Wall clock time and date at job start Tue Mar 31 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46867 * 2 1 4 4 C 1.53001 * 109.47076 * 240.00743 * 2 1 3 5 5 C 1.50701 * 109.46930 * 174.99806 * 4 2 1 6 6 H 1.07996 * 120.00211 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99800 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99739 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47182 * 120.00091 * 9 7 5 12 12 H 1.48507 * 109.47112 * 240.00101 * 9 7 5 13 13 N 1.46898 * 109.47448 * 120.00091 * 2 1 3 14 14 C 1.46893 * 111.00268 * 274.99933 * 13 2 1 15 15 H 1.09001 * 109.46739 * 35.00189 * 14 13 2 16 16 C 1.52997 * 109.47387 * 274.99951 * 14 13 2 17 17 C 1.50706 * 109.47176 * 154.99780 * 14 13 2 18 18 C 1.31820 * 122.55014 * 24.71778 * 17 14 13 19 19 S 1.75298 * 111.40240 * 179.85964 * 18 17 14 20 20 C 1.75899 * 92.19081 * 0.33987 * 19 18 17 21 21 C 1.39860 * 130.56215 * 179.81601 * 20 19 18 22 22 C 1.37458 * 120.18192 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.18342 * 0.02562 * 22 21 20 24 24 C 1.36096 * 120.59404 * 359.97438 * 23 22 21 25 25 C 1.39736 * 109.68492 * 359.81643 * 20 19 18 26 26 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47349 * 299.99058 * 1 2 3 28 28 H 1.08999 * 109.47716 * 59.99638 * 1 2 3 29 29 H 1.08998 * 109.47159 * 294.99488 * 4 2 1 30 30 H 1.08995 * 109.47225 * 54.99385 * 4 2 1 31 31 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99629 * 38.96337 * 13 2 1 33 33 H 1.08992 * 109.47280 * 299.99683 * 16 14 13 34 34 H 1.09002 * 109.46777 * 60.00403 * 16 14 13 35 35 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 36 36 H 1.08003 * 124.30019 * 359.95504 * 18 17 14 37 37 H 1.08002 * 119.90958 * 0.02562 * 21 20 19 38 38 H 1.07993 * 119.90571 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.69761 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.76919 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6147 -1.3128 6 1 4.0789 -0.0853 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 3.5764 -1.8382 -3.2992 9 14 6.0920 -1.0607 -2.4371 10 1 6.5835 -0.2895 -1.2672 11 1 6.6863 -2.4214 -2.4187 12 1 6.4860 -0.3653 -3.6887 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3468 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9808 2.3223 17 6 1.9787 -0.5678 3.6258 18 6 2.3218 -1.8381 3.7044 19 16 2.0875 -2.4650 5.3247 20 6 1.4853 -0.9188 5.9085 21 6 1.0425 -0.5363 7.1788 22 6 0.6108 0.7495 7.4019 23 6 0.6112 1.6755 6.3673 24 6 1.0379 1.3244 5.1236 25 6 1.4868 0.0111 4.8655 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.7517 -1.7714 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 4.0608 -2.2449 -4.0347 32 1 1.4497 -1.4980 1.4098 33 1 4.2360 0.2706 2.3785 34 1 3.4861 1.5525 1.3973 35 1 3.4575 1.6601 3.1735 36 1 2.7008 -2.4186 2.8762 37 1 1.0407 -1.2529 7.9869 38 1 0.2694 1.0399 8.3845 39 1 0.2699 2.6835 6.5513 40 1 1.0331 2.0554 4.3288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:33 Heat of formation + Delta-G solvation = 16.498447 kcal Electronic energy + Delta-G solvation = -20355.589892 eV Core-core repulsion = 17453.213707 eV Total energy + Delta-G solvation = -2902.376185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76534 -38.89387 -36.46698 -34.65317 -32.95603 -31.80917 -30.08827 -29.62449 -28.76470 -25.39419 -24.89134 -23.65276 -22.94596 -21.27656 -20.09306 -19.02653 -18.36768 -17.00561 -16.80785 -16.40716 -16.18266 -15.70336 -15.50220 -15.32582 -14.64616 -14.48543 -14.43072 -14.07623 -13.62350 -13.49285 -13.34720 -13.20415 -12.99900 -12.87739 -12.70400 -12.57981 -12.36570 -12.21840 -12.06184 -11.91579 -11.66074 -11.49934 -11.12812 -11.05918 -10.52160 -10.47189 -9.47072 -9.06680 -8.62777 -8.07781 -6.11512 -0.20365 0.30986 0.60076 1.02384 1.29761 1.40757 1.42241 1.54608 2.48394 2.78832 3.19715 3.31465 3.70834 3.79489 4.04760 4.15858 4.22537 4.31316 4.42053 4.43908 4.49170 4.52844 4.58589 4.66706 4.80945 4.87021 4.97307 5.01139 5.07905 5.18692 5.23462 5.27151 5.36532 5.41602 5.51151 5.55055 5.58213 5.72348 5.92784 5.97026 6.35084 6.49822 6.68384 7.03178 7.53942 9.04782 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003988 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.605431 B = 7019.097588 C = 7348.319808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.064 0.936 4 C 0.039 3.961 5 C -0.492 4.492 6 H 0.060 0.940 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.672 5.672 14 C 0.150 3.850 15 H 0.056 0.944 16 C -0.126 4.126 17 C -0.090 4.090 18 C -0.191 4.191 19 S 0.081 5.919 20 C -0.157 4.157 21 C -0.095 4.095 22 C -0.100 4.100 23 C -0.117 4.117 24 C -0.092 4.092 25 C -0.085 4.085 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.058 0.942 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.257 0.743 32 H 0.335 0.665 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 5.945 23.247 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.082 0.918 4 C 0.002 3.998 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.304 5.304 14 C 0.038 3.962 15 H 0.074 0.926 16 C -0.184 4.184 17 C -0.102 4.102 18 C -0.325 4.325 19 S 0.346 5.654 20 C -0.272 4.272 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.111 4.111 25 C -0.094 4.094 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.216 4.451 23.538 24.749 hybrid contribution -0.055 0.884 -1.359 1.622 sum -6.272 5.334 22.179 23.658 Atomic orbital electron populations 1.22422 0.97028 1.01600 1.01860 1.21487 0.91755 0.97132 0.90524 0.91807 1.18975 0.95205 0.94078 0.91564 1.21541 0.93283 1.31846 1.06360 0.92172 1.25837 1.02607 0.95878 0.95926 1.70105 1.36880 1.38317 1.13184 0.85568 0.81040 0.77547 0.77880 1.18946 1.21163 1.20871 1.60560 1.58177 1.09012 1.02638 1.20055 0.97756 0.92757 0.85614 0.92635 1.21691 0.96183 0.99291 1.01212 1.19869 1.01347 0.93975 0.94987 1.24997 1.07412 0.99122 1.00928 1.83898 1.68250 1.10703 1.02554 1.22969 1.07558 0.97754 0.98894 1.20811 0.99291 0.97976 0.93657 1.21465 0.97986 0.91959 1.00652 1.21093 0.99237 1.01306 0.92082 1.20972 0.97931 0.93542 0.98689 1.19269 1.02890 0.95633 0.91562 0.93175 0.91944 0.92306 0.99281 0.98995 0.93418 0.84603 0.93661 0.93063 0.91270 0.81552 0.83881 0.82059 0.82665 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 9.15 71.98 0.66 -4.93 16 2 C 0.10 4.00 2.34 44.91 0.11 4.11 16 3 H 0.06 2.56 7.11 -2.38 -0.02 2.55 16 4 C 0.04 2.04 4.65 29.85 0.14 2.18 16 5 C -0.49 -27.89 8.84 25.60 0.23 -27.66 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 9 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.67 -24.60 5.22 -473.32 -2.47 -27.08 16 14 C 0.15 4.58 2.62 44.17 0.12 4.70 16 15 H 0.06 1.59 6.82 -2.39 -0.02 1.57 16 16 C -0.13 -3.91 9.38 71.98 0.68 -3.24 16 17 C -0.09 -2.57 5.01 -18.80 -0.09 -2.66 16 18 C -0.19 -5.52 9.79 67.04 0.66 -4.86 16 19 S 0.08 1.98 23.23 -56.49 -1.31 0.67 16 20 C -0.16 -3.76 6.48 23.02 0.15 -3.61 16 21 C -0.09 -1.73 10.07 22.48 0.23 -1.50 16 22 C -0.10 -1.43 10.03 22.23 0.22 -1.20 16 23 C -0.12 -1.81 9.95 21.92 0.22 -1.59 16 24 C -0.09 -1.89 9.76 22.49 0.22 -1.67 16 25 C -0.09 -2.18 6.01 -20.36 -0.12 -2.30 16 26 H 0.05 1.64 8.13 -2.38 -0.02 1.62 16 27 H 0.06 1.74 7.43 -2.39 -0.02 1.72 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.33 11.84 7.15 -89.69 -0.64 11.20 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.71 7.43 -2.39 -0.02 1.69 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.17 5.14 7.37 -2.91 -0.02 5.11 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.13 2.44 7.82 -2.91 -0.02 2.42 16 Total: -1.00 -66.50 342.33 2.77 -63.73 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.39 Total: 17.02 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 3.86 Total: -44.18 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.19 Total: -85.25 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.31 Total: 0.67 kcal Total: -66.50 2.77 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.231 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds