Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50698 * 115.59118 * 179.26545 * 3 2 1 5 5 O 1.20827 * 119.99762 * 208.45605 * 4 3 2 6 6 O 1.34224 * 120.00523 * 28.45635 * 4 3 2 7 7 C 1.45200 * 117.00432 * 174.56555 * 6 4 3 8 8 C 1.53001 * 109.47377 * 182.90502 * 7 6 4 9 9 C 1.50703 * 115.54537 * 39.18560 * 8 7 6 10 10 H 1.08007 * 119.99893 * 267.54721 * 9 8 7 11 11 C 1.37868 * 120.00429 * 87.55521 * 9 8 7 12 12 N 1.31514 * 120.00141 * 178.65764 * 11 9 8 13 13 Si 1.86804 * 119.99772 * 358.65459 * 11 9 8 14 14 H 1.48497 * 109.47133 * 86.84895 * 13 11 9 15 15 H 1.48501 * 109.46904 * 206.84697 * 13 11 9 16 16 H 1.48498 * 109.47312 * 326.84390 * 13 11 9 17 17 C 1.52998 * 117.50092 * 253.47252 * 8 7 6 18 18 C 1.52995 * 60.00012 * 252.50930 * 17 8 7 19 19 C 1.53232 * 117.52984 * 325.11359 * 3 2 1 20 20 C 1.51874 * 117.53017 * 33.41586 * 3 2 1 21 21 C 1.53908 * 122.05340 * 3.97518 * 20 3 2 22 22 C 1.54468 * 104.01622 * 180.02562 * 21 20 3 23 23 C 1.53947 * 106.73901 * 337.58858 * 22 21 20 24 24 C 1.53836 * 122.05987 * 141.16194 * 20 3 2 25 25 H 1.08997 * 109.47004 * 302.91094 * 7 6 4 26 26 H 1.09006 * 109.46816 * 62.90708 * 7 6 4 27 27 H 0.97000 * 119.99900 * 179.97438 * 12 11 9 28 28 H 1.09001 * 117.49920 * 0.02562 * 17 8 7 29 29 H 1.09001 * 117.49631 * 145.02010 * 17 8 7 30 30 H 1.08997 * 117.49921 * 252.50602 * 18 17 8 31 31 H 1.09008 * 117.49762 * 107.49009 * 18 17 8 32 32 H 1.09004 * 117.52879 * 0.02562 * 19 3 2 33 33 H 1.08998 * 117.57726 * 214.79196 * 19 3 2 34 34 H 1.08997 * 110.50898 * 61.43001 * 21 20 3 35 35 H 1.09005 * 110.55826 * 298.69147 * 21 20 3 36 36 H 1.09001 * 110.01182 * 218.25956 * 22 21 20 37 37 H 1.08994 * 110.01341 * 96.92007 * 22 21 20 38 38 H 1.08997 * 110.00898 * 119.29184 * 23 22 21 39 39 H 1.08995 * 110.01169 * 240.62337 * 23 22 21 40 40 H 1.09000 * 110.51348 * 61.29564 * 24 20 3 41 41 H 1.09001 * 110.51613 * 298.57021 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2584 1.3600 -0.0174 5 8 4.3490 1.5015 -0.5179 6 8 2.6262 2.4135 0.5230 7 6 3.3604 3.6649 0.5798 8 6 2.5115 4.7227 1.2879 9 6 1.7176 4.2331 2.4716 10 1 0.7004 3.8957 2.3374 11 6 2.2896 4.2162 3.7259 12 7 1.5883 3.8139 4.7632 13 14 4.0610 4.7646 3.9521 14 1 4.1021 6.2354 4.1520 15 1 4.6410 4.0872 5.1395 16 1 4.8480 4.4068 2.7447 17 6 1.8892 5.8225 0.4254 18 6 3.0648 6.1478 1.3490 19 6 3.3168 -1.1136 0.7772 20 6 3.3106 -1.1232 -0.7417 21 6 2.5346 -2.1804 -1.5473 22 6 3.6370 -3.1016 -2.1149 23 6 4.9390 -2.2803 -2.1257 24 6 4.5884 -0.8849 -1.5644 25 1 4.2894 3.5164 1.1302 26 1 3.5874 3.9992 -0.4326 27 1 1.9909 3.8016 5.6456 28 1 2.0843 5.7924 -0.6466 29 1 0.9052 6.1922 0.7139 30 1 2.8543 6.7315 2.2451 31 1 4.0337 6.3318 0.8846 32 1 2.6929 -1.8471 1.2879 33 1 4.2535 -0.8641 1.2756 34 1 1.9764 -1.7098 -2.3566 35 1 1.8647 -2.7421 -0.8962 36 1 3.3811 -3.4084 -3.1291 37 1 3.7545 -3.9786 -1.4785 38 1 5.6872 -2.7590 -1.4940 39 1 5.3145 -2.1898 -3.1450 40 1 5.3912 -0.5174 -0.9253 41 1 4.3946 -0.1847 -2.3770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849791765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -23.560092 kcal Electronic energy + Delta-G solvation = -23187.893827 eV Core-core repulsion = 19841.027703 eV Total energy + Delta-G solvation = -3346.866124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13570 -40.26326 -38.70280 -37.56449 -37.03529 -35.23245 -34.25040 -29.69078 -29.41148 -27.77740 -27.02752 -25.95105 -23.40372 -22.88653 -21.33830 -21.07501 -20.53603 -19.40366 -18.66105 -17.64972 -17.48610 -17.07058 -16.62187 -16.37337 -15.73223 -15.33303 -15.12993 -14.78330 -14.64091 -14.36051 -14.26417 -14.19348 -13.89393 -13.74548 -13.39910 -13.25507 -13.07193 -12.76213 -12.31844 -12.18287 -12.08133 -12.06129 -11.89970 -11.70718 -11.61468 -11.47497 -11.38933 -11.13796 -11.09755 -10.94832 -10.67048 -10.33504 -8.28386 -6.35892 0.84345 1.27215 1.34886 1.35780 1.40086 1.47005 1.74628 2.35379 2.43203 2.64179 3.04378 3.04478 3.27892 3.43906 3.53435 3.82356 3.84825 4.00337 4.17711 4.29463 4.33117 4.33770 4.52321 4.57876 4.59094 4.60633 4.68151 4.77772 4.79548 4.91719 4.94054 4.99101 5.11560 5.14506 5.23242 5.37527 5.41134 5.41535 5.52948 5.58441 5.65752 6.27607 6.30350 6.64656 6.74096 7.31872 8.88170 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.004685 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.352318 B = 5974.558135 C = 6107.101724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.264 3.736 3 C -0.078 4.078 4 C 0.499 3.501 5 O -0.504 6.504 6 O -0.344 6.344 7 C 0.109 3.891 8 C -0.043 4.043 9 C -0.473 4.473 10 H 0.021 0.979 11 C 0.020 3.980 12 N -0.950 5.950 13 Si 0.938 3.062 14 H -0.260 1.260 15 H -0.296 1.296 16 H -0.237 1.237 17 C -0.164 4.164 18 C -0.176 4.176 19 C -0.087 4.087 20 C -0.050 4.050 21 C -0.096 4.096 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.081 4.081 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.266 0.734 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.038 -12.346 -13.743 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.053 4.053 3 C -0.083 4.083 4 C 0.342 3.658 5 O -0.393 6.393 6 O -0.259 6.259 7 C 0.036 3.964 8 C -0.044 4.044 9 C -0.511 4.511 10 H 0.039 0.961 11 C -0.177 4.177 12 N -0.590 5.590 13 Si 0.762 3.238 14 H -0.184 1.184 15 H -0.223 1.223 16 H -0.160 1.160 17 C -0.201 4.201 18 C -0.213 4.213 19 C -0.124 4.124 20 C -0.052 4.052 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.611 -12.264 -13.720 20.760 hybrid contribution 0.295 0.837 0.859 1.235 sum 9.906 -11.427 -12.861 19.852 Atomic orbital electron populations 1.81213 1.12861 1.08198 1.10163 1.27299 0.92950 0.92828 0.92243 1.17899 0.82332 0.89469 1.18638 1.22038 0.83637 0.85502 0.74661 1.90613 1.20784 1.84992 1.42932 1.86651 1.46712 1.20001 1.72529 1.22885 0.93477 0.80220 0.99852 1.19297 1.00249 0.87068 0.97808 1.20170 0.98186 1.42054 0.90666 0.96064 1.25839 1.02196 0.94539 0.95088 1.70057 1.39221 1.49560 1.00126 0.85948 0.80136 0.79344 0.78377 1.18432 1.22258 1.16001 1.22979 0.97053 1.03428 0.96661 1.23065 0.98544 0.97702 1.01945 1.23577 1.01691 0.92860 0.94317 1.22217 0.97512 0.90878 0.94580 1.22016 0.97874 0.94851 0.98592 1.22104 0.93148 0.97845 1.01914 1.22175 0.97928 0.93610 1.01855 1.21869 0.93557 0.98115 0.98294 0.91717 0.90342 0.92546 0.87432 0.90369 0.89889 0.86994 0.84085 0.84735 0.91086 0.90407 0.90393 0.90004 0.90291 0.90611 0.90583 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.64 18.54 20.01 0.37 -17.27 16 2 C 0.26 9.14 14.13 89.44 1.26 10.41 16 3 C -0.08 -2.27 2.53 -55.03 -0.14 -2.41 16 4 C 0.50 17.77 7.50 71.24 0.53 18.30 16 5 O -0.50 -17.32 13.74 21.96 0.30 -17.02 16 6 O -0.34 -15.02 9.18 -51.36 -0.47 -15.50 16 7 C 0.11 4.49 5.37 71.98 0.39 4.88 16 8 C -0.04 -1.98 1.26 -52.93 -0.07 -2.05 16 9 C -0.47 -27.36 8.81 25.60 0.23 -27.13 16 10 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 11 C 0.02 1.19 5.47 84.65 0.46 1.65 16 12 N -0.95 -59.87 13.96 21.44 0.30 -59.57 16 13 Si 0.94 43.39 25.04 68.60 1.72 45.10 16 14 H -0.26 -11.29 7.06 99.48 0.70 -10.59 16 15 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.24 -9.87 5.44 99.48 0.54 -9.32 16 17 C -0.16 -6.36 9.88 30.59 0.30 -6.06 16 18 C -0.18 -6.76 7.64 30.59 0.23 -6.52 16 19 C -0.09 -1.76 9.71 30.31 0.29 -1.47 16 20 C -0.05 -1.02 2.17 -52.33 -0.11 -1.13 16 21 C -0.10 -1.56 5.92 31.40 0.19 -1.37 16 22 C -0.11 -1.27 6.81 31.41 0.21 -1.06 16 23 C -0.12 -1.46 6.81 31.40 0.21 -1.25 16 24 C -0.08 -1.51 4.80 31.36 0.15 -1.36 16 25 H 0.06 2.65 6.32 -2.39 -0.02 2.64 16 26 H 0.08 2.78 7.94 -2.38 -0.02 2.76 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.11 3.45 8.08 -2.39 -0.02 3.43 16 29 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.08 3.40 7.17 -2.39 -0.02 3.38 16 31 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 32 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.56 7.32 -2.39 -0.02 1.54 16 41 H 0.07 1.42 7.96 -2.39 -0.02 1.40 16 Total: -1.00 -72.74 341.48 7.22 -65.52 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.86 Total: 15.31 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.15 Total: -16.58 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: 0.67 Total: -76.84 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.17 Total: -32.51 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.72 Total: 45.10 kcal Total: -72.74 7.22 -65.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849791765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.958 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds