Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46867 * 2 1 4 4 C 1.53001 * 109.47076 * 240.00743 * 2 1 3 5 5 C 1.50701 * 109.46930 * 174.99806 * 4 2 1 6 6 H 1.07996 * 120.00211 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99800 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99739 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47182 * 120.00091 * 9 7 5 12 12 H 1.48507 * 109.47112 * 240.00101 * 9 7 5 13 13 N 1.46898 * 109.47448 * 120.00091 * 2 1 3 14 14 C 1.46893 * 111.00268 * 274.99933 * 13 2 1 15 15 H 1.09001 * 109.46739 * 35.00189 * 14 13 2 16 16 C 1.52997 * 109.47387 * 274.99951 * 14 13 2 17 17 C 1.50706 * 109.47176 * 154.99780 * 14 13 2 18 18 C 1.31820 * 122.55014 * 24.71778 * 17 14 13 19 19 S 1.75298 * 111.40240 * 179.85964 * 18 17 14 20 20 C 1.75899 * 92.19081 * 0.33987 * 19 18 17 21 21 C 1.39860 * 130.56215 * 179.81601 * 20 19 18 22 22 C 1.37458 * 120.18192 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.18342 * 0.02562 * 22 21 20 24 24 C 1.36096 * 120.59404 * 359.97438 * 23 22 21 25 25 C 1.39736 * 109.68492 * 359.81643 * 20 19 18 26 26 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47349 * 299.99058 * 1 2 3 28 28 H 1.08999 * 109.47716 * 59.99638 * 1 2 3 29 29 H 1.08998 * 109.47159 * 294.99488 * 4 2 1 30 30 H 1.08995 * 109.47225 * 54.99385 * 4 2 1 31 31 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99629 * 38.96337 * 13 2 1 33 33 H 1.08992 * 109.47280 * 299.99683 * 16 14 13 34 34 H 1.09002 * 109.46777 * 60.00403 * 16 14 13 35 35 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 36 36 H 1.08003 * 124.30019 * 359.95504 * 18 17 14 37 37 H 1.08002 * 119.90958 * 0.02562 * 21 20 19 38 38 H 1.07993 * 119.90571 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.69761 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.76919 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6147 -1.3128 6 1 4.0789 -0.0853 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 3.5764 -1.8382 -3.2992 9 14 6.0920 -1.0607 -2.4371 10 1 6.5835 -0.2895 -1.2672 11 1 6.6863 -2.4214 -2.4187 12 1 6.4860 -0.3653 -3.6887 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3468 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9808 2.3223 17 6 1.9787 -0.5678 3.6258 18 6 2.3218 -1.8381 3.7044 19 16 2.0875 -2.4650 5.3247 20 6 1.4853 -0.9188 5.9085 21 6 1.0425 -0.5363 7.1788 22 6 0.6108 0.7495 7.4019 23 6 0.6112 1.6755 6.3673 24 6 1.0379 1.3244 5.1236 25 6 1.4868 0.0111 4.8655 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.7517 -1.7714 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 4.0608 -2.2449 -4.0347 32 1 1.4497 -1.4980 1.4098 33 1 4.2360 0.2706 2.3785 34 1 3.4861 1.5525 1.3973 35 1 3.4575 1.6601 3.1735 36 1 2.7008 -2.4186 2.8762 37 1 1.0407 -1.2529 7.9869 38 1 0.2694 1.0399 8.3845 39 1 0.2699 2.6835 6.5513 40 1 1.0331 2.0554 4.3288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = 32.402043 kcal Electronic energy + Delta-G solvation = -20354.900260 eV Core-core repulsion = 17453.213707 eV Total energy + Delta-G solvation = -2901.686553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83466 -37.63113 -35.17477 -32.73612 -31.58256 -30.90972 -29.12398 -27.91582 -27.15570 -24.19477 -23.12763 -22.74653 -21.84352 -19.68565 -18.99778 -18.09556 -16.28735 -15.79257 -15.69196 -15.32296 -14.69010 -14.51544 -14.15366 -14.14882 -13.63749 -13.37269 -12.84397 -12.63307 -12.38492 -12.13314 -11.86405 -11.79012 -11.69163 -11.55969 -11.37177 -11.06649 -10.97176 -10.79264 -10.55303 -10.50040 -10.32286 -9.99240 -9.66354 -9.24503 -8.94471 -8.57532 -8.23688 -7.70236 -7.61216 -5.85817 -3.83017 0.70137 1.11706 1.54246 2.01667 2.27758 3.39285 3.46923 3.51785 3.60795 4.47220 4.58411 4.58646 4.77450 4.88274 5.10190 5.17642 5.33649 5.47043 5.51552 5.55189 5.72103 5.74642 5.80378 5.88863 5.91122 5.99271 6.03945 6.13600 6.23814 6.31753 6.35574 6.44465 6.56561 6.63733 6.70794 6.72820 7.05119 7.57424 7.70748 8.02547 8.06775 8.18096 8.62596 9.22921 9.78289 11.26426 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003988 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.605431 B = 7019.097588 C = 7348.319808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.034 3.966 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.658 5.658 14 C 0.143 3.857 15 H 0.045 0.955 16 C -0.131 4.131 17 C -0.087 4.087 18 C -0.171 4.171 19 S 0.068 5.932 20 C -0.140 4.140 21 C -0.085 4.085 22 C -0.110 4.110 23 C -0.122 4.122 24 C -0.077 4.077 25 C -0.061 4.061 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.256 0.744 32 H 0.332 0.668 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.181 0.819 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 4.415 20.476 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.289 5.289 14 C 0.031 3.969 15 H 0.063 0.937 16 C -0.189 4.189 17 C -0.099 4.099 18 C -0.305 4.305 19 S 0.333 5.667 20 C -0.255 4.255 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.097 4.097 25 C -0.070 4.070 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.198 0.802 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.836 2.914 20.750 21.751 hybrid contribution -0.125 1.321 -0.596 1.455 sum -5.961 4.235 20.154 21.439 Atomic orbital electron populations 1.22563 0.99562 1.01224 1.00583 1.21837 0.89794 0.98278 0.92087 0.91578 1.19103 0.96286 0.95347 0.89628 1.21204 0.91853 1.32616 1.06737 0.92138 1.25005 0.97873 0.96003 0.96105 1.69975 1.35033 1.37132 1.12433 0.86609 0.86646 0.77540 0.77601 1.19836 1.21370 1.21473 1.60732 1.57842 1.08275 1.02068 1.20138 0.97689 0.93049 0.86046 0.93676 1.21741 0.96660 0.99516 1.00962 1.19915 1.00975 0.94022 0.94949 1.25032 1.06621 0.98801 1.00029 1.84076 1.68198 1.10401 1.03993 1.22721 1.06817 0.98088 0.97923 1.20447 0.99517 0.96706 0.94080 1.21002 0.99924 0.92872 0.99245 1.20680 1.00821 0.99813 0.92933 1.20752 0.97420 0.94171 0.97358 1.19188 1.01423 0.94424 0.92002 0.93063 0.94462 0.92440 0.96558 0.96499 0.93453 0.84927 0.91755 0.91680 0.93586 0.80212 0.85799 0.85504 0.85645 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.15 37.15 0.34 -2.68 16 2 C 0.09 1.76 2.34 -67.72 -0.16 1.60 16 3 H 0.07 1.33 7.11 -51.92 -0.37 0.96 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.49 -13.46 8.84 -34.44 -0.30 -13.76 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.66 -11.87 5.22 -100.96 -0.53 -12.40 16 14 C 0.14 2.22 2.62 -68.87 -0.18 2.04 16 15 H 0.05 0.68 6.82 -51.93 -0.35 0.33 16 16 C -0.13 -2.06 9.38 37.16 0.35 -1.71 16 17 C -0.09 -1.26 5.01 -103.67 -0.52 -1.78 16 18 C -0.17 -2.43 9.79 28.84 0.28 -2.15 16 19 S 0.07 0.85 23.23 -107.50 -2.50 -1.65 16 20 C -0.14 -1.79 6.48 -38.42 -0.25 -2.04 16 21 C -0.08 -0.90 10.07 -39.26 -0.40 -1.29 16 22 C -0.11 -1.01 10.03 -39.64 -0.40 -1.41 16 23 C -0.12 -1.18 9.95 -40.12 -0.40 -1.58 16 24 C -0.08 -0.90 9.76 -39.24 -0.38 -1.28 16 25 C -0.06 -0.83 6.01 -105.38 -0.63 -1.46 16 26 H 0.05 0.85 8.13 -51.92 -0.42 0.43 16 27 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.33 5.73 7.15 -39.29 -0.28 5.45 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 7.43 -51.93 -0.39 0.71 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.18 2.63 7.37 -52.48 -0.39 2.24 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.31 7.82 -52.49 -0.41 0.90 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -30.37 342.33 -10.95 -41.32 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.92 Total: 2.61 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.88 Total: -25.47 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.21 Total: -39.04 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.37 -10.95 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.719 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds