Wall clock time and date at job start Tue Mar 31 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50698 * 115.59118 * 179.26545 * 3 2 1 5 5 O 1.20827 * 119.99762 * 208.45605 * 4 3 2 6 6 O 1.34224 * 120.00523 * 28.45635 * 4 3 2 7 7 C 1.45200 * 117.00432 * 174.56555 * 6 4 3 8 8 C 1.53001 * 109.47377 * 182.90502 * 7 6 4 9 9 C 1.50703 * 115.54537 * 39.18560 * 8 7 6 10 10 H 1.08007 * 119.99893 * 267.54721 * 9 8 7 11 11 C 1.37868 * 120.00429 * 87.55521 * 9 8 7 12 12 N 1.31514 * 120.00141 * 178.65764 * 11 9 8 13 13 Si 1.86804 * 119.99772 * 358.65459 * 11 9 8 14 14 H 1.48497 * 109.47133 * 86.84895 * 13 11 9 15 15 H 1.48501 * 109.46904 * 206.84697 * 13 11 9 16 16 H 1.48498 * 109.47312 * 326.84390 * 13 11 9 17 17 C 1.52998 * 117.50092 * 253.47252 * 8 7 6 18 18 C 1.52995 * 60.00012 * 252.50930 * 17 8 7 19 19 C 1.53232 * 117.52984 * 325.11359 * 3 2 1 20 20 C 1.51874 * 117.53017 * 33.41586 * 3 2 1 21 21 C 1.53908 * 122.05340 * 3.97518 * 20 3 2 22 22 C 1.54468 * 104.01622 * 180.02562 * 21 20 3 23 23 C 1.53947 * 106.73901 * 337.58858 * 22 21 20 24 24 C 1.53836 * 122.05987 * 141.16194 * 20 3 2 25 25 H 1.08997 * 109.47004 * 302.91094 * 7 6 4 26 26 H 1.09006 * 109.46816 * 62.90708 * 7 6 4 27 27 H 0.97000 * 119.99900 * 179.97438 * 12 11 9 28 28 H 1.09001 * 117.49920 * 0.02562 * 17 8 7 29 29 H 1.09001 * 117.49631 * 145.02010 * 17 8 7 30 30 H 1.08997 * 117.49921 * 252.50602 * 18 17 8 31 31 H 1.09008 * 117.49762 * 107.49009 * 18 17 8 32 32 H 1.09004 * 117.52879 * 0.02562 * 19 3 2 33 33 H 1.08998 * 117.57726 * 214.79196 * 19 3 2 34 34 H 1.08997 * 110.50898 * 61.43001 * 21 20 3 35 35 H 1.09005 * 110.55826 * 298.69147 * 21 20 3 36 36 H 1.09001 * 110.01182 * 218.25956 * 22 21 20 37 37 H 1.08994 * 110.01341 * 96.92007 * 22 21 20 38 38 H 1.08997 * 110.00898 * 119.29184 * 23 22 21 39 39 H 1.08995 * 110.01169 * 240.62337 * 23 22 21 40 40 H 1.09000 * 110.51348 * 61.29564 * 24 20 3 41 41 H 1.09001 * 110.51613 * 298.57021 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2584 1.3600 -0.0174 5 8 4.3490 1.5015 -0.5179 6 8 2.6262 2.4135 0.5230 7 6 3.3604 3.6649 0.5798 8 6 2.5115 4.7227 1.2879 9 6 1.7176 4.2331 2.4716 10 1 0.7004 3.8957 2.3374 11 6 2.2896 4.2162 3.7259 12 7 1.5883 3.8139 4.7632 13 14 4.0610 4.7646 3.9521 14 1 4.1021 6.2354 4.1520 15 1 4.6410 4.0872 5.1395 16 1 4.8480 4.4068 2.7447 17 6 1.8892 5.8225 0.4254 18 6 3.0648 6.1478 1.3490 19 6 3.3168 -1.1136 0.7772 20 6 3.3106 -1.1232 -0.7417 21 6 2.5346 -2.1804 -1.5473 22 6 3.6370 -3.1016 -2.1149 23 6 4.9390 -2.2803 -2.1257 24 6 4.5884 -0.8849 -1.5644 25 1 4.2894 3.5164 1.1302 26 1 3.5874 3.9992 -0.4326 27 1 1.9909 3.8016 5.6456 28 1 2.0843 5.7924 -0.6466 29 1 0.9052 6.1922 0.7139 30 1 2.8543 6.7315 2.2451 31 1 4.0337 6.3318 0.8846 32 1 2.6929 -1.8471 1.2879 33 1 4.2535 -0.8641 1.2756 34 1 1.9764 -1.7098 -2.3566 35 1 1.8647 -2.7421 -0.8962 36 1 3.3811 -3.4084 -3.1291 37 1 3.7545 -3.9786 -1.4785 38 1 5.6872 -2.7590 -1.4940 39 1 5.3145 -2.1898 -3.1450 40 1 5.3912 -0.5174 -0.9253 41 1 4.3946 -0.1847 -2.3770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849791765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:35 Heat of formation + Delta-G solvation = -6.149905 kcal Electronic energy + Delta-G solvation = -23187.138865 eV Core-core repulsion = 19841.027703 eV Total energy + Delta-G solvation = -3346.111162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91254 -39.02489 -37.09143 -36.26321 -35.54369 -34.25966 -32.09820 -28.96220 -27.91494 -26.37923 -25.48553 -24.73911 -21.79776 -21.56415 -20.49615 -19.65665 -19.19515 -18.14690 -16.86570 -16.18310 -16.00155 -15.75357 -15.69069 -14.79472 -14.26480 -14.23962 -13.83636 -13.34739 -13.03564 -13.01404 -12.84877 -12.79238 -12.61186 -12.48499 -12.28633 -12.01031 -11.46070 -11.35474 -11.18971 -11.13964 -10.96787 -10.59051 -10.55975 -10.45528 -10.30834 -10.28618 -10.01443 -9.96723 -9.64155 -9.11563 -8.60267 -8.54818 -6.10538 -4.12865 2.11354 2.62994 2.70717 3.06861 3.25000 3.34651 3.35062 3.60728 3.70871 4.28337 4.38559 4.39739 4.51980 4.59031 4.76201 4.90698 5.05571 5.14172 5.29345 5.34817 5.38960 5.46033 5.51481 5.63074 5.66979 5.68672 5.78384 5.83812 5.87427 5.94665 6.00695 6.04755 6.18543 6.21715 6.26063 6.38245 6.60265 6.74835 7.02511 7.04647 7.62942 7.67580 8.12111 8.50592 8.94955 9.50890 11.01608 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.004685 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.352318 B = 5974.558135 C = 6107.101724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.247 3.753 3 C -0.045 4.045 4 C 0.502 3.498 5 O -0.505 6.505 6 O -0.310 6.310 7 C 0.105 3.895 8 C -0.008 4.008 9 C -0.474 4.474 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.896 5.896 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.293 1.293 16 H -0.263 1.263 17 C -0.177 4.177 18 C -0.192 4.192 19 C -0.102 4.102 20 C -0.070 4.070 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.078 4.078 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 -11.665 -12.060 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.071 4.071 3 C -0.050 4.050 4 C 0.343 3.657 5 O -0.395 6.395 6 O -0.223 6.223 7 C 0.031 3.969 8 C -0.009 4.009 9 C -0.511 4.511 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.533 5.533 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.188 1.188 17 C -0.214 4.214 18 C -0.229 4.229 19 C -0.140 4.140 20 C -0.072 4.072 21 C -0.131 4.131 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.116 4.116 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.560 -11.585 -11.997 17.921 hybrid contribution 1.339 0.649 0.383 1.537 sum 7.900 -10.936 -11.614 17.801 Atomic orbital electron populations 1.81216 1.11474 1.06785 1.08164 1.26855 0.92415 0.94138 0.93733 1.17624 0.83676 0.89894 1.13794 1.21593 0.83487 0.85345 0.75278 1.90630 1.20819 1.84935 1.43069 1.86648 1.45363 1.18944 1.71381 1.23008 0.94428 0.80585 0.98859 1.19337 0.98278 0.85247 0.98036 1.20127 1.00044 1.42628 0.88306 0.90193 1.24958 0.97343 0.94445 0.95715 1.69888 1.36788 1.47173 0.99431 0.86960 0.85864 0.79087 0.77693 1.20108 1.21925 1.18781 1.22925 0.97440 1.06007 0.94996 1.23009 0.96828 1.00851 1.02186 1.23275 1.01779 0.95091 0.93849 1.21970 0.97782 0.93172 0.94231 1.21924 0.97217 0.95046 0.98875 1.22105 0.94464 0.98056 1.01003 1.22195 0.97368 0.95460 1.01185 1.21841 0.94345 0.96516 0.98876 0.91356 0.92924 0.92553 0.90767 0.89100 0.88707 0.90682 0.86137 0.85836 0.90457 0.90933 0.91557 0.91467 0.91530 0.91587 0.89763 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.60 18.54 42.16 0.78 -6.82 16 2 C 0.25 4.18 14.13 -20.76 -0.29 3.89 16 3 C -0.04 -0.66 2.53 -158.90 -0.40 -1.07 16 4 C 0.50 9.04 7.50 36.00 0.27 9.31 16 5 O -0.50 -9.02 13.74 -18.75 -0.26 -9.28 16 6 O -0.31 -6.72 9.18 -39.24 -0.36 -7.08 16 7 C 0.10 2.24 5.37 37.16 0.20 2.43 16 8 C -0.01 -0.19 1.26 -155.66 -0.20 -0.38 16 9 C -0.47 -13.20 8.81 -34.44 -0.30 -13.50 16 10 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 13 Si 0.88 21.24 25.04 -169.99 -4.26 16.98 16 14 H -0.28 -6.48 7.06 56.52 0.40 -6.08 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.26 -6.02 5.44 56.52 0.31 -5.71 16 17 C -0.18 -3.57 9.88 -26.73 -0.26 -3.83 16 18 C -0.19 -3.96 7.64 -26.73 -0.20 -4.16 16 19 C -0.10 -1.13 9.71 -27.17 -0.26 -1.39 16 20 C -0.07 -0.77 2.17 -154.74 -0.34 -1.11 16 21 C -0.09 -0.85 5.92 -25.49 -0.15 -1.01 16 22 C -0.12 -0.87 6.81 -25.47 -0.17 -1.04 16 23 C -0.12 -0.97 6.81 -25.49 -0.17 -1.14 16 24 C -0.08 -0.82 4.80 -25.54 -0.12 -0.94 16 25 H 0.07 1.48 6.32 -51.93 -0.33 1.15 16 26 H 0.05 1.01 7.94 -51.93 -0.41 0.59 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 29 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.09 2.05 7.17 -51.93 -0.37 1.67 16 31 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.95 7.32 -51.93 -0.38 0.57 16 41 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -31.65 341.48 -6.89 -38.54 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.21 Total: 0.64 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.51 Total: -11.84 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 1.56 Total: -33.11 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.62 Total: -16.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.26 Total: 16.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.65 -6.89 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849791765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.391 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds