Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47342 * 71.64070 * 3 2 1 5 5 C 1.36054 * 117.00111 * 180.02562 * 4 3 2 6 6 C 1.38478 * 120.05712 * 0.26301 * 5 4 3 7 7 C 1.38293 * 120.04214 * 180.28067 * 6 5 4 8 8 C 1.38448 * 120.15440 * 359.72706 * 7 6 5 9 9 F 1.35102 * 119.94557 * 180.02562 * 8 7 6 10 10 C 1.38404 * 120.11095 * 359.97438 * 8 7 6 11 11 C 1.38726 * 119.95651 * 0.02562 * 10 8 7 12 12 N 1.39957 * 120.07706 * 180.02562 * 11 10 8 13 13 C 1.46497 * 120.00062 * 354.65422 * 12 11 10 14 14 C 1.52997 * 109.47397 * 184.84566 * 13 12 11 15 15 C 1.50702 * 115.55063 * 80.98917 * 14 13 12 16 16 H 1.07997 * 120.00229 * 219.77012 * 15 14 13 17 17 C 1.37882 * 119.99615 * 39.77675 * 15 14 13 18 18 N 1.31507 * 120.00367 * 16.75654 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 196.75240 * 17 15 14 20 20 H 1.48506 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46901 * 119.99789 * 19 17 15 22 22 H 1.48494 * 109.47434 * 240.00011 * 19 17 15 23 23 C 1.52998 * 117.49694 * 295.32753 * 14 13 12 24 24 C 1.53001 * 60.03146 * 252.49401 * 23 14 13 25 25 H 4.38452 * 5.44511 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47388 * 311.63570 * 3 2 1 27 27 H 1.09005 * 109.46934 * 191.63190 * 3 2 1 28 28 H 1.08001 * 119.97620 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.92060 * 179.70521 * 7 6 5 30 30 H 1.08000 * 120.02159 * 180.02562 * 10 8 7 31 31 H 0.96995 * 119.99682 * 174.65780 * 12 11 10 32 32 H 1.08997 * 109.46876 * 64.84056 * 13 12 11 33 33 H 1.09010 * 109.46764 * 304.84278 * 13 12 11 34 34 H 0.96996 * 120.00284 * 184.98901 * 18 17 15 35 35 H 1.09005 * 117.49974 * 359.97438 * 23 14 13 36 36 H 1.09000 * 117.50078 * 144.99684 * 23 14 13 37 37 H 1.09005 * 117.49681 * 107.49685 * 24 23 14 38 38 H 1.08995 * 117.50117 * 252.52411 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.4235 -1.2787 5 6 4.4714 -0.4795 -1.4477 6 6 5.3159 -0.1392 -0.4043 7 6 6.6869 -0.1907 -0.5782 8 6 7.2194 -0.5877 -1.7930 9 9 8.5594 -0.6370 -1.9581 10 6 6.3813 -0.9351 -2.8382 11 6 5.0053 -0.8851 -2.6688 12 7 4.1555 -1.2364 -3.7238 13 6 4.7139 -1.5443 -5.0428 14 6 3.5747 -1.7763 -6.0374 15 6 2.9487 -0.5312 -6.6107 16 1 1.8794 -0.4810 -6.7537 17 6 3.7412 0.5440 -6.9529 18 7 5.0388 0.3853 -7.0962 19 14 2.9716 2.2261 -7.2132 20 1 1.5056 2.1392 -6.9929 21 1 3.5596 3.1934 -6.2520 22 1 3.2380 2.6830 -8.6008 23 6 2.6611 -2.9798 -5.7969 24 6 3.6694 -3.0036 -6.9474 25 1 -1.0500 0.0001 -0.0002 26 1 3.0097 -0.6819 0.7680 27 1 3.0089 1.0074 0.2072 28 1 4.9035 0.1713 0.5443 29 1 7.3437 0.0797 0.2354 30 1 6.7982 -1.2450 -3.7851 31 1 3.1968 -1.2760 -3.5817 32 1 5.3274 -2.4428 -4.9768 33 1 5.3274 -0.7093 -5.3814 34 1 5.6057 1.1539 -7.2654 35 1 2.8719 -3.6065 -4.9303 36 1 1.6073 -2.8710 -6.0534 37 1 4.5434 -3.6456 -6.8374 38 1 3.2791 -2.9099 -7.9607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849314651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 15.640500 kcal Electronic energy + Delta-G solvation = -22402.788794 eV Core-core repulsion = 18934.162230 eV Total energy + Delta-G solvation = -3468.626564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.76585 -41.18947 -39.11140 -38.15192 -35.49774 -34.29867 -34.25331 -30.88433 -30.35058 -28.24272 -27.75539 -26.68323 -23.32100 -23.21453 -22.67823 -21.01628 -19.58919 -19.29577 -18.52819 -18.21568 -17.40396 -17.01535 -16.71570 -16.39367 -16.23973 -15.89372 -15.64843 -15.39350 -15.32634 -14.79391 -14.30930 -13.99008 -13.66008 -13.56130 -13.44600 -13.12609 -12.88351 -12.81376 -12.36889 -12.22017 -12.19833 -12.07205 -11.53352 -11.31218 -11.25403 -11.06148 -10.78859 -10.63408 -10.05273 -9.42574 -8.25323 -7.99503 -6.21893 0.28677 0.52998 1.33080 1.35022 1.40582 1.49320 1.80724 2.38738 2.53607 2.70855 2.77797 2.98289 3.41379 3.48879 3.64760 3.89670 4.04860 4.19881 4.24254 4.38806 4.41955 4.47642 4.50694 4.68302 4.78231 4.82624 4.90685 4.98725 5.04722 5.09864 5.21742 5.27164 5.30920 5.51754 5.55947 5.84060 5.89790 6.23917 6.33785 6.56973 6.62751 6.74621 7.00759 7.39140 8.84963 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.006163 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.009836 B = 4541.892258 C = 5653.304270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.242 4.242 3 C 0.167 3.833 4 O -0.332 6.332 5 C 0.032 3.968 6 C -0.123 4.123 7 C -0.179 4.179 8 C 0.101 3.899 9 F -0.149 7.149 10 C -0.229 4.229 11 C 0.217 3.783 12 N -0.717 5.717 13 C 0.162 3.838 14 C 0.011 3.989 15 C -0.503 4.503 16 H 0.051 0.949 17 C 0.035 3.965 18 N -0.893 5.893 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.183 4.183 24 C -0.192 4.192 25 H 0.254 0.746 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.122 0.878 31 H 0.401 0.599 32 H 0.026 0.974 33 H 0.083 0.917 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -0.699 16.631 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.242 4.242 3 C 0.094 3.906 4 O -0.247 6.247 5 C -0.017 4.017 6 C -0.142 4.142 7 C -0.200 4.200 8 C 0.081 3.919 9 F -0.128 7.128 10 C -0.254 4.254 11 C 0.110 3.890 12 N -0.343 5.343 13 C 0.038 3.962 14 C 0.011 3.989 15 C -0.540 4.540 16 H 0.070 0.930 17 C -0.166 4.166 18 N -0.530 5.530 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.220 4.220 24 C -0.231 4.231 25 H 0.271 0.729 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.192 0.808 29 H 0.179 0.821 30 H 0.140 0.860 31 H 0.236 0.764 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.907 -0.704 16.150 16.278 hybrid contribution -0.375 0.768 -0.668 1.085 sum -2.283 0.064 15.482 15.649 Atomic orbital electron populations 1.25886 0.96840 0.98775 0.95368 1.22879 0.94649 1.02533 1.04129 1.19530 0.84692 1.02097 0.84305 1.86044 1.18760 1.84163 1.35739 1.18457 0.82792 1.06306 0.94122 1.21106 0.92411 1.01991 0.98687 1.20847 0.95770 1.06915 0.96449 1.17441 0.76350 1.02848 0.95267 1.91435 1.30635 1.94451 1.96290 1.20353 0.91380 1.13058 1.00561 1.17232 0.89721 0.95201 0.86888 1.44758 1.08105 1.73538 1.07893 1.20900 0.95601 0.99408 0.80273 1.19174 0.95365 0.88111 0.96284 1.20741 0.92842 0.99027 1.41366 0.93033 1.25469 0.95301 1.01660 0.94171 1.70025 1.05009 1.30787 1.47187 0.85833 0.79161 0.81145 0.77524 1.19347 1.20892 1.20682 1.22828 0.95905 1.03653 0.99622 1.22940 1.00594 1.04482 0.95043 0.72935 0.87361 0.88050 0.80797 0.82054 0.86032 0.76397 0.95559 0.89898 0.92837 0.89531 0.90181 0.90366 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 19.25 74.32 1.43 -1.54 16 2 C -0.24 -5.66 13.73 31.13 0.43 -5.23 16 3 C 0.17 3.56 5.21 70.18 0.37 3.93 16 4 O -0.33 -10.19 9.35 -94.16 -0.88 -11.07 16 5 C 0.03 0.99 6.70 22.58 0.15 1.14 16 6 C -0.12 -2.91 9.03 22.34 0.20 -2.71 16 7 C -0.18 -4.48 10.02 22.33 0.22 -4.26 16 8 C 0.10 3.24 7.29 22.36 0.16 3.41 16 9 F -0.15 -4.86 17.26 44.97 0.78 -4.09 16 10 C -0.23 -8.54 9.28 22.43 0.21 -8.33 16 11 C 0.22 8.21 6.66 38.22 0.25 8.46 16 12 N -0.72 -30.04 5.68 -338.99 -1.93 -31.96 16 13 C 0.16 7.52 4.62 86.38 0.40 7.92 16 14 C 0.01 0.55 1.71 -52.90 -0.09 0.46 16 15 C -0.50 -26.95 8.98 25.60 0.23 -26.72 16 16 H 0.05 2.79 7.87 -2.91 -0.02 2.77 16 17 C 0.03 1.88 5.12 84.66 0.43 2.31 16 18 N -0.89 -49.62 11.10 21.45 0.24 -49.39 16 19 Si 0.94 43.28 29.57 68.60 2.03 45.31 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C -0.18 -7.55 9.80 30.59 0.30 -7.25 16 24 C -0.19 -8.51 9.89 30.62 0.30 -8.21 16 25 H 0.25 2.73 7.80 -4.42 -0.03 2.70 16 26 H 0.11 1.68 7.65 -2.39 -0.02 1.66 16 27 H 0.10 1.73 7.68 -2.38 -0.02 1.71 16 28 H 0.17 2.56 6.29 -2.91 -0.02 2.54 16 29 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.12 4.90 6.77 -2.91 -0.02 4.88 16 31 H 0.40 16.89 7.76 -92.71 -0.72 16.18 16 32 H 0.03 1.18 7.78 -2.39 -0.02 1.16 16 33 H 0.08 4.38 5.26 -2.38 -0.01 4.37 16 34 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 35 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.08 3.23 8.08 -2.38 -0.02 3.21 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -62.23 335.32 5.60 -56.62 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.37 Total: 31.19 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 5.00 Total: -36.62 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.69 Total: -81.35 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.88 Total: -11.07 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -62.23 5.60 -56.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.263 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds