Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47075 * 179.97438 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 H 1.08995 * 109.29991 * 300.41819 * 15 13 12 17 17 C 1.52856 * 109.30085 * 181.03731 * 15 13 12 18 18 C 1.53436 * 108.84569 * 188.35185 * 17 15 13 19 19 N 1.46921 * 107.79051 * 63.19900 * 18 17 15 20 20 C 1.39916 * 118.92511 * 315.33306 * 19 18 17 21 21 C 1.39080 * 119.13509 * 193.30794 * 20 19 18 22 22 C 1.38020 * 120.03184 * 180.41911 * 21 20 19 23 23 C 1.38309 * 119.91271 * 359.94983 * 22 21 20 24 24 C 1.38133 * 120.15852 * 359.90681 * 23 22 21 25 25 C 1.38500 * 120.30625 * 0.06841 * 24 23 22 26 26 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 1.09000 * 109.57384 * 308.15804 * 17 15 13 34 34 H 1.08998 * 109.57344 * 68.54172 * 17 15 13 35 35 H 1.09006 * 109.79957 * 303.62594 * 18 17 15 36 36 H 1.08996 * 109.83650 * 182.79838 * 18 17 15 37 37 H 0.97000 * 120.53491 * 135.34388 * 19 18 17 38 38 H 1.07998 * 119.98336 * 0.36074 * 21 20 19 39 39 H 1.08003 * 120.04671 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.92203 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.84453 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 8 6.0355 -4.0055 -0.0015 13 6 7.3662 -4.1813 -0.0030 14 8 8.1022 -3.2231 -0.0043 15 6 7.9422 -5.5740 -0.0017 16 1 7.5997 -6.1047 0.8865 17 6 9.4682 -5.4895 0.0223 18 6 10.0458 -6.8954 -0.1875 19 7 9.6395 -7.3530 -1.5232 20 6 8.3160 -7.1562 -1.9323 21 6 7.8499 -7.8224 -3.0607 22 6 6.5502 -7.6352 -3.4858 23 6 5.7119 -6.7851 -2.7876 24 6 6.1717 -6.1247 -1.6649 25 6 7.4743 -6.3072 -1.2311 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8912 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9141 -2.1230 -0.8927 33 1 9.8102 -4.8313 -0.7765 34 1 9.7972 -5.0995 0.9855 35 1 9.6524 -7.5731 0.5704 36 1 11.1334 -6.8618 -0.1238 37 1 10.2783 -7.7846 -2.1118 38 1 8.5056 -8.4858 -3.6051 39 1 6.1882 -8.1521 -4.3623 40 1 4.6950 -6.6382 -3.1204 41 1 5.5125 -5.4624 -1.1233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850029909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -71.390804 kcal Electronic energy + Delta-G solvation = -22492.828562 eV Core-core repulsion = 19143.888343 eV Total energy + Delta-G solvation = -3348.940220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01365 -39.53281 -36.97387 -36.14677 -34.16625 -33.67845 -31.82040 -30.60863 -29.64442 -27.76822 -25.94531 -23.65848 -23.08976 -22.51246 -21.13396 -20.26216 -19.61480 -17.89008 -17.37515 -16.92681 -16.71612 -16.29053 -16.06802 -15.74731 -14.51774 -14.26960 -14.14491 -14.06960 -13.76326 -13.41309 -13.25781 -13.07250 -12.74618 -12.53357 -12.26806 -12.11062 -11.95060 -11.47876 -11.19063 -11.05122 -11.01091 -10.81022 -10.57607 -10.38734 -10.19697 -9.99533 -9.78335 -9.72078 -9.24549 -8.82383 -8.56512 -7.58819 -6.06768 -4.05726 1.26960 1.52768 2.27992 2.77591 3.18469 3.30177 3.37739 3.41189 3.79341 4.27079 4.43262 4.44589 4.64370 4.81217 4.93289 4.98634 5.10013 5.20293 5.26624 5.28575 5.39338 5.43423 5.47395 5.48669 5.56118 5.72481 5.86649 5.89529 6.03335 6.17927 6.35370 6.39211 6.45204 6.63255 6.66889 6.73883 6.80749 7.14208 7.21403 7.32752 7.48255 7.72600 7.86388 8.49990 8.97620 9.54864 11.06402 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.003346 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.791578 B = 8365.339536 C = 9221.122259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.062 3.938 12 O -0.351 6.351 13 C 0.469 3.531 14 O -0.509 6.509 15 C -0.028 4.028 16 H 0.113 0.887 17 C -0.124 4.124 18 C 0.126 3.874 19 N -0.755 5.755 20 C 0.223 3.777 21 C -0.197 4.197 22 C -0.073 4.073 23 C -0.170 4.170 24 C -0.071 4.071 25 C -0.160 4.160 26 H 0.264 0.736 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.401 0.599 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.877 -17.498 -2.772 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.010 4.010 12 O -0.268 6.268 13 C 0.312 3.688 14 O -0.397 6.397 15 C -0.047 4.047 16 H 0.131 0.869 17 C -0.163 4.163 18 C 0.001 3.999 19 N -0.387 5.387 20 C 0.122 3.878 21 C -0.219 4.219 22 C -0.092 4.092 23 C -0.190 4.190 24 C -0.089 4.089 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.236 0.764 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.944 -16.981 -2.576 27.086 hybrid contribution 0.582 0.945 -0.260 1.140 sum 21.526 -16.036 -2.836 26.992 Atomic orbital electron populations 1.69908 1.06279 1.26966 1.50880 1.25011 0.94749 0.99161 0.94474 0.86792 0.80373 0.83615 0.78604 1.20203 1.21289 1.18996 1.21055 0.89037 0.94664 1.51156 0.90770 1.19518 0.97527 0.91119 0.96648 1.21563 0.88710 1.00799 1.02827 1.23527 0.97109 0.78299 1.02114 1.86492 1.23343 1.33987 1.82967 1.23362 0.81407 0.91781 0.72254 1.90645 1.60678 1.42983 1.45424 1.19753 0.96103 0.89946 0.98927 0.86943 1.21813 0.92354 0.97730 1.04371 1.21526 0.99656 0.94140 0.84542 1.44669 1.08372 1.68055 1.17608 1.17459 0.84467 0.92797 0.93124 1.20605 0.97210 1.04735 0.99349 1.20955 0.93037 0.96666 0.98532 1.20988 1.00490 1.00240 0.97279 1.21652 0.94346 0.97303 0.95596 1.18797 0.95392 1.02645 0.99676 0.92650 0.96323 0.96735 0.91499 0.91474 0.91523 0.91531 0.89906 0.89608 0.92024 0.89700 0.76376 0.86310 0.86142 0.85906 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 10 C -0.10 -1.99 5.53 -26.74 -0.15 -2.14 16 11 C 0.06 1.08 5.47 37.16 0.20 1.29 16 12 O -0.35 -5.55 7.26 -39.26 -0.28 -5.83 16 13 C 0.47 6.99 7.01 36.01 0.25 7.24 16 14 O -0.51 -8.81 15.58 -18.75 -0.29 -9.10 16 15 C -0.03 -0.32 2.77 -93.04 -0.26 -0.58 16 16 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.12 -1.16 4.80 -26.58 -0.13 -1.29 16 18 C 0.13 0.86 7.11 -3.59 -0.03 0.83 16 19 N -0.76 -6.01 5.80 -58.09 -0.34 -6.35 16 20 C 0.22 2.39 6.47 -83.72 -0.54 1.85 16 21 C -0.20 -1.95 9.88 -39.35 -0.39 -2.34 16 22 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16 23 C -0.17 -2.02 10.04 -39.59 -0.40 -2.41 16 24 C -0.07 -0.93 9.04 -39.52 -0.36 -1.28 16 25 C -0.16 -1.95 5.47 -104.44 -0.57 -2.52 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 32 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 33 H 0.08 0.93 7.82 -51.93 -0.41 0.53 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.33 8.86 -40.82 -0.36 1.96 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.15 2.08 5.14 -52.48 -0.27 1.81 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -32.68 335.79 -9.09 -41.77 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.04 Total: 0.53 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.30 Total: -16.15 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.44 Total: -33.35 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.58 Total: -14.93 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.68 -9.09 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850029909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.624 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds