Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47342 * 71.64070 * 3 2 1 5 5 C 1.36054 * 117.00111 * 180.02562 * 4 3 2 6 6 C 1.38478 * 120.05712 * 0.26301 * 5 4 3 7 7 C 1.38293 * 120.04214 * 180.28067 * 6 5 4 8 8 C 1.38448 * 120.15440 * 359.72706 * 7 6 5 9 9 F 1.35102 * 119.94557 * 180.02562 * 8 7 6 10 10 C 1.38404 * 120.11095 * 359.97438 * 8 7 6 11 11 C 1.38726 * 119.95651 * 0.02562 * 10 8 7 12 12 N 1.39957 * 120.07706 * 180.02562 * 11 10 8 13 13 C 1.46497 * 120.00062 * 354.65422 * 12 11 10 14 14 C 1.52997 * 109.47397 * 184.84566 * 13 12 11 15 15 C 1.50702 * 115.55063 * 80.98917 * 14 13 12 16 16 H 1.07997 * 120.00229 * 219.77012 * 15 14 13 17 17 C 1.37882 * 119.99615 * 39.77675 * 15 14 13 18 18 N 1.31507 * 120.00367 * 16.75654 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 196.75240 * 17 15 14 20 20 H 1.48506 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46901 * 119.99789 * 19 17 15 22 22 H 1.48494 * 109.47434 * 240.00011 * 19 17 15 23 23 C 1.52998 * 117.49694 * 295.32753 * 14 13 12 24 24 C 1.53001 * 60.03146 * 252.49401 * 23 14 13 25 25 H 4.38452 * 5.44511 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47388 * 311.63570 * 3 2 1 27 27 H 1.09005 * 109.46934 * 191.63190 * 3 2 1 28 28 H 1.08001 * 119.97620 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.92060 * 179.70521 * 7 6 5 30 30 H 1.08000 * 120.02159 * 180.02562 * 10 8 7 31 31 H 0.96995 * 119.99682 * 174.65780 * 12 11 10 32 32 H 1.08997 * 109.46876 * 64.84056 * 13 12 11 33 33 H 1.09010 * 109.46764 * 304.84278 * 13 12 11 34 34 H 0.96996 * 120.00284 * 184.98901 * 18 17 15 35 35 H 1.09005 * 117.49974 * 359.97438 * 23 14 13 36 36 H 1.09000 * 117.50078 * 144.99684 * 23 14 13 37 37 H 1.09005 * 117.49681 * 107.49685 * 24 23 14 38 38 H 1.08995 * 117.50117 * 252.52411 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.4235 -1.2787 5 6 4.4714 -0.4795 -1.4477 6 6 5.3159 -0.1392 -0.4043 7 6 6.6869 -0.1907 -0.5782 8 6 7.2194 -0.5877 -1.7930 9 9 8.5594 -0.6370 -1.9581 10 6 6.3813 -0.9351 -2.8382 11 6 5.0053 -0.8851 -2.6688 12 7 4.1555 -1.2364 -3.7238 13 6 4.7139 -1.5443 -5.0428 14 6 3.5747 -1.7763 -6.0374 15 6 2.9487 -0.5312 -6.6107 16 1 1.8794 -0.4810 -6.7537 17 6 3.7412 0.5440 -6.9529 18 7 5.0388 0.3853 -7.0962 19 14 2.9716 2.2261 -7.2132 20 1 1.5056 2.1392 -6.9929 21 1 3.5596 3.1934 -6.2520 22 1 3.2380 2.6830 -8.6008 23 6 2.6611 -2.9798 -5.7969 24 6 3.6694 -3.0036 -6.9474 25 1 -1.0500 0.0001 -0.0002 26 1 3.0097 -0.6819 0.7680 27 1 3.0089 1.0074 0.2072 28 1 4.9035 0.1713 0.5443 29 1 7.3437 0.0797 0.2354 30 1 6.7982 -1.2450 -3.7851 31 1 3.1968 -1.2760 -3.5817 32 1 5.3274 -2.4428 -4.9768 33 1 5.3274 -0.7093 -5.3814 34 1 5.6057 1.1539 -7.2654 35 1 2.8719 -3.6065 -4.9303 36 1 1.6073 -2.8710 -6.0534 37 1 4.5434 -3.6456 -6.8374 38 1 3.2791 -2.9099 -7.9607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849314651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 29.965803 kcal Electronic energy + Delta-G solvation = -22402.167602 eV Core-core repulsion = 18934.162230 eV Total energy + Delta-G solvation = -3468.005372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.47847 -39.97751 -37.61906 -36.72102 -34.06129 -33.40663 -32.26411 -29.60286 -29.08384 -27.22371 -25.87865 -25.03413 -22.05905 -21.74175 -21.10005 -19.21545 -18.59988 -18.09357 -17.24977 -16.65708 -15.98396 -15.93855 -15.13992 -14.87767 -14.75068 -14.60893 -14.29971 -14.06094 -13.70906 -13.27257 -12.96191 -12.82418 -12.23135 -12.05090 -11.97796 -11.64064 -11.16389 -11.05131 -10.95657 -10.81758 -10.55562 -10.52654 -10.32179 -10.17551 -9.64904 -9.46340 -9.11826 -8.81396 -8.19396 -8.11056 -6.67432 -6.17306 -4.17879 1.54474 1.78410 2.26981 2.66311 3.23419 3.33578 3.37041 3.67470 3.97251 4.07917 4.30795 4.33421 4.72087 4.91341 4.98255 5.01572 5.19187 5.30871 5.45872 5.59251 5.73642 5.81531 5.93957 6.01653 6.25423 6.30208 6.43816 6.45158 6.55044 6.59615 6.61772 6.81518 6.95717 7.08180 7.25452 7.40395 7.47507 7.51090 7.83547 8.05006 8.28855 8.48309 8.79067 9.42289 10.85847 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.006163 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.009836 B = 4541.892258 C = 5653.304270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.194 4.194 3 C 0.176 3.824 4 O -0.308 6.308 5 C 0.029 3.971 6 C -0.135 4.135 7 C -0.200 4.200 8 C 0.119 3.881 9 F -0.146 7.146 10 C -0.215 4.215 11 C 0.249 3.751 12 N -0.708 5.708 13 C 0.144 3.856 14 C 0.040 3.960 15 C -0.488 4.488 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.871 5.871 19 Si 0.885 3.115 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.284 1.284 23 C -0.208 4.208 24 C -0.191 4.191 25 H 0.223 0.777 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.405 0.595 32 H 0.027 0.973 33 H 0.114 0.886 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -1.182 14.020 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.194 4.194 3 C 0.101 3.899 4 O -0.223 6.223 5 C -0.019 4.019 6 C -0.155 4.155 7 C -0.222 4.222 8 C 0.099 3.901 9 F -0.124 7.124 10 C -0.240 4.240 11 C 0.138 3.862 12 N -0.331 5.331 13 C 0.021 3.979 14 C 0.039 3.961 15 C -0.525 4.525 16 H 0.080 0.920 17 C -0.129 4.129 18 N -0.508 5.508 19 Si 0.712 3.288 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.210 1.210 23 C -0.246 4.246 24 C -0.229 4.229 25 H 0.240 0.760 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.240 0.760 32 H 0.045 0.955 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.150 -1.190 13.508 13.609 hybrid contribution -0.571 0.916 0.031 1.080 sum -1.722 -0.274 13.539 13.651 Atomic orbital electron populations 1.24970 0.95849 1.00290 0.97226 1.22357 0.93662 1.00991 1.02434 1.19166 0.84716 1.00487 0.85486 1.86072 1.19091 1.83986 1.33150 1.18332 0.81960 1.07163 0.94449 1.20640 0.93043 1.03936 0.97869 1.20407 0.94989 1.09852 0.96930 1.17258 0.76581 1.01696 0.94571 1.91448 1.30500 1.94317 1.96183 1.20383 0.90897 1.12132 1.00543 1.16984 0.89725 0.93371 0.86088 1.45026 1.08311 1.71538 1.08197 1.21354 0.96442 1.00820 0.79295 1.19094 0.93800 0.88126 0.95043 1.20534 0.93254 0.97483 1.41236 0.92005 1.24890 0.94917 0.99065 0.94028 1.69922 1.04214 1.30309 1.46308 0.86649 0.79892 0.84488 0.77753 1.19625 1.20676 1.21012 1.22863 0.96257 1.05617 0.99833 1.22951 0.99621 1.05136 0.95205 0.76034 0.89955 0.89890 0.85216 0.85556 0.84007 0.75954 0.95470 0.86817 0.92679 0.91270 0.90517 0.91546 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.19 -2.46 13.73 -37.12 -0.51 -2.97 16 3 C 0.18 2.10 5.21 34.37 0.18 2.28 16 4 O -0.31 -4.95 9.35 -19.91 -0.19 -5.13 16 5 C 0.03 0.48 6.70 -39.10 -0.26 0.22 16 6 C -0.14 -1.84 9.03 -39.47 -0.36 -2.20 16 7 C -0.20 -2.84 10.02 -39.48 -0.40 -3.24 16 8 C 0.12 1.97 7.29 -39.44 -0.29 1.68 16 9 F -0.15 -2.42 17.26 2.25 0.04 -2.38 16 10 C -0.21 -3.90 9.28 -39.34 -0.37 -4.27 16 11 C 0.25 4.65 6.66 -83.57 -0.56 4.10 16 12 N -0.71 -14.42 5.68 -58.50 -0.33 -14.75 16 13 C 0.14 3.21 4.62 -4.05 -0.02 3.19 16 14 C 0.04 0.95 1.71 -155.62 -0.27 0.68 16 15 C -0.49 -12.82 8.98 -34.44 -0.31 -13.13 16 16 H 0.06 1.64 7.87 -52.49 -0.41 1.23 16 17 C 0.07 1.96 5.12 -17.82 -0.09 1.87 16 18 N -0.87 -23.51 11.10 55.43 0.62 -22.89 16 19 Si 0.89 20.77 29.57 -169.99 -5.03 15.74 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.21 -4.34 9.80 -26.73 -0.26 -4.61 16 24 C -0.19 -4.20 9.89 -26.69 -0.26 -4.46 16 25 H 0.22 1.55 7.80 -54.09 -0.42 1.12 16 26 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 27 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 28 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 29 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.14 2.66 6.77 -52.49 -0.36 2.31 16 31 H 0.41 8.33 7.76 -40.82 -0.32 8.01 16 32 H 0.03 0.58 7.78 -51.93 -0.40 0.18 16 33 H 0.11 2.85 5.26 -51.92 -0.27 2.58 16 34 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 38 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -28.09 335.32 -7.59 -35.68 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.56 Total: 10.78 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.20 Total: -22.11 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.28 Total: -37.64 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.09 -7.59 -35.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.650 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds