Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.53000 * 109.46931 * 119.99759 * 2 1 3 5 5 C 1.50703 * 109.46939 * 295.00136 * 4 2 1 6 6 C 1.34664 * 126.59288 * 85.02577 * 5 4 2 7 7 N 1.34130 * 108.01982 * 179.97438 * 6 5 4 8 8 C 1.30500 * 109.25670 * 0.02562 * 7 6 5 9 9 N 1.35044 * 108.69977 * 359.76152 * 8 7 6 10 10 H 0.96995 * 126.40093 * 180.26998 * 9 8 7 11 11 C 1.50705 * 109.47258 * 239.99566 * 2 1 3 12 12 O 1.21299 * 119.99726 * 240.00582 * 11 2 1 13 13 N 1.34777 * 119.99695 * 59.99713 * 11 2 1 14 14 C 1.40597 * 119.99674 * 179.97438 * 13 11 2 15 15 C 1.40648 * 126.08199 * 359.97438 * 14 13 11 16 16 N 1.30907 * 108.38289 * 179.77574 * 15 14 13 17 17 N 1.40067 * 108.41135 * 0.38341 * 16 15 14 18 18 C 1.37320 * 126.07294 * 179.87911 * 17 16 15 19 19 H 1.08002 * 120.00430 * 179.69232 * 18 17 16 20 20 C 1.38992 * 119.99664 * 359.41108 * 18 17 16 21 21 N 1.31294 * 120.00157 * 0.27652 * 20 18 17 22 22 Si 1.86803 * 119.99838 * 180.27798 * 20 18 17 23 23 H 1.48506 * 109.47253 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99952 * 22 20 18 25 25 H 1.48498 * 109.47018 * 239.99998 * 22 20 18 26 26 C 1.35682 * 126.07675 * 180.02562 * 14 13 11 27 27 H 1.08995 * 109.47169 * 300.00401 * 1 2 3 28 28 H 1.09009 * 109.47391 * 60.00593 * 1 2 3 29 29 H 1.09004 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47261 * 54.99658 * 4 2 1 31 31 H 1.09000 * 109.47363 * 175.00055 * 4 2 1 32 32 H 1.08001 * 125.98979 * 359.96386 * 6 5 4 33 33 H 1.08005 * 125.64972 * 180.02562 * 8 7 6 34 34 H 0.96997 * 119.99849 * 0.02562 * 13 11 2 35 35 H 1.08000 * 125.80726 * 0.02562 * 15 14 13 36 36 H 0.96996 * 120.00263 * 179.97438 * 21 20 18 37 37 H 1.07994 * 126.25033 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.4665 -0.0211 3.1303 7 7 0.5105 0.8299 4.1661 8 6 1.6677 1.4331 4.1787 9 7 2.4054 0.9761 3.1439 10 1 3.3077 1.2490 2.9155 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6968 -1.1190 13 7 1.7067 -0.2501 -2.4546 14 6 2.1758 -0.9127 -3.6025 15 6 2.9887 -2.0603 -3.6224 16 7 3.2130 -2.3856 -4.8704 17 7 2.5624 -1.4576 -5.6934 18 6 2.5608 -1.4560 -7.0666 19 1 2.0193 -0.6924 -7.6051 20 6 3.2609 -2.4339 -7.7634 21 7 3.9192 -3.3623 -7.1087 22 14 3.2651 -2.4273 -9.6314 23 1 2.4533 -1.2856 -10.1242 24 1 4.6599 -2.2921 -10.1227 25 1 2.6850 -3.6993 -10.1322 26 6 1.9256 -0.5581 -4.8880 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6053 -1.7197 1.2953 31 1 3.1262 -0.7995 1.2057 32 1 -0.3654 -0.6575 2.8667 33 1 1.9847 2.1719 4.8999 34 1 1.1493 0.5387 -2.5435 35 1 3.3609 -2.5862 -2.7556 36 1 4.4075 -4.0449 -7.5949 37 1 1.3317 0.2827 -5.2145 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847409054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = 72.634492 kcal Electronic energy + Delta-G solvation = -21794.686587 eV Core-core repulsion = 18380.744181 eV Total energy + Delta-G solvation = -3413.942406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.95325 -41.71643 -40.39049 -36.12766 -35.82544 -34.92114 -33.35107 -32.23330 -30.88283 -29.41061 -27.51851 -26.87367 -24.58240 -22.83941 -22.38111 -21.81451 -21.31647 -20.89397 -19.29136 -18.66533 -17.87673 -17.38343 -16.88267 -16.43530 -16.05491 -15.63207 -15.50786 -15.16315 -14.95464 -14.84892 -14.54983 -14.30062 -13.77785 -13.51732 -13.44813 -13.29731 -12.99851 -12.92830 -12.79202 -12.21819 -12.08524 -12.02915 -11.82118 -11.01088 -10.92419 -10.89530 -10.81399 -10.52722 -10.09264 -9.26201 -8.50730 -8.46657 -6.23441 1.13532 1.22476 1.40159 1.54342 1.59026 1.88528 2.05330 2.21938 2.28621 2.43923 2.54878 2.93884 3.09515 3.68510 3.85682 3.94430 4.02119 4.27058 4.40454 4.44595 4.46850 4.62855 4.67973 4.79431 4.86985 4.95599 5.01616 5.09538 5.17066 5.30629 5.31305 5.40656 5.51591 5.82798 5.97164 6.33581 6.61106 6.75173 6.79125 7.18126 7.42740 7.48841 7.70136 8.53048 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.060922 B = 0.002681 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.491241 B =10441.618848 C =10636.984903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.116 0.884 4 C -0.020 4.020 5 C -0.015 4.015 6 C -0.039 4.039 7 N -0.537 5.537 8 C 0.189 3.811 9 N -0.559 5.559 10 H 0.433 0.567 11 C 0.501 3.499 12 O -0.578 6.578 13 N -0.616 5.616 14 C -0.043 4.043 15 C -0.061 4.061 16 N -0.311 5.311 17 N -0.170 5.170 18 C -0.353 4.353 19 H 0.141 0.859 20 C -0.008 4.008 21 N -0.826 5.826 22 Si 1.019 2.981 23 H -0.240 1.240 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.082 4.082 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.243 0.757 34 H 0.418 0.582 35 H 0.168 0.832 36 H 0.276 0.724 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 12.620 14.398 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.133 0.867 4 C -0.059 4.059 5 C -0.132 4.132 6 C -0.186 4.186 7 N -0.257 5.257 8 C -0.095 4.095 9 N -0.163 5.163 10 H 0.273 0.727 11 C 0.290 3.710 12 O -0.457 6.457 13 N -0.261 5.261 14 C -0.149 4.149 15 C -0.236 4.236 16 N -0.144 5.144 17 N 0.061 4.939 18 C -0.484 4.484 19 H 0.158 0.842 20 C -0.219 4.219 21 N -0.454 5.454 22 Si 0.838 3.162 23 H -0.163 1.163 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.232 4.232 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.259 0.741 34 H 0.256 0.744 35 H 0.185 0.815 36 H 0.085 0.915 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.647 11.046 14.258 18.625 hybrid contribution 0.692 0.420 -0.820 1.152 sum -3.955 11.465 13.438 18.102 Atomic orbital electron populations 1.21873 0.91199 1.03030 1.03990 1.21141 0.98901 1.00614 0.89694 0.86653 1.19708 1.01624 0.97396 0.87172 1.21080 0.94028 0.98814 0.99263 1.22285 0.98314 1.02931 0.95091 1.70278 1.21471 1.11549 1.22410 1.25677 0.87905 1.02252 0.93653 1.43326 1.17032 1.32295 1.23679 0.72654 1.21288 0.80158 0.84681 0.84922 1.90590 1.39953 1.28405 1.86801 1.42514 1.50706 1.30074 1.02764 1.17365 1.10543 1.00507 0.86503 1.24180 1.04422 0.99367 0.95647 1.78141 1.21481 1.14841 0.99896 1.44842 1.28095 1.15214 1.05741 1.20640 1.34680 1.16074 0.77017 0.84196 1.26882 0.94065 0.93962 1.07014 1.70404 1.24500 1.11733 1.38771 0.84538 0.78865 0.79561 0.73246 1.16298 1.19812 1.19840 1.22019 1.10007 1.02053 0.89167 0.89839 0.90871 0.92552 0.89679 0.90835 0.81153 0.74101 0.74442 0.81512 0.91456 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.77 71.98 0.63 -1.77 16 2 C -0.08 -1.63 2.71 -11.54 -0.03 -1.66 16 3 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.02 -0.40 4.60 29.85 0.14 -0.26 16 5 C -0.02 -0.27 6.09 40.95 0.25 -0.03 16 6 C -0.04 -0.80 10.10 83.52 0.84 0.05 16 7 N -0.54 -11.54 11.25 -200.31 -2.25 -13.79 16 8 C 0.19 2.64 13.04 180.26 2.35 4.99 16 9 N -0.56 -7.22 6.15 -186.49 -1.15 -8.37 16 10 H 0.43 3.09 8.96 -92.71 -0.83 2.26 16 11 C 0.50 15.77 7.13 87.66 0.62 16.40 16 12 O -0.58 -23.71 13.07 -3.09 -0.04 -23.75 16 13 N -0.62 -19.96 5.36 -303.92 -1.63 -21.59 16 14 C -0.04 -1.93 6.90 37.73 0.26 -1.67 16 15 C -0.06 -3.30 10.85 85.42 0.93 -2.37 16 16 N -0.31 -18.81 10.40 -56.47 -0.59 -19.40 16 17 N -0.17 -9.40 3.74 -190.01 -0.71 -10.11 16 18 C -0.35 -18.66 10.25 84.01 0.86 -17.80 16 19 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 20 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 21 N -0.83 -47.88 11.81 21.66 0.26 -47.62 16 22 Si 1.02 38.56 29.55 68.60 2.03 40.59 16 23 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 24 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.08 -3.75 11.49 83.37 0.96 -2.80 16 27 H 0.08 1.26 6.18 -2.39 -0.01 1.24 16 28 H 0.07 1.06 7.57 -2.38 -0.02 1.04 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 32 H 0.17 3.15 8.02 -2.91 -0.02 3.13 16 33 H 0.24 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.42 9.75 8.24 -92.71 -0.76 8.98 16 35 H 0.17 9.11 5.92 -2.91 -0.02 9.09 16 36 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.19 6.64 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -80.89 319.61 3.73 -77.16 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.46 Total: 33.76 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 8.28 Total: -6.87 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -6.07 Total: -120.88 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -80.89 3.73 -77.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847409054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.796 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds