Wall clock time and date at job start Tue Mar 31 2020 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.50703 * 115.55794 * 38.75285 * 3 2 1 5 5 O 1.20832 * 119.99844 * 31.33839 * 4 3 2 6 6 O 1.34227 * 120.00005 * 211.34016 * 4 3 2 7 7 C 1.45202 * 116.99574 * 185.10273 * 6 4 3 8 8 C 1.53004 * 109.46672 * 184.87156 * 7 6 4 9 9 C 1.50697 * 115.55197 * 294.87666 * 8 7 6 10 10 H 1.08001 * 120.00130 * 95.13805 * 9 8 7 11 11 C 1.37882 * 119.99983 * 275.14713 * 9 8 7 12 12 N 1.31511 * 120.00015 * 5.25937 * 11 9 8 13 13 Si 1.86800 * 119.99858 * 185.25904 * 11 9 8 14 14 H 1.48497 * 109.47070 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47194 * 299.99812 * 13 11 9 16 16 H 1.48496 * 109.46921 * 60.00225 * 13 11 9 17 17 C 1.53005 * 117.49790 * 80.54749 * 8 7 6 18 18 C 1.53000 * 117.49616 * 149.20765 * 8 7 6 19 19 C 1.53088 * 117.54107 * 252.98112 * 3 2 1 20 20 C 1.52550 * 117.50976 * 184.47018 * 3 2 1 21 21 C 1.53879 * 120.82336 * 357.29182 * 20 3 2 22 22 C 1.54992 * 104.06265 * 192.35863 * 21 20 3 23 23 C 1.54924 * 102.81987 * 37.56876 * 22 21 20 24 24 C 1.53485 * 121.09188 * 217.92382 * 20 3 2 25 25 H 1.09000 * 109.47271 * 64.87180 * 7 6 4 26 26 H 1.09003 * 109.47440 * 304.86908 * 7 6 4 27 27 H 0.96997 * 120.00335 * 174.99637 * 12 11 9 28 28 H 1.08994 * 117.49438 * 214.99924 * 17 8 7 29 29 H 1.08990 * 117.49850 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.50266 * 359.97438 * 18 8 7 31 31 H 1.09008 * 117.49757 * 144.97542 * 18 8 7 32 32 H 1.09001 * 117.50788 * 0.02562 * 19 3 2 33 33 H 1.08996 * 117.50885 * 145.09828 * 19 3 2 34 34 H 1.08998 * 110.50960 * 311.00523 * 21 20 3 35 35 H 1.09002 * 110.51008 * 73.71288 * 21 20 3 36 36 H 1.08997 * 110.73857 * 279.23235 * 22 21 20 37 37 H 1.08998 * 110.89625 * 155.97204 * 22 21 20 38 38 H 1.09004 * 110.48124 * 203.59548 * 23 22 21 39 39 H 1.09002 * 110.59225 * 81.01917 * 23 22 21 40 40 H 1.09000 * 110.06366 * 263.30744 * 24 20 3 41 41 H 1.08996 * 110.07097 * 24.78663 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2586 -1.0593 -0.8510 5 8 2.7131 -1.4446 -1.8580 6 8 4.4441 -1.5754 -0.4904 7 6 5.0655 -2.5077 -1.4140 8 6 6.3376 -3.0782 -0.7839 9 6 7.4428 -2.0839 -0.5367 10 1 7.5430 -1.6176 0.4323 11 6 8.3260 -1.7694 -1.5477 12 7 8.1435 -2.2566 -2.7555 13 14 9.7819 -0.6513 -1.2017 14 1 10.5737 -0.4706 -2.4449 15 1 9.2914 0.6687 -0.7304 16 1 10.6385 -1.2638 -0.1547 17 6 6.1771 -4.2204 0.2214 18 6 6.7419 -4.5015 -1.1734 19 6 3.3156 0.3983 1.2980 20 6 3.3120 1.3499 0.1055 21 6 2.5049 2.6594 0.1452 22 6 3.5697 3.7648 -0.0705 23 6 4.5294 3.1210 -1.1023 24 6 4.5975 1.6368 -0.6824 25 1 5.3191 -1.9888 -2.3384 26 1 4.3721 -3.3200 -1.6318 27 1 8.7214 -1.9785 -3.4832 28 1 6.8709 -4.2527 1.0614 29 1 5.1653 -4.5657 0.4334 30 1 6.1014 -5.0316 -1.8782 31 1 7.8073 -4.7186 -1.2512 32 1 2.6911 0.6591 2.1524 33 1 4.2516 -0.1069 1.5361 34 1 1.7672 2.6779 -0.6570 35 1 2.0200 2.7799 1.1140 36 1 4.0934 3.9831 0.8602 37 1 3.1153 4.6682 -0.4772 38 1 5.5164 3.5797 -1.0431 39 1 4.1264 3.2139 -2.1108 40 1 5.4692 1.4664 -0.0506 41 1 4.6453 0.9994 -1.5653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849791764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:32 Heat of formation + Delta-G solvation = -16.162038 kcal Electronic energy + Delta-G solvation = -23401.230849 eV Core-core repulsion = 20054.685528 eV Total energy + Delta-G solvation = -3346.545321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74460 -38.90309 -36.90012 -36.33065 -35.36215 -34.37146 -32.02038 -28.87878 -27.39604 -26.20946 -25.32196 -24.68743 -21.90128 -21.17595 -20.45715 -19.50585 -19.34935 -17.68045 -16.95589 -16.55701 -15.66844 -15.57780 -15.39224 -14.67063 -14.29350 -14.01124 -13.65257 -13.53559 -13.31262 -13.04301 -12.85349 -12.52748 -12.46913 -12.23610 -12.10390 -11.70654 -11.26244 -11.10986 -11.06788 -10.99780 -10.95293 -10.72653 -10.62485 -10.53303 -10.33881 -10.21314 -9.98750 -9.85504 -9.59177 -8.91759 -8.53643 -8.28423 -6.11739 -4.18631 2.10452 2.34004 2.65640 3.14111 3.24806 3.31325 3.32730 3.65655 3.73475 4.21431 4.33049 4.43766 4.57362 4.64847 5.01657 5.04545 5.16481 5.30823 5.40123 5.44372 5.51865 5.58311 5.65573 5.73399 5.84032 5.88858 5.92200 6.04513 6.10152 6.16989 6.24246 6.28582 6.37660 6.44613 6.56274 6.67472 6.97925 7.05832 7.28301 7.39721 7.40960 7.80484 8.18444 8.32866 8.82827 9.47443 10.96839 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.006027 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.032848 B = 4645.007296 C = 5953.237481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.262 3.738 3 C -0.060 4.060 4 C 0.501 3.499 5 O -0.508 6.508 6 O -0.324 6.324 7 C 0.116 3.884 8 C 0.038 3.962 9 C -0.489 4.489 10 H 0.064 0.936 11 C 0.071 3.929 12 N -0.882 5.882 13 Si 0.891 3.109 14 H -0.288 1.288 15 H -0.275 1.275 16 H -0.276 1.276 17 C -0.205 4.205 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.064 4.064 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.095 4.095 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.263 0.737 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 9.041 6.497 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.056 4.056 3 C -0.065 4.065 4 C 0.342 3.658 5 O -0.397 6.397 6 O -0.238 6.238 7 C 0.043 3.957 8 C 0.037 3.963 9 C -0.526 4.526 10 H 0.082 0.918 11 C -0.132 4.132 12 N -0.519 5.519 13 Si 0.718 3.282 14 H -0.213 1.213 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.242 4.242 18 C -0.182 4.182 19 C -0.147 4.147 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.132 4.132 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.312 8.811 5.993 12.923 hybrid contribution 1.032 0.226 -0.311 1.101 sum -6.280 9.037 5.683 12.385 Atomic orbital electron populations 1.81202 1.11417 1.07842 1.08490 1.26746 0.92230 0.93471 0.93138 1.17780 0.83133 0.99398 1.06149 1.21442 0.80934 0.80136 0.83314 1.90666 1.64459 1.58777 1.25843 1.86477 1.31196 1.56508 1.49657 1.23029 0.92283 0.88954 0.91401 1.18771 0.92161 0.88052 0.97282 1.20320 1.09903 1.24176 0.98247 0.91794 1.25002 0.97368 0.95694 0.95173 1.69950 1.39169 1.42651 1.00094 0.86682 0.82753 0.81120 0.77639 1.21349 1.20013 1.20149 1.23017 0.99666 1.07799 0.93762 1.22559 1.00305 0.99893 0.95429 1.23504 1.02492 0.99360 0.89337 1.22146 0.97193 0.87343 0.99890 1.22023 0.97356 0.91457 1.02338 1.22459 0.96360 0.97084 0.99718 1.22370 0.99918 0.94839 0.98945 1.21796 0.94642 0.96702 1.00062 0.90353 0.94001 0.92749 0.89986 0.91537 0.91647 0.89345 0.86847 0.84379 0.90781 0.90821 0.90861 0.91290 0.90936 0.91481 0.89022 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.94 18.54 42.15 0.78 -6.15 16 2 C 0.26 4.05 14.02 -20.76 -0.29 3.76 16 3 C -0.06 -0.86 2.51 -158.63 -0.40 -1.26 16 4 C 0.50 9.24 6.25 36.01 0.23 9.47 16 5 O -0.51 -10.89 16.34 -18.75 -0.31 -11.20 16 6 O -0.32 -6.37 9.31 -39.25 -0.37 -6.74 16 7 C 0.12 2.57 5.38 37.16 0.20 2.77 16 8 C 0.04 0.88 1.61 -155.66 -0.25 0.63 16 9 C -0.49 -12.23 8.77 -34.44 -0.30 -12.53 16 10 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 11 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 12 N -0.88 -23.53 12.90 55.43 0.72 -22.81 16 13 Si 0.89 19.69 29.54 -169.99 -5.02 14.66 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.21 -4.21 9.96 -26.69 -0.27 -4.48 16 18 C -0.14 -3.19 9.42 -26.69 -0.25 -3.44 16 19 C -0.11 -1.20 9.45 -26.91 -0.25 -1.46 16 20 C -0.06 -0.76 2.43 -154.25 -0.37 -1.14 16 21 C -0.09 -0.93 5.80 -25.22 -0.15 -1.08 16 22 C -0.12 -1.04 6.91 -24.66 -0.17 -1.21 16 23 C -0.12 -1.30 6.84 -24.99 -0.17 -1.47 16 24 C -0.09 -1.23 6.19 -25.75 -0.16 -1.39 16 25 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 26 H 0.04 0.90 7.92 -51.93 -0.41 0.49 16 27 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 2.07 8.14 -51.92 -0.42 1.64 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.14 1.58 7.62 -51.93 -0.40 1.18 16 34 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.18 7.25 -51.93 -0.38 0.81 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -28.53 353.57 -7.80 -36.33 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.22 Total: 1.71 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.71 Total: -11.13 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 1.50 Total: -28.97 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.67 Total: -17.93 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.53 -7.80 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849791764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.163 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds