Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.50703 * 115.55794 * 38.75285 * 3 2 1 5 5 O 1.20832 * 119.99844 * 31.33839 * 4 3 2 6 6 O 1.34227 * 120.00005 * 211.34016 * 4 3 2 7 7 C 1.45202 * 116.99574 * 185.10273 * 6 4 3 8 8 C 1.53004 * 109.46672 * 184.87156 * 7 6 4 9 9 C 1.50697 * 115.55197 * 294.87666 * 8 7 6 10 10 H 1.08001 * 120.00130 * 95.13805 * 9 8 7 11 11 C 1.37882 * 119.99983 * 275.14713 * 9 8 7 12 12 N 1.31511 * 120.00015 * 5.25937 * 11 9 8 13 13 Si 1.86800 * 119.99858 * 185.25904 * 11 9 8 14 14 H 1.48497 * 109.47070 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47194 * 299.99812 * 13 11 9 16 16 H 1.48496 * 109.46921 * 60.00225 * 13 11 9 17 17 C 1.53005 * 117.49790 * 80.54749 * 8 7 6 18 18 C 1.53000 * 117.49616 * 149.20765 * 8 7 6 19 19 C 1.53088 * 117.54107 * 252.98112 * 3 2 1 20 20 C 1.52550 * 117.50976 * 184.47018 * 3 2 1 21 21 C 1.53879 * 120.82336 * 357.29182 * 20 3 2 22 22 C 1.54992 * 104.06265 * 192.35863 * 21 20 3 23 23 C 1.54924 * 102.81987 * 37.56876 * 22 21 20 24 24 C 1.53485 * 121.09188 * 217.92382 * 20 3 2 25 25 H 1.09000 * 109.47271 * 64.87180 * 7 6 4 26 26 H 1.09003 * 109.47440 * 304.86908 * 7 6 4 27 27 H 0.96997 * 120.00335 * 174.99637 * 12 11 9 28 28 H 1.08994 * 117.49438 * 214.99924 * 17 8 7 29 29 H 1.08990 * 117.49850 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.50266 * 359.97438 * 18 8 7 31 31 H 1.09008 * 117.49757 * 144.97542 * 18 8 7 32 32 H 1.09001 * 117.50788 * 0.02562 * 19 3 2 33 33 H 1.08996 * 117.50885 * 145.09828 * 19 3 2 34 34 H 1.08998 * 110.50960 * 311.00523 * 21 20 3 35 35 H 1.09002 * 110.51008 * 73.71288 * 21 20 3 36 36 H 1.08997 * 110.73857 * 279.23235 * 22 21 20 37 37 H 1.08998 * 110.89625 * 155.97204 * 22 21 20 38 38 H 1.09004 * 110.48124 * 203.59548 * 23 22 21 39 39 H 1.09002 * 110.59225 * 81.01917 * 23 22 21 40 40 H 1.09000 * 110.06366 * 263.30744 * 24 20 3 41 41 H 1.08996 * 110.07097 * 24.78663 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2586 -1.0593 -0.8510 5 8 2.7131 -1.4446 -1.8580 6 8 4.4441 -1.5754 -0.4904 7 6 5.0655 -2.5077 -1.4140 8 6 6.3376 -3.0782 -0.7839 9 6 7.4428 -2.0839 -0.5367 10 1 7.5430 -1.6176 0.4323 11 6 8.3260 -1.7694 -1.5477 12 7 8.1435 -2.2566 -2.7555 13 14 9.7819 -0.6513 -1.2017 14 1 10.5737 -0.4706 -2.4449 15 1 9.2914 0.6687 -0.7304 16 1 10.6385 -1.2638 -0.1547 17 6 6.1771 -4.2204 0.2214 18 6 6.7419 -4.5015 -1.1734 19 6 3.3156 0.3983 1.2980 20 6 3.3120 1.3499 0.1055 21 6 2.5049 2.6594 0.1452 22 6 3.5697 3.7648 -0.0705 23 6 4.5294 3.1210 -1.1023 24 6 4.5975 1.6368 -0.6824 25 1 5.3191 -1.9888 -2.3384 26 1 4.3721 -3.3200 -1.6318 27 1 8.7214 -1.9785 -3.4832 28 1 6.8709 -4.2527 1.0614 29 1 5.1653 -4.5657 0.4334 30 1 6.1014 -5.0316 -1.8782 31 1 7.8073 -4.7186 -1.2512 32 1 2.6911 0.6591 2.1524 33 1 4.2516 -0.1069 1.5361 34 1 1.7672 2.6779 -0.6570 35 1 2.0200 2.7799 1.1140 36 1 4.0934 3.9831 0.8602 37 1 3.1153 4.6682 -0.4772 38 1 5.5164 3.5797 -1.0431 39 1 4.1264 3.2139 -2.1108 40 1 5.4692 1.4664 -0.0506 41 1 4.6453 0.9994 -1.5653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849791764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = -28.569439 kcal Electronic energy + Delta-G solvation = -23401.768874 eV Core-core repulsion = 20054.685528 eV Total energy + Delta-G solvation = -3347.083346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07380 -40.17337 -38.57395 -37.58587 -36.99354 -35.36834 -33.96147 -29.78193 -28.98979 -27.57680 -27.02518 -25.73575 -23.29862 -22.83968 -21.40229 -21.17351 -20.48912 -19.08377 -18.57107 -18.02090 -17.33666 -16.86479 -16.51275 -16.34854 -15.77570 -15.27849 -14.99540 -14.83451 -14.51647 -14.29248 -14.16657 -13.92851 -13.64519 -13.52486 -13.48486 -13.35184 -12.86536 -12.75233 -12.39222 -12.13959 -12.08691 -12.00478 -11.91991 -11.83771 -11.72250 -11.45557 -11.43316 -11.36085 -10.91276 -10.77185 -10.43499 -10.06945 -8.06547 -6.18504 0.80325 1.00104 1.34290 1.48870 1.50945 1.57178 1.85098 2.47320 2.49241 2.63469 3.06502 3.21984 3.40435 3.49713 3.63557 3.76337 3.84626 4.13518 4.26079 4.39307 4.45246 4.49540 4.52232 4.65425 4.67831 4.75113 4.79881 4.85036 4.96543 4.99650 5.01245 5.10624 5.19749 5.20948 5.28144 5.33130 5.39429 5.51039 5.57050 5.62956 5.81737 6.19117 6.39863 6.64117 6.87069 7.50550 9.01538 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.006027 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.032848 B = 4645.007296 C = 5953.237481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.276 3.724 3 C -0.081 4.081 4 C 0.501 3.499 5 O -0.546 6.546 6 O -0.321 6.321 7 C 0.129 3.871 8 C 0.010 3.990 9 C -0.495 4.495 10 H 0.064 0.936 11 C 0.026 3.974 12 N -0.914 5.914 13 Si 0.947 3.053 14 H -0.293 1.293 15 H -0.263 1.263 16 H -0.272 1.272 17 C -0.177 4.177 18 C -0.151 4.151 19 C -0.081 4.081 20 C -0.056 4.056 21 C -0.092 4.092 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.100 4.100 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.260 0.740 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 10.736 8.978 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.041 4.041 3 C -0.086 4.086 4 C 0.344 3.656 5 O -0.437 6.437 6 O -0.235 6.235 7 C 0.055 3.945 8 C 0.009 3.991 9 C -0.533 4.533 10 H 0.083 0.917 11 C -0.174 4.174 12 N -0.551 5.551 13 Si 0.773 3.227 14 H -0.219 1.219 15 H -0.187 1.187 16 H -0.197 1.197 17 C -0.214 4.214 18 C -0.188 4.188 19 C -0.118 4.118 20 C -0.057 4.057 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.161 4.161 24 C -0.137 4.137 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.503 10.515 8.502 15.465 hybrid contribution 1.091 -0.333 -1.115 1.595 sum -6.413 10.182 7.387 14.120 Atomic orbital electron populations 1.81214 1.12021 1.08660 1.09465 1.26796 0.92210 0.92749 0.92365 1.17772 0.82580 0.99681 1.08564 1.22174 0.80073 0.80084 0.83273 1.90643 1.65139 1.60259 1.27641 1.86469 1.31945 1.56266 1.48858 1.22626 0.92346 0.88959 0.90522 1.18868 0.92257 0.88453 0.99493 1.20584 1.10289 1.24310 0.98119 0.91746 1.25680 0.99646 0.97114 0.94948 1.70075 1.40138 1.44106 1.00830 0.85775 0.79770 0.79993 0.77187 1.21891 1.18728 1.19682 1.23025 1.00762 1.04755 0.92838 1.22494 0.99540 0.99594 0.97205 1.23759 1.02079 0.96986 0.88988 1.22352 0.96399 0.87194 0.99802 1.22098 0.97274 0.90238 1.03359 1.22455 0.95400 0.96978 0.99752 1.22388 1.01084 0.93250 0.99420 1.21810 0.95309 0.97907 0.98701 0.93619 0.93785 0.93143 0.89203 0.89416 0.90903 0.91098 0.83047 0.84547 0.91743 0.88407 0.89160 0.89649 0.90224 0.92110 0.89359 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.21 18.54 20.00 0.37 -13.83 16 2 C 0.28 8.22 14.02 89.44 1.25 9.47 16 3 C -0.08 -2.26 2.51 -54.85 -0.14 -2.39 16 4 C 0.50 18.73 6.25 71.24 0.45 19.18 16 5 O -0.55 -24.19 16.34 21.95 0.36 -23.83 16 6 O -0.32 -12.76 9.31 -51.39 -0.48 -13.24 16 7 C 0.13 5.86 5.38 71.98 0.39 6.25 16 8 C 0.01 0.45 1.61 -52.93 -0.09 0.37 16 9 C -0.50 -24.84 8.77 25.60 0.22 -24.61 16 10 H 0.06 3.15 7.82 -2.91 -0.02 3.12 16 11 C 0.03 1.35 5.40 84.66 0.46 1.80 16 12 N -0.91 -49.99 12.90 21.45 0.28 -49.71 16 13 Si 0.95 40.33 29.54 68.60 2.03 42.36 16 14 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 C -0.18 -7.00 9.96 30.62 0.30 -6.70 16 18 C -0.15 -6.69 9.42 30.62 0.29 -6.40 16 19 C -0.08 -1.54 9.45 30.48 0.29 -1.25 16 20 C -0.06 -1.23 2.43 -52.02 -0.13 -1.35 16 21 C -0.09 -1.55 5.80 31.57 0.18 -1.36 16 22 C -0.11 -1.53 6.91 31.93 0.22 -1.31 16 23 C -0.12 -2.44 6.84 31.72 0.22 -2.22 16 24 C -0.10 -2.55 6.19 31.23 0.19 -2.36 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 1.94 7.92 -2.39 -0.02 1.92 16 27 H 0.26 13.76 8.32 -92.71 -0.77 12.99 16 28 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.07 3.06 8.14 -2.39 -0.02 3.05 16 31 H 0.07 3.37 8.14 -2.38 -0.02 3.35 16 32 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.14 2.75 7.62 -2.39 -0.02 2.73 16 34 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.25 7.25 -2.39 -0.02 1.23 16 Total: -1.00 -62.97 353.57 7.69 -55.28 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.02 Total: 15.87 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.11 Total: -12.90 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.65 Total: -63.54 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.12 Total: -37.07 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -62.97 7.69 -55.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849791764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.710 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds