 -15.232 20.762 Atomic orbital electron populations 1.21899 0.92142 1.02554 1.03116 1.20074 0.95353 0.94217 0.87019 0.92306 1.60241 1.04179 1.58833 1.07383 1.21389 0.90190 0.92444 0.96403 0.93499 1.22421 1.01907 0.98029 1.00561 1.18982 0.93241 0.93508 0.94186 1.21638 1.33829 1.00229 0.97305 0.91529 1.25736 0.96868 1.01426 0.95756 1.70087 1.43360 1.32055 1.12782 0.85838 0.78643 0.80022 0.78991 1.20567 1.21173 1.19141 1.19925 1.02170 0.93109 0.94582 1.24939 1.05278 1.00286 0.99308 1.84058 1.72209 1.10385 1.03959 1.22925 1.07857 0.97068 0.99233 1.20783 1.00960 0.97368 0.92860 1.21433 0.97871 0.91931 1.01090 1.21099 0.98907 1.01423 0.92214 1.20967 0.99342 0.92447 0.98100 1.19390 1.02485 0.95569 0.91704 0.90622 0.90712 0.92852 0.83582 0.92887 0.91405 0.92588 0.98743 0.99415 0.93486 0.82296 0.84516 0.82089 0.82272 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.17 71.98 0.66 -2.48 16 2 C 0.15 4.21 2.58 44.17 0.11 4.32 16 3 H 0.06 1.59 6.54 -2.39 -0.02 1.58 16 4 N -0.67 -23.67 4.82 -473.31 -2.28 -25.95 16 5 C 0.11 4.19 2.36 44.91 0.11 4.30 16 6 H 0.05 2.02 7.83 -2.38 -0.02 2.00 16 7 C -0.17 -5.38 9.17 71.98 0.66 -4.72 16 8 C 0.04 1.99 4.65 29.85 0.14 2.12 16 9 C -0.49 -27.86 8.84 25.60 0.23 -27.64 16 10 H 0.07 3.70 5.64 -2.91 -0.02 3.68 16 11 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 12 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 13 Si 0.94 46.57 29.54 68.60 2.03 48.60 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 17 C -0.09 -2.84 5.00 -18.80 -0.09 -2.94 16 18 C -0.16 -6.22 9.29 67.04 0.62 -5.59 16 19 S 0.03 0.99 23.23 -56.49 -1.31 -0.32 16 20 C -0.16 -4.69 6.48 23.03 0.15 -4.54 16 21 C -0.10 -2.26 10.07 22.48 0.23 -2.04 16 22 C -0.10 -1.81 10.03 22.23 0.22 -1.59 16 23 C -0.12 -2.02 9.95 21.92 0.22 -1.80 16 24 C -0.09 -1.99 9.76 22.49 0.22 -1.77 16 25 C -0.08 -2.45 6.01 -20.35 -0.12 -2.58 16 26 H 0.07 1.43 8.03 -2.39 -0.02 1.41 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.34 11.05 8.03 -89.70 -0.72 10.33 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.75 7.15 -2.39 -0.02 1.73 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.16 6.88 6.63 -2.91 -0.02 6.86 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.14 2.53 7.82 -2.91 -0.02 2.51 16 Total: -1.00 -68.12 340.03 2.84 -65.28 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.31 Total: 17.18 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 3.81 Total: -46.60 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.00 Total: -84.13 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.31 Total: -0.32 kcal Total: -68.12 2.84 -65.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.835 kcal (2) G-P(sol) polarization free energy of solvation -68.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds